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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8992#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 671 fasta sequence
[CAGAAACTGAAACTTCTTGCTGCATTCGTCGACGGGCAAAATACTTGCTAGCTTNTGAGACAACTTTTGTAAATCCATCTCCATGTGGAGTATCCTCTTCAAAGGTGTCTTGATTTACCTCGTAGAACTCTTTACGTGATTGCGAGAACTTATCAGAATCATCCTTGGAAACTGTTTCACTTTTTCGCTCTGTGCGATTAGCCCATGTAGACAATGAATCCACAGCATAAGAATTTTCAGGAAATGAGGCATGAGGCTTAATAGACATTAAAGGCGGTATTGAGGACATATCATTTCTTTTGTGGTAAAAAGTGGTTCCACATCGAGAGGCACGCGTGTTACTACGATAGGCACTATGTTGGTTTGTGGAACTTCCACCTGACAAGTGAGACTTTTCATTTTTCTGAACAGTTCCACTAATAACGGATGGGGAAGAAGAGACTTTAGAACATTCTGTTTGTAAAGCAATCCCACCAGCAGCAGGTCTTGAACTGGTACCAACCGCTTGCCGCCGACGCGTAAGAGACCGTGAGTTCATGTTATTTTCATCAAGCGGATCGTTAGCAGTATTTGAAACAACTTCACTATTGTTGCTTTGCTTTCCTTGATCAACAAAATCAACAGCAGAATCAGTATGACCACCATTACCACTACATTGATTGCCACCACGA]
[-] EMBL CD194577 [CAGAAACTGAAACTTCTTGCTGCATTCGTCGACGGGCAAAATACTTGCTAGCTTNTGAGACAACTTTTGTAAATCCATCTCCATGTGGAGTATCCTCTTCAAAGGTGTCTTGATTTACCTCGTAGAACTCTTTACGTGATTGCGAGAACTTATCAGAATCATCCTTGGAAACTGTTTCACTTTTTCGCTCTGTGCGATTAGCCCATGTAGACAATGAATCCACAGCATAAGAATTTTCAGGAAATGAGGCATGAGGCTTAATAGACATTAAAGGCGGTATTGAGGACATATCATTTCTTTTGTGGTAAAAAGTGGTTCCACATCGAGAGGCACGCGTGTTACTACGATAGGCACTATGTTGGTTTGTGGAACTTCCACCTGACAAGTGAGACTTTTCATTTTTCTGAACAGTTCCACTAATAACGGATGGGGAAGAAGAGACTTTAGAACATTCTGTTTGTA ]
[-] EMBL CD160363 [ CGATTAGCCCATGTAGACAATGAATCCACAGCATAAGAATTTTCAGGAAATGAGGCATGAGGCTTAATAGACATTAAAGGCGGTATTGAGGACATATCATTTCTTTTGTGGTAAAAAGTGGTTCCACATCGAGAGGCACGCGTGTTACTACGATAGGCACTATGTTGGTTTGTGGAACTTCCACCTGACAAGTGAGACTTTTCATTTTTCTGAACAGTTCCACTAATAACGGATGGGGAAGAAGAGACTTTAGAACATTCTGTTTGTAAAGCAATCCCACCAGCAGCAGGTCTTGAACTGGTACCAACCGCTTGCCGCCGACGCGTAAGAGACCGTGAGTTCATGTTATTTTCATCAAGCGGATCGTTAGCAGTATTTGAAACAACTTCACTATTGTTGCTTT ]
[+] EMBL CD114520 [ TCCACATCGAGAGGCACGCGTGTTACTACGATAGGCACTATGTTGGTTTGTGGAACTTCCACCTGACAAGTGAGACTTTTCATTTTTCTGAACAGTTCCACTATTATCGGATGGGGAAGAAGAGACTTTAGAACATTCTGTTTGTAAAGCAATCCCACCAGCAGCAGGTCTTGAACTGGTACCAACCGCTTGCCGCCGACGCGTAAGAGACCGTGAGTTCATGTTATTTTCATCAAGCGGATCGTTAGCAGTATTTGAAACAACTTCACTATTGTTGCTTTGCTTTCCTTGATCAACAAAATCAACAGCAGAATCAGTATGACCACCATTACCACTACATTGATTGCCACCACGA]
[+] EMBL CD114523 [ TCCACATCGAGAGGCACGCGTGTTACTACGATAGGCACTATGTTGGTTTGTGGAACTTCCACCTGACAAGTGAGACTTTTCATTTTTCTGAACAGTTCCACTAATAACGGATGGGGAAGAAGAGACTTTAGAACATTCTGTTTGTAAAGCAATCCCACCAGCAGCAGGTCTTGAACTGGTACCAACCGCTTGCCGCCGACGCGTAAGAGACCGTGAGTTCATGTTATTTTCATCAAGCGGATCGTTAGCAGTATTTGAAACAACTTCACTATTGTTGCTTTGCTTTCCTTGATCAACAAAATCAACAGCAGAATCAGTATGACCACCATTACCACTACATTGATTGCCACCACGA]
consensusID : consensus_8992#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 546 fasta sequence
[TTGGTCTTTTAATAATGACTTTGTCCTGATCCGTGAGGTTCTGCGGATTACGACGCACTCATGCATTGAGAATGAATGATGAAAGGACAAAACTAACGAAATACATCTGAAGGAGGCGCGGAACACTTATATATCTTACCGCAAATCAAGACTAAACAGACTATGTCTGTGTCTCCAAAACAACTATTACATGTATACTATGGCAGGATCAATTAGTAAGTCACTATCTTATCATTGCCGCCCGATTTGACGTTTGACTAACTGTCCGTGCGACCTCAGTGGTTGATTCGGGTGATGCTCGCCAAAGTTTCAATTCAGTGCCATACATAATCAATGCGTATGAGGTGTATATACGTACTGAAGATAAAAAGATACTGAGTAGTTGAACTTCAGCGTAACACAAGTTATTGCTTTAATCCAAAGCTTCGTAATCTTAAGAATATTTATTTAGAAGGAAAAAAAAATTATTTGTTTAAGTGGAACATAGAAGTNTTTTGTTTCTAATTGTAGACTTTGGATAAAATATGTTTAGATGGACAAGAAGAG]
[+] EMBL CD091365 [TTGGTCTTTTAATAATGACTTTGTCCTGATCCGTGAGGTTCTGCGGATTACGACGCACTCATGCATTGAGAATGAATGATGAAAGGACAAAACTAACGAAATACATCTGAAGGAGGCGCGGAACACTTATATATCTTACCGCAAATCAAGACTAAACAGACTATGTCTGTGTCTCCAAAACAACTATTACATGTATACTATGGCAGGATCAATTAGTAAGTCACTATCTTATCATTGCCGCCCGATTTGACGTTTGACTAACTGTCCGTGCGACCTCAGTGGTTGATTCGGGTGATGCTCGCCAAAGTTTCAATTCAGTGCCATACATAATCAATGCGTATGAGGTGTATATACGTACTGAAGATAAAAAGATACTGAGTAGTTGAACTTCAGCGTAACACAAGTTATTGCTTTAATCCAAAGCTTCGTAATCTTAAGAATATTTATTTAGAAGGAAAAAAAAATTATTTGTTTAAGTGGAACATAGAAGTNTTTTGTTTCTAATTGTAGACTTTGGATAAAATATGTTTAGATGGACAAGAAGAG]
consensusID : consensus_8992#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 417 fasta sequence
[GACATCCATTTAATATATCGTACTGCTATGAAGATAACTAATGGTAAAAGTTATGAGACATGTCAGATTATATATGGTTAAGAGATGATAAGGACTAATAGCAAACCAGAGGATATGAAAGAGTAGATTGTAAAATTTTTAGGGTTAGAAAAATAAAACTTGAGCAACTCACAAGAATTTAGGACATTTGAGCTTCTTTTGATCTGCCTTAATTGATCATCATCCATAAGATTAGTGAGTTATCTGTCTATTTGGAATAAGAAAAATAAAAGGACAGAAATAATGTCGTTTTAACGATTAGAGGAATTCGAAATCTGAAAGTGATGGTAAGGAGCAGAAAGCCATGATTAATAATCGACTTCTTTTGTAGGCTGTATTATCCTTAGATTATTATCCTATCTCGTACATCGATCACAC]
[+] EMBL CD127133 [GACATCCATTTAATATATCGTACTGCTATGAAGATAACTAATGGTAAAAGTTATGAGACATGTCAGATTATATATGGTTAAGAGATGATAAGGACTAATAGCAAACCAGAGGATATGAAAGAGTAGATTGTAAAATTTTTAGGGTTAGAAAAATAAAACTTGAGCAACTCACAAGAATTTAGGACATTTGAGCTTCTTTTGATCTGCCTTAATTGATCATCATCCATAAGATTAGTGAGTTATCTGTCTATTTGGAATAAGAAAAATAAAAGGACAGAAATAATGTCGTTTTAACGATTAGAGGAATTCGAAATCTGAAAGTGATGGTAAGGAGCAGAAAGCCATGATTAATAATCGACTTCTTTTGTAGGCTGTATTATCCTTAGATTATTATCCTATCTCGTACATCGATCACAC]
consensusID : consensus_8992#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 326 fasta sequence
[AGTTTGTTTAAATAGCCGCGATTATTGATCGTGCTAAGGTAGCATAATATATAGTCTTTTAATTGTAGACTTGTGAATGGTTTAATGAGGTGTGATTAAGGTGATAGTCTATCATCTGAATTTAGTTTAGTGGTTAGGAACCCACTGTTACATTATTAGACGGAAAGACCCCAAGAGCTTTTGTTGTGTTAGATTTGNTTGGNGTAAATGTAGATTATTCATTTATTTNTAGATCCTTCATGGATAAAAGGATAAAGNNACCTTGGCGGATAACTGAGTAAAGGACAGGGAGAGNGTCCTATTGATCTGTTTATTACTACCTCGAT]
[+] EMBL SM220 [AGTTTGTTTAAATAGCCGCGATTATTGATCGTGCTAAGGTAGCATAATATATAGTCTTTTAATTGTAGACTTGTGAATGGTTTAATGAGGTGTGATTAAGGTGATAGTCTATCATCTGAATTTAGTTTAGTGGTTAGGAACCCACTGTTACATTATTAGACGGAAAGACCCCAAGAGCTTTTGTTGTGTTAGATTTGNTTGGNGTAAATGTAGATTATTCATTTATTTNTAGATCCTTCATGGATAAAAGGATAAAGNNACCTTGGCGGATAACTGAGTAAAGGACAGGGAGAGNGTCCTATTGATCTGTTTATTACTACCTCGAT]
consensusID : consensus_8992#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 257 fasta sequence
[TGTTTTGGGAGTTAAATGAACCATTATCACGCCTCAGGATGTAGGCCGAGATTCTTCGGAAGTTACGAGTGCGATGCTCCTTCTAACAACCAGAGCAACAATTTTTATAGGTACATGGAACGTCCGGACAATGTGAGAGACCGGGAAGATCAGTCAAATAGCAATGGAAATGAGGAGATACAAATCGGCGGTACTTGGGATTAGTGAAACCCATTGGACACAAGTTGGACAGCAGAAGCTAGATACGGGAGAGATGC]
[+] EMBL CD166252 [TGTTTTGGGAGTTAAATGAACCATTATCACGCCTCAGGATGTAGGCCGAGATTCTTCGGAAGTTACGAGTGCGATGCTCCTTCTAACAACCAGAGCAACAATTTTTATAGGTACATGGAACGTCCGGACAATGTGAGAGACCGGGAAGATCAGTCAAATAGCAATGGAAATGAGGAGATACAAATCGGCGGTACTTGGGATTAGTGAAACCCATTGGACACAAGTTGGACAGCAGAAGCTAGATACGGGAGAGATGC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8992#2 ------------------------------------------------------------
consensus_8992#3 ------------------------------------------------------------
consensus_8992#4 ------------------------------------------------------------
consensus_8992#0 CAGAAACTGAAACTTCTTGCTGCATTCGTCGACGGGCAAAATACTTGCTAGCTTNTGAGA 60
consensus_8992#1 ------------------------------------------------------------
consensus_8992#2 ------------------------------------------------------------
consensus_8992#3 ------------------------------------------------------------
consensus_8992#4 ------------------------------------------------------------
consensus_8992#0 CAACTTTTGTAAATCCATCTCCATGTGGAGTATCCTCTTCAAAGGTGTCTTGATTTACCT 120
consensus_8992#1 TTGGTCTTTTAATAATGACTTTGTCCTGATCCGTGAGGTTCTGCGGATTACGACGCACTC 60
consensus_8992#2 ----------------------------GACATCCATTTAATATATCGTACT-GCTATGA 31
consensus_8992#3 ---------------------------------------AGTTTGTTTAAATAGCCGCGA 21
consensus_8992#4 ------------------------------------------------------------
consensus_8992#0 CGTAGAACTCTTTACGTGATTGCGAGAACTTATCAGAATCATCCTTGGAAACTGTTTCAC 180
consensus_8992#1 ATGCATTGAGAATGAATGATGAAAGGACAAAACTAACGAAATACATCTGAAG-GAGGCGC 119
consensus_8992#2 AGATAACTAATGGTAAAAGTTATGAGACA-TGTCAGATTATATATGGTTAAGAGATGATA 90
consensus_8992#3 TTATTGATCGTGCTAAG-GTAGCATAATA-TAT-AGTCTTTTAATTGT--AGACTTGTGA 76
consensus_8992#4 -----------------------------------------------------TGTTTTG 7
consensus_8992#0 TTTTTCGCTCTGTGCGATTAGCCCATGTA-GACAATGAATCCACAGCATAAGAATTTTCA 239
consensus_8992#1 GGAACACTTATATATCTTACCGCAAATCAAGACTAAACAGACTATGTCTGTGTCTCCAAA 179
consensus_8992#2 AGGACTAA---TAGCAAACCA-GAGGATATGAAAGAGTAGATTGTAAA------ATT--T 138
consensus_8992#3 ATGGTTTA---ATGAGGTGTG-ATTAAGGTGATAGTCTATCATCTGAA------TTTAGT 126
consensus_8992#4 GGAGTTAA---ATGAACCATT-ATC-ACGCCTCAGGATGTAGGCCGAG------ATTC-T 55
consensus_8992#0 GGAAATGAGGCATGAGGCTTA-ATAGACATTAAAGGCGGTATTGAGGACATATCATTTCT 298
consensus_8992#1 ACAACTATTACATGTATACTATGGCAGGATCAATTAGTAAGTCACTATCTTATCATTGCC 239
* * **
consensus_8992#2 TTAG-GGTTAGAAAAATAAAACTTGAGCAACTCACAAGAATTTAGGACATTTGAGCTTCT 197
consensus_8992#3 TTAGTGGTTAGGAACCCACTGTTACATTATTAGACGGAAA----GACCCCAAGAGCTTTT 182
consensus_8992#4 TCGGAAGTTACGAGTGCGATGCTCCTTCTAACAACCAGAG---------CAACAATTTTT 106
consensus_8992#0 TTTGTGGTAA--AAAGTGGTTCCACATCGAGAGGCACGCGTGT-TACTACGATAGGCACT 355
consensus_8992#1 GCCCGATTTGACGTTTGACTAACTGTCCGTGCGACCTCAGTGGTTGATTCGGGTGATGCT 299
* * *
consensus_8992#2 TTTGATCTGCCTTAATTGATCATCATCCATA--AGATTAGT----GAGTTATCTGTCTAT 251
consensus_8992#3 GTTG---TGTTAGATTTGNTTGGNGTAAATGT-AGATTATT----CATTTATTTNTAGAT 234
consensus_8992#4 ATAGG--TACATGGAACGTCCGGACAATGTG--AGAGACCG----GGAAGATCAGTCAAA 158
consensus_8992#0 ATGTTGGTTTGTGGAACTTCCACCTGACAAGTGAGACTTTT----CATTTTTCTGAACAG 411
consensus_8992#1 CGCCAA-AGTTTCAATTCAGTGCCATACATAATCAATGCGTATGAGGTGTATATACGTAC 358
* * *
consensus_8992#2 TTGGAATAAGAA-AAATAAAAGGACAGAAA--TAATGTCGTTTTAACGATTAGAGGAATT 308
consensus_8992#3 CCTTCATGG------ATAAAAGG------A--TAAAGNNACCTTGGCGGATAACTGAGTA 280
consensus_8992#4 TAGCAATGG----AAATGAGGAGATACAAA--TCG-GCGGTACTTGGGATTAGTGAAACC 211
consensus_8992#0 TTCCACTAATAACGGATGGGGAAGAAGAGACTTTAGAACATTCTGTTTGTAAAGCAATCC 471
consensus_8992#1 TGAAGATAAAAAGATACTGAGTAGTTGAACTTCAGCGTAACACAAGTTATTGCTTTAATC 418
* * *
consensus_8992#2 CG--------AAATCTGAAAGTGATGGTAAGGAGCAGAAAGCCATGATTAATAATCGACT 360
consensus_8992#3 AA--------GGACAGGGAGAGNGTCCTATTGATCTGT---TTATTACTACC--TCGAT- 326
consensus_8992#4 CATT------GGACACAAGTTGGACAGCAGAAGCTAGA----TACGGGAGAGATGC---- 257
consensus_8992#0 CACCAGCAGCAGGTCTTGAACTGGTACCAACCGCTTGCCGCCGACGCGTAAGAGACCGTG 531
consensus_8992#1 CAAAGCTTCGTAATCTTAAGAATAT-TTATTTAGAAGGAAAAAAAAATTATTTGTTTAAG 477
* * *
consensus_8992#2 TCTTTTGTAGGCTGTATTATCCTTAGATTATTATCCTATCTCGTACATCGATCACAC--- 417
consensus_8992#3 ------------------------------------------------------------
consensus_8992#4 ------------------------------------------------------------
consensus_8992#0 AGTTCATGTTATTTTCATCAAGCGGATCGTTAGCAGTATTTGAAACAACTTCACTATTGT 591
consensus_8992#1 TGGAACATAGAAGTNTTTTGTTTCTAATTGTAGACTTTGGATAAAATATGTTTAGATGGA 537
consensus_8992#2 ------------------------------------------------------------
consensus_8992#3 ------------------------------------------------------------
consensus_8992#4 ------------------------------------------------------------
consensus_8992#0 TGCTTTGCTTTCCTTGATCAACAAAATCAACAGCAGAATCAGTATGACCACCATTACCAC 651
consensus_8992#1 CAAGAAGAG--------------------------------------------------- 546
consensus_8992#2 --------------------
consensus_8992#3 --------------------
consensus_8992#4 --------------------
consensus_8992#0 TACATTGATTGCCACCACGA 671
consensus_8992#1 --------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||