cluster # 8996

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Schistosoma mansoni
cluster # 8996 cluster # 8996 Sequences # 8 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8996#0 length = 408 sequences # 7

consensus_8996#1 length = 296 sequences # 1

consensusID : consensus_8996#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 7
consensus length = 408
fasta sequence

                              [CTCGGTACCCAAGGTGAATCAGGAAAATTATGATTGGATGACTGCAACAAGTATTTGACCACAGAGATGGGAAGGTAAGTTTACTAGATGAACGCTTCTGAACTAGTAGCTTGAGGCTTCTGTGATTTGTTTCACTACTAGCATCCTCTTGAAAAAGGAATAAGCTGAAGGCCCGATGTAGTAATGATTTTCCGAATAATACTTCATGACATGTCTTCTTGTTAGCAAACCCAAGAACATGATCACACTTGTCAACGAGTATGCACAACTCATTTAACATATAGTTTGACTGTGCGCTACAATACTTCCTGGCTCCTGAAAACAACGCGACGCGACCCAACATCTCAAAATATCCATTTGACCAACAGATATTTGAAATACCGCCTCGTGACGAATTCTGGCCTGCGA]

[+] EMBL CD167957             [CTCGGTACCCAAGGTGAATCAGGAAAATTATGATTGGATGACTGCAACAAGTATTTGACCACAGAGATGGGAAGGTAAGTTTACTAGATGAACGCTTCTGAACTAGTAGCTTGAGGCTTCTGTGATTTGTCTCACTACTAGCATCCTCTTGAAAAAGGAATAAGCTGAAGGCCCGATGTAGTAATGATTTTCCGAATAATACTTCATGACATGTCTTCTTGTTAGCAAACCCAAGAACATGATCACACTTGTCAACGAGTATGCACAACTCATTTAACATATAGTTTGACTGTGCGCTACAAT                                                                                                         ]
[-] EMBL CD066411             [                                 TTGGATGACTGCAACAAGTATTTGACCACAGAGATGGGAAGGTAAGTTTACTAGATGAACGCTTCTGAACTAGTAGCTTGAGGCTTCTGTGATTTGTTTCACTACTAGCATCCTCTTGAAAAAGGAATAAGCTGAAGGCCCGATGTAGTAATGATTTTCCGAATAATACTTCATGACATGTCTTCTTGTTAGCAAACCTAAGAACATGATCACACTTGTCAACGAGTATGCACAACTCATTTAACATATAGTTTGACTGCGCGCTACAATA                                                                                                        ]
[-] EMBL CD066676             [                                 TTGGATGACTGCAACAAGTATTTGACCACAGAGATGGGAAGGTAAGTTTACTAGATGAACGCTTCTGAACTAGTAGCTTGAGGCTTCTGTGATTTGTTTCACTACTAGCATCCTCTTGAAAAAGGAATAAGCTGAAGGCCCGATGTAGTAATGATTTTCCGAATAATACTTCATGACATGTCTTCTTGTTAGCAAACCCAAGAACATGATCACACTTGTCAACGAGTATGCACAACTCATTTAACATATAGTTTGACTGTGCACTACAATA                                                                                                        ]
[-] EMBL CD066717             [                                 TTGGATGACTGCAACAAGTATTTGACCACAGAGATGGGAAGGTAAGTTTACTAGATGAACGCTTCTGAACTAGTAGCTTGAGGCTTCTGTGATTTGTTTCACTACTAGCATCCTCTTGAAAAAGGAATAAGCTGAAGGCCCGATGTAGTAATGATTTTCCGAATAATACTTCATGACATGTCTTCTTGTTAGCAAACCTAAGAACATGATCACACTTGTCAACGAGTATGCACAACTCATTTAACATATAGTTTGACTGCGCGCTACAATA                                                                                                        ]
[-] EMBL CD066290             [                                                                     GGAAGGTAAGTTTACTAGATGAACGCTTCTGAACTAGTAGCTTGAGGCTTCTGTGATTTGTTTCACTACAAGCATCCTCTTGAAAAAGGAATAAGCTGAAGGCCCGATGTAGTAATGATTTTCCGAATAATACTTCATGACATGTCTTCTTGTTAGCAAACTCAAGAACATGATCACACTTGTCAACGAGTATGCAC                                                                                                                                              ]
[-] EMBL CD078204             [                                                                                                                                                                                                                  ATATCTTCTTGTTAGCAACCCCAAGAACATGATCACACTTGTCAACGAGTATGCACAACTCATTTAACATATAGTTTGACTGTGCGCTACAATACTTCCTGGCTCCTGAAAACAACGCGACGCGACCCAACATCTCAAAATATCCATTTGACCAACAGATATTTGAAATACCGCCTCGTGACGAATTCTGGCCTGCGA]
[-] EMBL CD066412             [                                                                                                                                                                                                                                      CCAAGAACATGATCACACTTGTCAACGAGTATGCACAACTCATTTAACATATAGTTTGACTGTGCGCTACAATACTTCCTGGCTCCTGAAAACAACGCGACGCGACCCAACATCTCAAAATATCCATTTGACCAACAGATATTTG                                 ]




>consensus_8996#0
CTCGGTACCCAAGGTGAATCAGGAAAATTATGATTGGATGACTGCAACAAGTATTTGACC
ACAGAGATGGGAAGGTAAGTTTACTAGATGAACGCTTCTGAACTAGTAGCTTGAGGCTTC
TGTGATTTGTTTCACTACTAGCATCCTCTTGAAAAAGGAATAAGCTGAAGGCCCGATGTA
GTAATGATTTTCCGAATAATACTTCATGACATGTCTTCTTGTTAGCAAACCCAAGAACAT
GATCACACTTGTCAACGAGTATGCACAACTCATTTAACATATAGTTTGACTGTGCGCTAC
AATACTTCCTGGCTCCTGAAAACAACGCGACGCGACCCAACATCTCAAAATATCCATTTG
ACCAACAGATATTTGAAATACCGCCTCGTGACGAATTCTGGCCTGCGA

consensusID : consensus_8996#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 296
fasta sequence

                              [TAGATGAACGCTTCTGAACTAGTAGCTTGAGGCTTCTGTGATTTGTTTCACTACTAGCATCCTCTTGAAAAAGGAATAAGCTGAAGGCCCGATGTAGTAATGATTTTCCGAATAGTACTTCTTGATAGCAAACCCAGGAACATGATCACACTTGTCAACGAGTCTGCACAACTCATTTAACATATAGATTGACTGTGCGCTACAATACTTCCTGGCTCCTGAAAACAACGCGACGCGACCCAACATCTCAAAATATCCATTTGACCAACAGATATTTGAAATACCGCTTATGTCTG]

[+] EMBL CD178529             [TAGATGAACGCTTCTGAACTAGTAGCTTGAGGCTTCTGTGATTTGTTTCACTACTAGCATCCTCTTGAAAAAGGAATAAGCTGAAGGCCCGATGTAGTAATGATTTTCCGAATAGTACTTCTTGATAGCAAACCCAGGAACATGATCACACTTGTCAACGAGTCTGCACAACTCATTTAACATATAGATTGACTGTGCGCTACAATACTTCCTGGCTCCTGAAAACAACGCGACGCGACCCAACATCTCAAAATATCCATTTGACCAACAGATATTTGAAATACCGCTTATGTCTG]




>consensus_8996#1
TAGATGAACGCTTCTGAACTAGTAGCTTGAGGCTTCTGTGATTTGTTTCACTACTAGCAT
CCTCTTGAAAAAGGAATAAGCTGAAGGCCCGATGTAGTAATGATTTTCCGAATAGTACTT
CTTGATAGCAAACCCAGGAACATGATCACACTTGTCAACGAGTCTGCACAACTCATTTAA
CATATAGATTGACTGTGCGCTACAATACTTCCTGGCTCCTGAAAACAACGCGACGCGACC
CAACATCTCAAAATATCCATTTGACCAACAGATATTTGAAATACCGCTTATGTCTG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8996#0      CTCGGTACCCAAGGTGAATCAGGAAAATTATGATTGGATGACTGCAACAAGTATTTGACC 60
consensus_8996#1      ------------------------------------------------------------
                                                                                  

consensus_8996#0      ACAGAGATGGGAAGGTAAGTTTACTAGATGAACGCTTCTGAACTAGTAGCTTGAGGCTTC 120
consensus_8996#1      ------------------------TAGATGAACGCTTCTGAACTAGTAGCTTGAGGCTTC 36
                                              ************************************

consensus_8996#0      TGTGATTTGTTTCACTACTAGCATCCTCTTGAAAAAGGAATAAGCTGAAGGCCCGATGTA 180
consensus_8996#1      TGTGATTTGTTTCACTACTAGCATCCTCTTGAAAAAGGAATAAGCTGAAGGCCCGATGTA 96
                      ************************************************************

consensus_8996#0      GTAATGATTTTCCGAATAATACTTCATGACATGTCTTCTTGTTAGCAAACCCAAGAACAT 240
consensus_8996#1      GTAATGATTTTCCGAATAGTACTTCTTGA-------------TAGCAAACCCAGGAACAT 143
                      ****************** ****** ***             *********** ******

consensus_8996#0      GATCACACTTGTCAACGAGTATGCACAACTCATTTAACATATAGTTTGACTGTGCGCTAC 300
consensus_8996#1      GATCACACTTGTCAACGAGTCTGCACAACTCATTTAACATATAGATTGACTGTGCGCTAC 203
                      ******************** *********************** ***************

consensus_8996#0      AATACTTCCTGGCTCCTGAAAACAACGCGACGCGACCCAACATCTCAAAATATCCATTTG 360
consensus_8996#1      AATACTTCCTGGCTCCTGAAAACAACGCGACGCGACCCAACATCTCAAAATATCCATTTG 263
                      ************************************************************

consensus_8996#0      ACCAACAGATATTTGAAATACCGCCTCGTGACGAATTCTGGCCTGCGA 408
consensus_8996#1      ACCAACAGATATTTGAAATACCGC-TTATGTCTG-------------- 296
                      ************************ *  ** *