cluster # 9038

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Schistosoma mansoni
cluster # 9038 cluster # 9038 Sequences # 8 consensus # 7

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9038#0 length = 461 sequences # 1
consensus_9038#1 length = 348 sequences # 1
consensus_9038#2 length = 279 sequences # 1

consensus_9038#3 length = 269 sequences # 1
consensus_9038#4 length = 139 sequences # 2
consensus_9038#5 length = 137 sequences # 1
consensus_9038#6 length = 89 sequences # 1

consensusID : consensus_9038#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 461
fasta sequence

                              [CACTCTATGGGTCAGTTATGTTCTTTGCGACATTTTTCGGTTCACTCATCAAACACATGTGCAGCACTCACCGCTTATCATCTTTTAGAGATTTCATCGTGCCACCTTCGCTTTCGCTCTGTATTCTTCGACCCTTATTGATTTTCACAGCAGTTATCAGTTTTTCCAAACTGACTGCAAGTTGATCAGAAGCTTTGCACAAGGGAACCACGACTTATCTTCACGGTTATACTTCTGTACTTACAGTTAGTCTGTTAAATATAGATATAACTAGAAATCGACGCTTACGAACAGTCGTCAACGACACCTACTGACTTTCTACTCTGTAACGAGGGCAGTACAAACATCGGCATCGATTGATAATACACTTATCGTACTATCACTGTGACATCACTACTCTTGCGGCAAACTTAACTTTTCTCATCTGAGGAACTCATGCACTCGTGTTGTCGATCTCAAGG]

[+] EMBL CD060197             [CACTCTATGGGTCAGTTATGTTCTTTGCGACATTTTTCGGTTCACTCATCAAACACATGTGCAGCACTCACCGCTTATCATCTTTTAGAGATTTCATCGTGCCACCTTCGCTTTCGCTCTGTATTCTTCGACCCTTATTGATTTTCACAGCAGTTATCAGTTTTTCCAAACTGACTGCAAGTTGATCAGAAGCTTTGCACAAGGGAACCACGACTTATCTTCACGGTTATACTTCTGTACTTACAGTTAGTCTGTTAAATATAGATATAACTAGAAATCGACGCTTACGAACAGTCGTCAACGACACCTACTGACTTTCTACTCTGTAACGAGGGCAGTACAAACATCGGCATCGATTGATAATACACTTATCGTACTATCACTGTGACATCACTACTCTTGCGGCAAACTTAACTTTTCTCATCTGAGGAACTCATGCACTCGTGTTGTCGATCTCAAGG]




>consensus_9038#0
CACTCTATGGGTCAGTTATGTTCTTTGCGACATTTTTCGGTTCACTCATCAAACACATGT
GCAGCACTCACCGCTTATCATCTTTTAGAGATTTCATCGTGCCACCTTCGCTTTCGCTCT
GTATTCTTCGACCCTTATTGATTTTCACAGCAGTTATCAGTTTTTCCAAACTGACTGCAA
GTTGATCAGAAGCTTTGCACAAGGGAACCACGACTTATCTTCACGGTTATACTTCTGTAC
TTACAGTTAGTCTGTTAAATATAGATATAACTAGAAATCGACGCTTACGAACAGTCGTCA
ACGACACCTACTGACTTTCTACTCTGTAACGAGGGCAGTACAAACATCGGCATCGATTGA
TAATACACTTATCGTACTATCACTGTGACATCACTACTCTTGCGGCAAACTTAACTTTTC
TCATCTGAGGAACTCATGCACTCGTGTTGTCGATCTCAAGG

consensusID : consensus_9038#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 348
fasta sequence

                              [CGAAAGAAAAACTGACTCTATCTGTCCACTTCTGTCAATTGTTCCATCTACTTTTTCATTTATCTAATAGTCATGGCATAGATCTGAAACAATTTTACCTGTCAAAAAGTATCTATGGAATTAAAAAATCATTGATGAATTACGATCGACTAATAACTAATGAAAAGAGTCAACTTTCAAGAGAACGTTACGACTGAAATGAACAACACGAGCTTTTAATGAAACGGCATCGATTGAAGAGTATTTCAATTGTACTTACTACGAGTACTTTAAATTACAGATTATCGATGAAATAAATACAGAATGTGTGACAGATCACTGGGAAACGTCGAACGACTACCTATGCAA]

[+] EMBL CD162129             [CGAAAGAAAAACTGACTCTATCTGTCCACTTCTGTCAATTGTTCCATCTACTTTTTCATTTATCTAATAGTCATGGCATAGATCTGAAACAATTTTACCTGTCAAAAAGTATCTATGGAATTAAAAAATCATTGATGAATTACGATCGACTAATAACTAATGAAAAGAGTCAACTTTCAAGAGAACGTTACGACTGAAATGAACAACACGAGCTTTTAATGAAACGGCATCGATTGAAGAGTATTTCAATTGTACTTACTACGAGTACTTTAAATTACAGATTATCGATGAAATAAATACAGAATGTGTGACAGATCACTGGGAAACGTCGAACGACTACCTATGCAA]




>consensus_9038#1
CGAAAGAAAAACTGACTCTATCTGTCCACTTCTGTCAATTGTTCCATCTACTTTTTCATT
TATCTAATAGTCATGGCATAGATCTGAAACAATTTTACCTGTCAAAAAGTATCTATGGAA
TTAAAAAATCATTGATGAATTACGATCGACTAATAACTAATGAAAAGAGTCAACTTTCAA
GAGAACGTTACGACTGAAATGAACAACACGAGCTTTTAATGAAACGGCATCGATTGAAGA
GTATTTCAATTGTACTTACTACGAGTACTTTAAATTACAGATTATCGATGAAATAAATAC
AGAATGTGTGACAGATCACTGGGAAACGTCGAACGACTACCTATGCAA

consensusID : consensus_9038#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 279
fasta sequence

                              [CTCATAGTCACATGCTAGCATTTCAATTTTTGACTGCATAGTGACAGTACTTATGTACACTTTTAGATACGTATGACACTTTCGTTTAATACACTCACCCCTCGCTTGACTCTGTAATTTATCAGGTATTGTACAATTTTTTCCCTACATGGTAACACTATTTACATACCACTTCAGTGTTATTTTTCGAAAACAGACACTTTTTTTATAAATGTGCTATTTGCTACGAGGGGGCTATGTAGTATCGGTTTATATGTTAAGCCCATATACTTCATTCTA]

[+] EMBL CD165745             [CTCATAGTCACATGCTAGCATTTCAATTTTTGACTGCATAGTGACAGTACTTATGTACACTTTTAGATACGTATGACACTTTCGTTTAATACACTCACCCCTCGCTTGACTCTGTAATTTATCAGGTATTGTACAATTTTTTCCCTACATGGTAACACTATTTACATACCACTTCAGTGTTATTTTTCGAAAACAGACACTTTTTTTATAAATGTGCTATTTGCTACGAGGGGGCTATGTAGTATCGGTTTATATGTTAAGCCCATATACTTCATTCTA]




>consensus_9038#2
CTCATAGTCACATGCTAGCATTTCAATTTTTGACTGCATAGTGACAGTACTTATGTACAC
TTTTAGATACGTATGACACTTTCGTTTAATACACTCACCCCTCGCTTGACTCTGTAATTT
ATCAGGTATTGTACAATTTTTTCCCTACATGGTAACACTATTTACATACCACTTCAGTGT
TATTTTTCGAAAACAGACACTTTTTTTATAAATGTGCTATTTGCTACGAGGGGGCTATGT
AGTATCGGTTTATATGTTAAGCCCATATACTTCATTCTA

consensusID : consensus_9038#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 269
fasta sequence

                              [GTAGTTCCCTCTCCATTGAGTATAGCGTGGAAGGCCTGGAACCTATTGCTGAGGACTATCTTGAATTCGTTGATTCTGTCATTATCTGCGAAGAAAAGTTGTAGTAAACTTTTGTGATGTTGTCCGCCCCGTTGTCCAATGCTTCTTGAGTTTCAGTTTCATCTTGACGACCAGCAAGTGATGATCTGACGTCGTATCAGCTCCTCTCTTGATTCTCACATCCTCCATCGTCCTTCTGAAATTTGTATTGATGCAGATATGGCCGATTT]

[+] EMBL CD091682             [GTAGTTCCCTCTCCATTGAGTATAGCGTGGAAGGCCTGGAACCTATTGCTGAGGACTATCTTGAATTCGTTGATTCTGTCATTATCTGCGAAGAAAAGTTGTAGTAAACTTTTGTGATGTTGTCCGCCCCGTTGTCCAATGCTTCTTGAGTTTCAGTTTCATCTTGACGACCAGCAAGTGATGATCTGACGTCGTATCAGCTCCTCTCTTGATTCTCACATCCTCCATCGTCCTTCTGAAATTTGTATTGATGCAGATATGGCCGATTT]




>consensus_9038#3
GTAGTTCCCTCTCCATTGAGTATAGCGTGGAAGGCCTGGAACCTATTGCTGAGGACTATC
TTGAATTCGTTGATTCTGTCATTATCTGCGAAGAAAAGTTGTAGTAAACTTTTGTGATGT
TGTCCGCCCCGTTGTCCAATGCTTCTTGAGTTTCAGTTTCATCTTGACGACCAGCAAGTG
ATGATCTGACGTCGTATCAGCTCCTCTCTTGATTCTCACATCCTCCATCGTCCTTCTGAA
ATTTGTATTGATGCAGATATGGCCGATTT

consensusID : consensus_9038#4
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 139
fasta sequence

                              [AAGGTCTGTGTATGCTGCCTCGATGTCCGGTGGATTCAATGGAGCTGGTCTATTCAGCAGTTCCTCGAAGCATTCTATCCTTCTGTTCTTGAATCTTCGTGGTTGTCCTTCCTTCTATGTTCTTGACTGGTCTCTCCGG]

[+] EMBL CD192016             [AAGGTCTGTGTATGCTGCCTCGATGTCCGGTGGATTCAATGGAGCTGGTCTATTCAGCAGTTCCTCGAAGCATTCTATCCTTCTGTTCTTGAATCTTCGTGGTTGTCCTTCCTTCTATGTTCTTGACTGGTCTCTCCGG]
[+] EMBL CD192113             [   GTCTGTGTATGCTGCCTCGATGTCCGGTGGATTCAATGGAGCTGGTCTATTCAGCAGTTCCTCGAAGCATTCTATCCTTCTGTTCTTGAATCTTCGTGGTTGTCCTTCCTTCTATGTTCTTGACTGGTCTCTCCGG]




>consensus_9038#4
AAGGTCTGTGTATGCTGCCTCGATGTCCGGTGGATTCAATGGAGCTGGTCTATTCAGCAG
TTCCTCGAAGCATTCTATCCTTCTGTTCTTGAATCTTCGTGGTTGTCCTTCCTTCTATGT
TCTTGACTGGTCTCTCCGG

consensusID : consensus_9038#5
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 137
fasta sequence

                              [GTGATAGCGGTTATGGCGATAGTGGATATGGTGGAGGCTGTACTGGTGGTGACTGTGGCGGCGGCTATGGTGGTGGCTATGGTGGAGGTTGCAGTGGTGGAGATTGTGGTAATTACGGTGGTGGCTATGGTGGTGAT]

[+] EMBL CD067878             [GTGATAGCGGTTATGGCGATAGTGGATATGGTGGAGGCTGTACTGGTGGTGACTGTGGCGGCGGCTATGGTGGTGGCTATGGTGGAGGTTGCAGTGGTGGAGATTGTGGTAATTACGGTGGTGGCTATGGTGGTGAT]




>consensus_9038#5
GTGATAGCGGTTATGGCGATAGTGGATATGGTGGAGGCTGTACTGGTGGTGACTGTGGCG
GCGGCTATGGTGGTGGCTATGGTGGAGGTTGCAGTGGTGGAGATTGTGGTAATTACGGTG
GTGGCTATGGTGGTGAT

consensusID : consensus_9038#6
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 89
fasta sequence

                              [TATAGAATACTTCGAGGAACTGCTGAATAGACCAGCTCCACTGAATCCATCGGACATCGAAGCAGCACACANCAACCTTCCCATAGCTG]

[+] EMBL CD114914             [TATAGAATACTTCGAGGAACTGCTGAATAGACCAGCTCCACTGAATCCATCGGACATCGAAGCAGCACACANCAACCTTCCCATAGCTG]




>consensus_9038#6
TATAGAATACTTCGAGGAACTGCTGAATAGACCAGCTCCACTGAATCCATCGGACATCGA
AGCAGCACACANCAACCTTCCCATAGCTG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9038#0      CACTCTATGGGTCAGTTATGTTCTTTGCGACATTTTTCGGTTCACTCATCAAACACATGT 60
consensus_9038#6      ------------------------------------------------------------
consensus_9038#4      ------------------------------------------------------------
consensus_9038#3      ------------------------------------------------------------
consensus_9038#1      --------------CGAAAGAAAAACTGACTCTATCTGTCCACTTCTGTCAATTGTTCCA 46
consensus_9038#5      ------------------------------------------------------------
consensus_9038#2      -----------------------------------------------CTCATAGTCACAT 13
                                                                                  

consensus_9038#0      GCAGCACTCACCGCTTATCATCTTTTAGAGATTTCATCGTGC----CACCTTCGCTTTCG 116
consensus_9038#6      -------------------------TATAGAATACTTCGAGG----AACTGCTGAATAGA 31
consensus_9038#4      -----------------AAGGTCTGTGTATGCTGCCTCGATG----TCCGGTGGATTCAA 39
consensus_9038#3      GTAGTTCCCTCTCCATTGAGTATAGCGTGGAAGGCCTGGAACCTATTGCTGAGGACTATC 60
consensus_9038#1      TCTACTTTTTCATTTATCTAATAGTCATGGCATAGATCTGAAACAATTTTACCTGTCAAA 106
consensus_9038#5      ------GTGATAGCGGTTATGGCGATAGTGGATATGGTGGAGGCTGTACTGGTGGTGACT 54
consensus_9038#2      GCTAGCATTTCAATTTTTGACTGCATAGTGACAGTACTTATG--TACACTTTTAGATACG 71
                                                                                  

consensus_9038#0      CTCTGTATTCTTCGACCCTTATTGATTT----TCACAGCAGTTATCAGTTTTTCCA-AAC 171
consensus_9038#6      CCAGCTCCACTGAATCCATCGGACATCG----AAGCAGCACACANCAACCTTCCCATAGC 87
consensus_9038#4      TGGAGCTGGTCTATTCAGCAGTTCCTCG----AAGCATTCTATCCTTCTGTTCTTGAATC 95
consensus_9038#3      TTGAATTCGTTGATTCTGTCATTATCTGCGAAGAAAAGTTGTAGTAAACTTTTGTGATGT 120
consensus_9038#1      AAGTATCTATGGAATTAAAAAATCATTG----ATGAATTACGATCGACTAATAACTAATG 162
consensus_9038#5      GTGGCGGCGGCTATGGTGGTGGCTATGGTGG-AGGTTGCAGTGGTGGAGATTGTGGTAAT 113
consensus_9038#2      TATGACACTTTCGTTTAATACACTCACCC--CTCGCTTGACTCTGTAATTTATCAGGTAT 129
                                                                                  

consensus_9038#0      TGACTGCAAGTTGATCAGAAGCTTTGCACAAGGGAACCACGACTTATCTTCACGGTTATA 231
consensus_9038#6      TG---------------------------------------------------------- 89
consensus_9038#4      TTCGTGGTTGTCCTTCCTTCTATGTTCTTGACTGGTCTCTCCGG---------------- 139
consensus_9038#3      TGTCCGCCCCGTTGTCCAATGCTTCTTGAGTTTCAGTTTCATCTTGACGACCAGCAAGTG 180
consensus_9038#1      AAAAGAGTCAACTTTCAAGAGAACGTTACGACTGAAATGAACAACACGAGCTTTTAATGA 222
consensus_9038#5      TACGGTGGTGGCTATGGTGGTGAT------------------------------------ 137
consensus_9038#2      TGTACAATTTTTTCCCTACATGGTAACACTATTTACATACCACTTCAGTGTTATTTTTCG 189
                                                                                  

consensus_9038#0      CTTCTGTACTTACAGTTAGTCTGTTAAATATAGATATAACTAGAAATCGACGCTTACGAA 291
consensus_9038#6      ------------------------------------------------------------
consensus_9038#4      ------------------------------------------------------------
consensus_9038#3      ATGATCTGACGTCGTATCAGCTCCTCTCTTGATTCTCACATCCTCCATCGTCCTTCTGAA 240
consensus_9038#1      AACGGCATCGATTGAAGAGTATTTCAATTGTACTTACTACGAGTACTTTAAATTACAGAT 282
consensus_9038#5      ------------------------------------------------------------
consensus_9038#2      AAAACAGACACTTTTTTTATAAATGTGCTATTTGCTACGAGGGGGCTATGTAGTATCGGT 249
                                                                                  

consensus_9038#0      CAGTCGTCAACGACACCTACTGACTTTCTACTCTGTAACGAGGGCAGTACAAACATCGGC 351
consensus_9038#6      ------------------------------------------------------------
consensus_9038#4      ------------------------------------------------------------
consensus_9038#3      ATTTGTATTGATGCAGATATGGCCGATTT------------------------------- 269
consensus_9038#1      TATCGAT--GAAATAAATACAGAATGTGTGACAGATCACTGGGAAACGTCGAACGACTAC 340
consensus_9038#5      ------------------------------------------------------------
consensus_9038#2      TTATATGTTAAGCCCATATACTTCATTCTA------------------------------ 279
                                                                                  

consensus_9038#0      ATCGATTGATAATACACTTATCGTACTATCACTGTGACATCACTACTCTTGCGGCAAACT 411
consensus_9038#6      ------------------------------------------------------------
consensus_9038#4      ------------------------------------------------------------
consensus_9038#3      ------------------------------------------------------------
consensus_9038#1      CTATGCAA---------------------------------------------------- 348
consensus_9038#5      ------------------------------------------------------------
consensus_9038#2      ------------------------------------------------------------
                                                                                  

consensus_9038#0      TAACTTTTCTCATCTGAGGAACTCATGCACTCGTGTTGTCGATCTCAAGG 461
consensus_9038#6      --------------------------------------------------
consensus_9038#4      --------------------------------------------------
consensus_9038#3      --------------------------------------------------
consensus_9038#1      --------------------------------------------------
consensus_9038#5      --------------------------------------------------
consensus_9038#2      --------------------------------------------------