cluster # 9029

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Schistosoma mansoni
cluster # 9029 cluster # 9029 Sequences # 8 consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9029#0 length = 286 sequences # 1
consensus_9029#1 length = 247 sequences # 3

consensus_9029#2 length = 205 sequences # 3
consensus_9029#3 length = 138 sequences # 1

consensusID : consensus_9029#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 286
fasta sequence

                              [ACGCAAGCGATTATGTTGAGATCTGGAGAACATCTAACAAAAGATGACTGAGCGTTGTTATCTGCTAGCAGATTGGCACGAATTAATTAGGTGGGGCTCTGGATTGGGGCCGTGGGAGTTAATTCCAGGAAGAGCGTGTTCATGCACATCGGGCACGATATTAGTTACCATTATACTATTAATGGTACATCTCTGCCACGCGTTCAAGAGCACAAAGACTTAGGAGTAATTATAAGTCACGACTTAAAAACTACTACGCACTGCAATGCGGTTGCTTCCAAAGGCT]

[+] EMBL CD126093             [ACGCAAGCGATTATGTTGAGATCTGGAGAACATCTAACAAAAGATGACTGAGCGTTGTTATCTGCTAGCAGATTGGCACGAATTAATTAGGTGGGGCTCTGGATTGGGGCCGTGGGAGTTAATTCCAGGAAGAGCGTGTTCATGCACATCGGGCACGATATTAGTTACCATTATACTATTAATGGTACATCTCTGCCACGCGTTCAAGAGCACAAAGACTTAGGAGTAATTATAAGTCACGACTTAAAAACTACTACGCACTGCAATGCGGTTGCTTCCAAAGGCT]




>consensus_9029#0
ACGCAAGCGATTATGTTGAGATCTGGAGAACATCTAACAAAAGATGACTGAGCGTTGTTA
TCTGCTAGCAGATTGGCACGAATTAATTAGGTGGGGCTCTGGATTGGGGCCGTGGGAGTT
AATTCCAGGAAGAGCGTGTTCATGCACATCGGGCACGATATTAGTTACCATTATACTATT
AATGGTACATCTCTGCCACGCGTTCAAGAGCACAAAGACTTAGGAGTAATTATAAGTCAC
GACTTAAAAACTACTACGCACTGCAATGCGGTTGCTTCCAAAGGCT

consensusID : consensus_9029#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 247
fasta sequence

                              [TGAGACTGATCGTTGTTATCTGCAAACAGATTTAGACGAATCAGTTAAATGGGCTCATGATTGGGGCCTGGAAGTTAATTCCAGGAAGAGCGTGTTCATGCACATCGGGCACGATATTAGTTATCACTATATCATTAATGGTACATCTCTGCCACGCAGTTCAAGAGCACAAAGACTTAGGAGCAACTATAAGTCACAGACATTGAAAACAACTACGCACTGCAATGCAGGTTGCTTCCAAAGGCTA]

[-] EMBL CD125939             [TGAGACTGATCGTTGTTATCTGCAAACAGATTTAGACGAATCAGTTAAATGGGCTCATGATTGGGGCCTGGAAGTTAATTCCAGGAAGAGCGTGTTCATGCACATCGGGCACGATATTAGTTATCACTATATCATTAATGGTACATCTCTGCCACGCAGTTCAAGAGCACAAAGACTTAGGAGCAACTATAAGTCACAGACATTGAAAACAACTACGCACTGCAATGCAGGTTGCTTCCAAAGGCTA]
[-] EMBL CD125941             [TGAGACTGATCGTTGTTATCTGCAAACAGATTTAGACGAATCAGTTAAATGGGCTCATGATTGGGGCCTGGAAGTTAATTCCAGGAAGAGCGTGTTCATGCACATCGGGCACGATATTAGTTATCACTATATCATTAATGGTACATCCCTCACACGC GTTCca                                                                                   ]
[+] EMBL CD126147             [TGAGACTGATCGTTGTTATCTGCAAACAGATTTAGACGAATCAGTTAAATGGGCTCATGATTGGGGCCTGGAAGTTAATTCCAGGAAGAGCGTGTTCATGCACATCGGGCACGATATTAGTTATCACTATATCAT                                                                                                                ]




>consensus_9029#1
TGAGACTGATCGTTGTTATCTGCAAACAGATTTAGACGAATCAGTTAAATGGGCTCATGA
TTGGGGCCTGGAAGTTAATTCCAGGAAGAGCGTGTTCATGCACATCGGGCACGATATTAG
TTATCACTATATCATTAATGGTACATCTCTGCCACGCAGTTCAAGAGCACAAAGACTTAG
GAGCAACTATAAGTCACAGACATTGAAAACAACTACGCACTGCAATGCAGGTTGCTTCCA
AAGGCTA

consensusID : consensus_9029#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 205
fasta sequence

                              [ACAATAAGAAATGAGACTGATCGTTGTTATCTGCAAGCAGATTTGGACGAATTAGTTAGGTGGGCTCATGATTGGGGCCTGGAAGTTAATTCCAGGAAGAGCGTGTTCATGCACATCGGGCGCGATATTAGTTACCACCATACTATTAATGGTGCATCTCTTCCACGCGTTCAAGAGCACAAAGACCCAAGAGTTATTACAAGTC]

[-] EMBL CD062884             [ACAATAAGAAATGAGACTGATCGTTGTTATCTGCAAGCAGATTTGGACGAATTAGTTAGGTGGGCTCATGATTGGGGCCTGGAAGTTAATTCCAGGAAGAGCGTGTTCATGCACATCGGGCGCGATATTAGTTACCATCATACTATTAATGGTGCA                                                 ]
[-] EMBL CD125966             [           TGAGACTGATCGTTGTTATCTGCAAGCAGATTTAGACGAATTAGTTAGGTGGGCTCATGATTGGGGCCTGGAAGTTAATTCCAGGAAGAGCGTGTTCATGTACATCGGGCACGATATTAATTACCACTATACCATTAATGGCACATCTCTTCCACGCGTTCAAGAGCACAAAGACCCAAGAGTTATTACAAGTC]
[-] EMBL CD062852             [           TGAGACTGATCGTTGTTATCTGCAAGCAGATTTGGACGAATTAGTTAGGTGGGCTCATCATTGGGGCCTGGAAGTTAATTCCACGAAGAGCGTGTTCATGCACATCGGGCGCGATATTAGTTGCCACCATACTATTAATGGTGCATCTCTGCCACGCGTTCAAGA                             ]




>consensus_9029#2
ACAATAAGAAATGAGACTGATCGTTGTTATCTGCAAGCAGATTTGGACGAATTAGTTAGG
TGGGCTCATGATTGGGGCCTGGAAGTTAATTCCAGGAAGAGCGTGTTCATGCACATCGGG
CGCGATATTAGTTACCACCATACTATTAATGGTGCATCTCTTCCACGCGTTCAAGAGCAC
AAAGACCCAAGAGTTATTACAAGTC

consensusID : consensus_9029#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 138
fasta sequence

                              [TTGGTCATAACTTTAGTCTGTATTATACCATTAATGGTACATCTCTGCCACGCGTTCATGCGCATAAAGACTTAGGAGTAATTATAAGTCACGACTTAAAAACTACAACGCACTGCAGTGCGGTTGCTTCCAAAGGCT]

[+] EMBL CD126005             [TTGGTCATAACTTTAGTCTGTATTATACCATTAATGGTACATCTCTGCCACGCGTTCATGCGCATAAAGACTTAGGAGTAATTATAAGTCACGACTTAAAAACTACAACGCACTGCAGTGCGGTTGCTTCCAAAGGCT]




>consensus_9029#3
TTGGTCATAACTTTAGTCTGTATTATACCATTAATGGTACATCTCTGCCACGCGTTCATG
CGCATAAAGACTTAGGAGTAATTATAAGTCACGACTTAAAAACTACAACGCACTGCAGTG
CGGTTGCTTCCAAAGGCT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9029#0      ACGCAAGCGATTATGTTGAGATCTGGAGAACATCTAACAAAAGATGACTGAGCGTTGTTA 60
consensus_9029#3      ------------------------------------------------------------
consensus_9029#1      --------------------------------------------TGAGACTGATCGTTGT 16
consensus_9029#2      ---------------------------------ACAATAAGAAATGAGACTGATCGTTGT 27
                                                                                  

consensus_9029#0      TCTGCTAGCAGATTGGCACGAATTAATTAGGTGGGGCTCTGGATTGGGGCCGTGGGAGTT 120
consensus_9029#3      ------------------------------------------------------------
consensus_9029#1      TATCTGCAAACAGATTTAGACGAATCAGTTAAATGGGCTCATGATTGGGGCCTGGAAGTT 76
consensus_9029#2      TATCTGCAAGCAGATTTGGACGAATTAGTTAGGTGGGCTCATGATTGGGGCCTGGAAGTT 87
                                                                                  

consensus_9029#0      AATTCCAGGAAGAGCGTGTTCATGCACATCGGGCACGATATTAGTTACCATTATACTATT 180
consensus_9029#3      ----------------------------TTGGTCATAACTTTAGTCTGTATTATACCATT 32
consensus_9029#1      AATTCCAGGAAGAGCGTGTTCATGCACATCGGGCACGATATTAGTTATCACTATATCATT 136
consensus_9029#2      AATTCCAGGAAGAGCGTGTTCATGCACATCGGGCGCGATATTAGTTACCACCATACTATT 147
                                                  * ** *   *  *****    *  ***  ***

consensus_9029#0      AATGGTACATCTCTGCCACGC-GTTCAAGAGCACAAAGACTTAGGAGTAATTATAAGTCA 239
consensus_9029#3      AATGGTACATCTCTGCCACGC-GTTCATGCGCATAAAGACTTAGGAGTAATTATAAGTCA 91
consensus_9029#1      AATGGTACATCTCTGCCACGCAGTTCAAGAGCACAAAGACTTAGGAGCAACTATAAGTCA 196
consensus_9029#2      AATGGTGCATCTCTTCCACGC-GTTCAAGAGCACAAAGACCCAAGAGTTATTACAAGTC- 205
                      ****** ******* ****** ***** * *** ******  * ***  * ** ***** 

consensus_9029#0      CGACTTAAAAACTACTACGCACTGCAATGCGGTTGCTTCCAAAGGCT---- 286
consensus_9029#3      CGACTTAAAAACTACAACGCACTGCAGTGCGGTTGCTTCCAAAGGCT---- 138
consensus_9029#1      CAGACATTGAAAACAACTACGCACTGCAATGCAGGTTGCTTCCAAAGGCTA 247
consensus_9029#2      ---------------------------------------------------