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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9024#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1193 fasta sequence
[GAGGGGGCTTTAGCCTCTGCGCCGNTGATATTCCCGATCTCGTTTACTTCGTAAACGTTCAATTTCGGCTTCTAATTCAATAGGACCTACTCCTCGACGAGCTAAGTCTTCACGAGCAGTTGCCAACTCACGTTTCAGTATACTGATTTGAGCTGTAAGACTTGATTGGTAACATCGGCGGCTTCGAGTTTTGAAGCCTTTTTCGATATTTCCTCATGAATACGGAGGATTACGTTTTCCCGATAAGTCAGAAGTTGATTAAGCTCGTTGACTTGGCTCTCTAGTTCCATCACCTTAGCACGCAGAGTGGCAGGATCAGTCTTCGAAAGTCGTTCTAAATCGTTTTCCAGCTTTTTGTCATCAGCGATCCATGGAGGCAAAGTGGGTCCAATCAGACGACCACCAAGCATACCACCACCATATCTTCTTTCAGAATGTGCCATTTCCTTGATACGTGCTTCCAGAGTTGCGCATTTCTCACCCAGCATCTCATATTCATCTAGTTGGTGTTCCAACTGCATTTGCAGCTGCTTTTTATCACAGCATAATTCTTCAATCTTGTGCTCCAATCCGCTTTTAACTTCTTTAAGTTCCGCAATACGATTTTCGGATTTAGCCTGTTCGGATTTGAAATACTCGTTAGCAGCAGCTAATCCACTCTCACTAGTTGTTTCAGAACGATCATTGACCAAATTATCAAAAAGTTCCTGTAGCGCCTTCAATCGTTCTTTTAAGTCATCAGCATCTTCACCTCTAACAATAGCTATATTTAATTCCGTCTCTAGATTAGAGGTTTTATGTAACAAATTATCTCGTTCCTCCGTGATATTTCTCAAGCGTTCTTCAATTTCCTTCGTGAAATTACTTTGTTTTACAATAATGCTATCCTTGATCTTTATTAAACCGGATGCTTCATCTGCACGCCTTTCAGCATCAGGCGTTCACATTGTCCTTGTGAATCGGCTAATTCCTGCTTTGTGGCATCGAACGCCTTAAGACGCCCTTCTAAGTCAGCAATCTGCAAACGGCAATCCATAACCTTTTTTTTCTCATCCCTATTCTGATTCCAGCTCTTTTATAGTATTTTCCAGCTGACCACGTGTATTTGAAAGTTGAGTTGTGAGCTCGGAACAAAGGCGTTCTTTTGTTTTGAACTCGGCAGACATTTTATCAACCTGTGCAGATTTAGCATC]
[+] EMBL CD094686 [GAGGGGGCTTTAGCCTCTGCGCCGNTGATATTCCCGATCTCGTTTACTTCGTAAACGTTCAATTTCGGCTTCTAATTCAATAGGACCTACTCCTCGACGAGCTAAGTCTTCACGAGCAGTTGCCAACTCACGTTTCAGTATACTGATTTGAGCTGTAAGACTTGATTGGTAACATCGGCGGCTTCGAGTTTTGAAGCCTTTTTCGATATTTCCTCATGAATACGGAGGATTACGTTTTCCCGATAAGTCAGAAGTTGATTAAGCTCGTTGACTTGGCTCTCTAGTTCCATCACCTTAGCACGCAGAGTGGCAGGATCAGTCTTCGAAAGTCGTTCTAAATCGTTTTCCAGCTTTTTGTCATCAGCGATCCATGGAGGCAAAGTGGGTCCAATCAGACGACCACCAAGCATACCACCACCATATCTTCTTTCAGAATGTGCCATTTCCTTGATACGTGCTTCCAGAGTTGCGCATTTCTCACCCAGCTTCTCATATTCATCTAGTTGGTGTTCCAACTGCATTTGC ]
[-] EMBL CD118590 [ GTTGCGCATTTCTCACGCAGTATGTCATATTCATATAGTTGATGTTCCAACTGCATTTGCAGCTGCTTTTTATCACAGCATAATTCTTCAATCTTGTGCTCCAATCCGCTTATAGCTTCTTTAAGTTCCGCAATACGGTTTTCGGATTTAGCCTGTTCGGATTTGAAATACTCGTTAGCAGCAGATAATCCACTCTCACTAGTTGTTTCAGATCGATCATTGTCCAAATTATCAAAAAGTTCCTGTAGCGCCTTCAATCGTTCTTTTAAGTCATCAGCATCTTCACCTATAACAATAGCTATATTTAATTCCGTCTCTAGATTAGAGGTTTTATGTAACAAATTATCTCGTTCCTCCGTGATATTTGTCAAGCGTTCTTCAATTTCCTTCGTGAAATTACTTTGTTATACAATAATGCTATCCTTGATGTTCATTAAACCGGA ]
[-] EMBL CD118550 [ GTTGCGCATTTCTCACCCAGCCTCTCATATTCATCTAGTTGTTGTTCCAACTGCATTTGCAGTTGCTTTTTATCACAACATAATTCTTCAATCTTCTGCTCCAATCCGCTTTTAACTTCTTTAAGTTCCGCAATACGATTTTCGGATTTAGCCTGTTCGGATTTGAAATACTCGTTAGCAGCAGCTAATCCACTCTCACTAGTTGTTACAGAACGATCATTGACCAAATTATCAAAAAGTTCCTGTAGCGCCTTCAATCGTTCTTTTAAGTCATCAGCATCTTCACCTCTAACAATAGCTATATTTAATTCCGTCTCTAGATTAGAGGTTTTATGTAACAAATTATCTCGTTCCTCCGTGATATTTCTCAAGCGTTCTTCAATTTCCTTCGTGAAATTACTTTGTTTTACAATAATGCTATCCTTGATCTTTATTAAACCGGA ]
[+] EMBL CD146523 [ TCCAATCCGCTTTTAACTTCTTTAAGTTCCGCAATACGATTTTCGGATTTAGCCTGTTCGGATTTGAAATACTCGTTAGCAGCAGCTAATCCACTCTCACTAGTTGTTTCAGAACGATCATTGACCAAATTATCAAAAAGTTCCTGTAGCGCCTTCAATCGTTCTTTTAAGTCATCAGCATCTTCACCTCTAACAATAGCTATATTTAATTCCGTCTCTAGATTAGAGGTTTTATGTAACAAATTATCTCGTTCCTCCGTGATATTTCTCAAGCGTTCTTCAATTTCCTTCGTGAAATTACTTTGTTTTACAATAATGCTATCCTTGATCTTTATTAAACCGGATGCTTCATCTGCACGCCTTTCAGCATCAG ]
[+] EMBL CD146530 [ TCCAATCCGCTTTTAACTTCTTTAAGTTCCGCAATACGATTTTCGGATTTAGCCTGTTCGGATTTGAAATACTCGTTAGCAGCAGCTAATCCACTCTCACTAGTTGTTTCAGAACGATCATTGACCAAATTATCAAAAAGTTCCTGTAGCGCCTTCAATCGTTCTTTTAAGTCATCAGCATCTTCACCTCTAACAATAGCTATATTTAATTCCGTCTCTAGATTAGAGGTTTTATGTAACAAATTATCTCGTTCCTCCGTGATATTTCTCAAGCGTTCTTCAATTTCCTTCGTGAAATTACTTTGTTTTACAATAATGCTATCCTTGATCTTTATTAAACCGGATGCTTCATCTGCACGCCTTTCAGCATCAG ]
[+] EMBL CD094838 [ TCAAGCGTTCTTCAATTTCCTTCGTGAAATTACTTTGTTTTACAATAATGCTATCCTTGATCTTTATTAAACCGGATGCTTCATCTGCACGCCTTTCAGCATCAGGCGTTCACATTGTCCTTGTGAATCGGCTAATTCCTGCTTTGTGGCATCGAACGCCTTAAGACGCCCTTCTAAGTCAGCAATCTGCAAACGGCAATCCATAACCTTTTTTTTCTCATCCCTATTCTGATTCCAGCTCTTTTATAGTATTTTCCAGCTGACCACGTGTATTTGAAAGTTGAGTTGTGAGCTCGGAACAAAGGCGTTCTTTTGTTTTGAACTCGGCAGACATTTTATCAACCTGTGCAGATTTAGCATC]
consensusID : consensus_9024#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 140 fasta sequence
[ACTCATCTCATCAATGTGGCATTCCGATTCCTCTTGAAAGCGAATTTCATAGATTTAAAGAACAATTTTAGCTGATGTTAGAAACAATAAGGCGAACGACTGCCAAAATCAACTGTATAACCATATACCTGTCAAATTCA]
[+] EMBL CD059474 [ACTCATCTCATCAATGTGGCATTCCGATTCCTCTTGAAAGCGAATTTCATAGATTTAAAGAACAATTTTAGCTGATGTTAGAAACAATAAGGCGAACGACTGCCAAAATCAACTGTATAACCATATACCTGTCAAATTCA]
consensusID : consensus_9024#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 115 fasta sequence
[GCTCCAGTCGAATTGGACTCTGAGGCGCTTGCAGAGACTGCAGCACAACCGGAACGGGAACGATTGGTTGAGCGTGTCGGTGAGATGGAGGCAAGTTGAAGCGGACGCAGAAAGT]
[+] EMBL CD059472 [GCTCCAGTCGAATTGGACTCTGAGGCGCTTGCAGAGACTGCAGCACAACCGGAACGGGAACGATTGGTTGAGCGTGTCGGTGAGATGGAGGCAAGTTGAAGCGGACGCAGAAAGT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9024#0 GAGGGGGCTTTAGCCTCTGCGCCGNTGATATTCCCGATCTCGTTTACTTCGTAAACGTTC 60
consensus_9024#1 ------------------------------------------------------------
consensus_9024#2 ------------------------------------------------------------
consensus_9024#0 AATTTCGGCTTCTAATTCAATAGGACCTACTCCTCGACGAGCTAAGTCTTCACGAGCAGT 120
consensus_9024#1 ------------------------------------------------------------
consensus_9024#2 ------------------------------------------------------------
consensus_9024#0 TGCCAACTCACGTTTCAGTATACTGATTTGAGCTGTAAGACTTGATTGGTAACATCGGCG 180
consensus_9024#1 ------------------------------------------------------------
consensus_9024#2 ------------------------------------------------------------
consensus_9024#0 GCTTCGAGTTTTGAAGCCTTTTTCGATATTTCCTCATGAATACGGAGGATTACGTTTTCC 240
consensus_9024#1 ------------------------------------------------------------
consensus_9024#2 ------------------------------------------------------------
consensus_9024#0 CGATAAGTCAGAAGTTGATTAAGCTCGTTGACTTGGCTCTCTAGTTCCATCACCTTAGCA 300
consensus_9024#1 ------------------------------------------------------------
consensus_9024#2 ------------------------------------------------------------
consensus_9024#0 CGCAGAGTGGCAGGATCAGTCTTCGAAAGTCGTTCTAAATCGTTTTCCAGCTTTTTGTCA 360
consensus_9024#1 ------------------------------------------------------------
consensus_9024#2 ------------------------------------------------------------
consensus_9024#0 TCAGCGATCCATGGAGGCAAAGTGGGTCCAATCAGACGACCACCAAGCATACCACCACCA 420
consensus_9024#1 ------------------------------------------------------------
consensus_9024#2 ------------------------------------------------------------
consensus_9024#0 TATCTTCTTTCAGAATGTGCCATTTCCTTGATACGTGCTTCCAGAGTTGCGCATTTCTCA 480
consensus_9024#1 ------------------------------------------------------------
consensus_9024#2 ------------------------------------------------------------
consensus_9024#0 CCCAGCATCTCATATTCATCTAGTTGGTGTTCCAACTGCATTTGCAGCTGCTTTTTATCA 540
consensus_9024#1 ------------------------------------------------------------
consensus_9024#2 ------------------------------------------------------------
consensus_9024#0 CAGCATAATTCTTCAATCTTGTGCTCCAATCCGCTTTTAACTTCTTTAAGTTCCGCAATA 600
consensus_9024#1 ------------------------------------------------------------
consensus_9024#2 ------------------------------------------------------------
consensus_9024#0 CGATTTTCGGATTTAGCCTGTTCGGATTTGAAATACTCGTTAGCAGCAGCTAATCCACTC 660
consensus_9024#1 ------------------------------------------------------------
consensus_9024#2 ------------------------------------------------------------
consensus_9024#0 TCACTAGTTGTTTCAGAACGATCATTGACCAAATTATCAAAAAGTTCCTGTAGCGCCTTC 720
consensus_9024#1 ------------------------------------------------------------
consensus_9024#2 ------------------------------------------------------------
consensus_9024#0 AATCGTTCTTTTAAGTCATCAGCATCTTCACCTCTAACAATAGCTATATTTAATTCCGTC 780
consensus_9024#1 ------------------------------------------------------------
consensus_9024#2 ------------------------------------------------------------
consensus_9024#0 TCTAGATTAGAGGTTTTATGTAACAAATTATCTCGTTCCTCCGTGATATTTCTCAAGCGT 840
consensus_9024#1 ------------------------------------------------------------
consensus_9024#2 ------------------------------------------------------------
consensus_9024#0 TCTTCAATTTCCTTCGTGAAATTACTTTGTTTTACAATAATGCTATCCTTGATCTTTATT 900
consensus_9024#1 ------------------------------------------------------------
consensus_9024#2 ------------------------------------------------------------
consensus_9024#0 AAACCGGATGCTTCATCTGCACGCCTTTCAGCATCA-GGCGTTCACATTGTCCTTGTGAA 959
consensus_9024#1 --------------------ACTCATCTCATCAATGTGGCATTCCGATTCCTCTTGAAA- 39
consensus_9024#2 ------------------------GCTCCAGTCGAATTGGACTCTGAGGCGCTTGCAGAG 36
** * ** * * *
consensus_9024#0 TCGGCTAATTCCTGCTTTGTGGCATCGAACGCCTTAAGACGCCCTTCTAAGTCAGCAATC 1019
consensus_9024#1 ---GCGAATTTCA---TAGATTTAAAGAACAATTTTAGCTGATGTTAGAAA-CAATAA-- 90
consensus_9024#2 ACTGC-AGCACAACCGGAACGGGAACGATTGGTTGAGCGTGTCGGTGAGATGGAGGCAAG 95
** * * ** * * * * * *
consensus_9024#0 TGCAAACGGCAATCCATAACCTTTTTTTTCTCATCCCTATTCTGATTCCAGCTCTTTTAT 1079
consensus_9024#1 GGCGAACGACTGCCAAAATCAACTGTATAACCATATACCTGTCAAATTCA---------- 140
consensus_9024#2 TTGAAGCGGACGCAGAAAGT---------------------------------------- 115
* ** * *
consensus_9024#0 AGTATTTTCCAGCTGACCACGTGTATTTGAAAGTTGAGTTGTGAGCTCGGAACAAAGGCG 1139
consensus_9024#1 ------------------------------------------------------------
consensus_9024#2 ------------------------------------------------------------
consensus_9024#0 TTCTTTTGTTTTGAACTCGGCAGACATTTTATCAACCTGTGCAGATTTAGCATC 1193
consensus_9024#1 ------------------------------------------------------
consensus_9024#2 ------------------------------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||