These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9049#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 977 fasta sequence [TGCATCCTTTTCTTTGTGATTTTACCTATTATTGGATTTGGAGTATATTATGTATTTATACGTTCTGGTAGATGTTTATTGAGTACATCAAAGGAGTTTATTTATACAAGTAGTGGTTTACGTAAACCATTTGATAAAAATTGTACAGAATGCTTTTGCCAACTATTCAGTTTCCTAGCATCTTTCACAGAACTATTCACAAGATCTATTCGTACAACAGTAATCGATGGTAGTAATACAGTCACTGTATCAAACATGACGAAGTCAAAAATTCAAAACAAAGTGACAGACTCGAAAAACCGTACCCCTTACTTGCATTCGCAGCCGCCGATCCAAAAGTCTCAGAGAATAAGGAATTCATCAACGGTCAAACCAATGGTTACTGTAATATCACATCCAACGGTAAACTATCAAACGGTTCTTACAGACCAGTTAAACCAAAAACAGTCAGCTTTGAACCAGTGCCCTCGAAGAGAACAACTTCCAACTTCAGTGGAGTCAAAACAACTTGCTCACAAAACACCTTGTTCACTAGTTCATCAACAGAAAATAGCACGAAGTCAGAAAACAAATATCAGCGAACAGATAAAAACGGCATCATCAAAGAAGATAGTAAAGTAACGATCCCAACTAGTCACCTGAAGTATGATGAACGTCTCTCCACTGCTTTTGAACATCACCAACAACATTTACAATCGAACAGTACATCCATAAAACCAACTACATTCATTTCAGAACCACGTCTTGAAACAATGACTTATGAAGGACCGATGTGTTCTTTA-AATGATCCAGTTATGATTAACACATTACAACGTAAATCTAAAAACACACTTGATAATCAATCAAAATCTGCTATACTTAATAATTCTCAGTCATCTATTAATAAACANAGTTGTCAACAAAAAACAATCACTAATCAACACNNATACACACAACTACTAACAAACACAGTTGTAACAGGTGGACGTAAACCACTT] [-] EMBL CD148686 [TGCATCCTTTTCTTTGTGATTTTACCTATTATTGGATTTGGAGTATATTATGTATTTATACGTTCTGGTAGATGTTTATTGAGTACATCAAAGGAGTTTATTTATACAAGTAGTGGTTTACGTAAACCATTTGATAAAAATTGTACAGAATGCTTTTGCCAACTATTCAGTTTCCTAGCATCTTTCACAGAACTATTCACAAGATCTATTCGTACAACAGTAATCGATGGTAGTAATACAGTCACTGTATCAAACATGACGAAGTCAAAAATTCAAAACAAAGTGACAGACTCGAAAAACCGTACCCCTTACTTGCATTCGCAGCCGCCGATCCAAAAGTCTCAGAGAATAAGGAATTCATCAACGGTCAAACCAATGGTTACTGTAATATCACATCCAACGGTAAACTATCAAACGGTTCTTACAGACCAGTTAAACCAAAAACAGTCAGCTTTG ] [+] EMBL CD188341 [ TACGTAAACCATTTGATAAAAATTGTACAGAATGCTTTTGCCAACTATTCAGTTTCCTAGCATCTTTCACAGAACTATTCACAAGATCTATTCGTACAACAGTAATCGATGGTAGTAATACAGTCACTGTATCAAACATGACGAAGTCAAAAATTCAAAACAAAGTGACAGACTCGAAAAACCGTACCCCTTACTTGCATTCGCAGCCGCCGATCCAAAAGTCTCAGAGAATAAGGAATTCATCAACGGTCAAACCAATGGTTACTGTAATATCACATCCAACGGTAAACTATCAAACGGTTCTTACAGACCAGTTAAACCAAAAACAGTCAGCTTTGAA ] [-] EMBL CD065333 [ TTGTACAGAATGCTTTTGCCAACTATTCAGTTTCCTAGCATCTTTCACAGAACTATTCACAAGATCTATTCGTACAACAGTAATCGATGGTAGTAATACAGTCACTGTATCAAACAGGACGAAGTCAAAAATTCAAAACAAAGTGACAGACTCGATTAACCGTACCCCTTACTTGCATTCGCACCCGCCGATCCAAAAGTCTCAGAGAATAAGGAATTCATCAACGGTCAAACCAATGGTTACTGTAATATCACATCCAACGGTAAACTATCAAACGGTTCTTACAGACCAGTTAAACCTATACTAGTCAGCTTTGAA ] [+] EMBL CD152970 [ AAGTCTCAGAGAATAAGGAATTCATCAACGGTCAAACCAATGGTTACTGTAATATCACATCCAACGGTAAACTATCAAACGGTTCTTACAGACCAGTTAAACCAAAAACAGTCAGCTTTGAACCAGTGCCCTCGAAGAGAACAACTTCCAACTTCAGTGGAGTCAAAACAACTTGCTCACAAAACACCTTGTTCACTAGTTCATCAACAGAAAATAGCACGAAGTCAGAAAACAAATATCAGCGAACAGATAAAAACGGCATCATCAAAGAAGATAGTAAAGTAACGATCCCAACTAGTCACCTGAAGTATGATGAACGTCTCTCCACTGCTTTTGAACATCACCAACAACATTTACAATCGAACAGTACATCCATAAAACCAACTACATTCATTTCAGAACCACGTCTTGAAACAATGACTTATGAAGGACCGATGTGTTCTTTA AATGATCCAGTTATGATTAACACATTACAACGTAAATCTAAAAACACACTTGATAATCAATCAAAATCTGCTATACTTAATAATTCTCAGTCATCTATTAATAAACANAGTTGTCAACAAAAAA ] [+] EMBL CD068544 [ GAT AAAACGGCATCATCACAGAAGATAGTACAGTACCGATCCCAACTAGTCACCTGAAGTATGATGAACGTCTCTCCACTGCTTTCGAACATCACCAACAACATTTACAATCGAACAGTACATCCATAAAACCAACTACATTCATTACAGAACCACGTCTTGAAACAATGCCTTATGAAGGACCGATGTGTTCTTTACAATGATCCAGTTATGATCAACACATTACAACGTAAATCTAAACACACACTTGATAATCAATCACAATCTGCTATACTTA ] [+] EMBL CD141471 [ AGATAGTAAAGTAACGATCCCAACTAGTCACCTGAAGTATGATGAACGCCTCTCCACTGCTTTTGAACATCACCAACAACATTTACAATCGAACAGTACATCCATAAAACCAACTACATTCATTTCAGAACCACGTCTTGAAACAATGACTTATGAAGGACCGATGTGTTCTTTA AATGATCCAGTTATGATTAACACATTACAACGTAAATCTAAAAACACACTTGATAATCAATCAAAATCTGCTATACTTAATAATTCTCAGTCATCTATTAATAAACAAAGTTGTCAACAAAAAACAATCACTAATCAACACNNATACACACAACTACTAACAAACACAGTTGTAACAGGTGGACGTAAACCACTT] [+] EMBL CD179750 [ AAAGTAACGATCCCAACTAGTCACCTGAAGTATGATGAACGTCTCTCCACTGCTTTTGAACATCACCAACAACATTTACAATCGAACAGTACATCCATAAAACCAACTACATTCATTTCAGAACCACGTCTTGAAACAATGACTTATGAAGGACCGATGTGTTCTTTA AATGATCCAGTTATGATTAACACATTACAACGTAAATCTAAAAACACACTTGATAATCAATCAAAATCTGCTATA ] consensusID : consensus_9049#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 586 fasta sequence [TCCTAAGTTGATTACAATTTACTGAATAACTCTATCGGAAAATTGTGTAGATACAAAAATTTTGTCTAGCAGAAAAATCGTTATGAAAGAGTAATTTTTCAAAGTGGATTTCTAAAAAGGAATGAGAAGGAATTTTATACATATATAATCAATTATCAATGAATGAATGGAGAAAATAAATTCATTGGTGAATTATTTCAGCATGCAAATCATGAATGATGAACAGAAAGAAAAATGTTTATAGAATAAGTTATTCTTGTATATTCACTAAAATACAAACATTGTTTATCTGAATAAATGAGAATTAACCCTACTAAACAATTATTTGTTATGATGATTACTTGATACAGTGACTGTATTACTACCATCGATTACTGTTGTACGAATAGATCTTGTGAATAGTTCTGTGAAAGATGCTAGGAAACTGGAAAATATTTTTTTTTCAAATATACAAAAAGGAATACTAAAGTAGTTATTTAAAGCAACAACAGTAGAATATAATATTCAAGTATGCATGAATAAAGTTTATGCACTAAAGTGAATTCACTGACGCTTGGAATGTGTTATAACTCAGAATTGCATGGTA] [+] EMBL CD153979 [TCCTAAGTTGATTACAATTTACTGAATAACTCTATCGGAAAATTGTGTAGATACAAAAATTTTGTCTAGCAGAAAAATCGTTATGAAAGAGTAATTTTTCAAAGTGGATTTCTAAAAAGGAATGAGAAGGAATTTTATACATATATAATCAATTATCAATGAATGAATGGAGAAAATAAATTCATTGGTGAATTATTTCAGCATGCAAATCATGAATGATGAACAGAAAGAAAAATGTTTATAGAATAAGTTATTCTTGTATATTCACTAAAATACAAACATTGTTTATCTGAATAAATGAGAATTAACCCTACTAAACAATTATTTGTTATGATGATTACTTGATACAGTGACTGTATTACTACCATCGATTACTGTTGTACGAATAGATCTTGTGAATAGTTCTGTGAAAGATGCTAGGAAACTGGAAAATATTTTTTTTTCAAATATACAAAAAGGAATACTAAAGTAGTTATTTAAAGCAACAACAGTAGAATATAATATTCAAGTATGCATGAATAAAGTTTATGCACTAAAGTGAATTCACTGACGCTTGGAATGTGTTATAACTCAGAATTGCATGGTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9049#0 TGCATCCTTTTCTTTGTGATTTTACCTATTATTGGATTTGGAGTATATTATGTATTTATA 60 consensus_9049#1 ------------------------------------------------------------ consensus_9049#0 CGTTCTGGTAGATGTTTATTGAGTACATCAAAGGAGTTTATTTATACAAGTAGTGGTTTA 120 consensus_9049#1 ------------------------------------------------------------ consensus_9049#0 CGTAAACCATTTGATAAAAATTGTACAGAATGCTTTTGCCAACTATTCAGTTTCCTAGCA 180 consensus_9049#1 ------------------------------------------------------------ consensus_9049#0 TCTTTCACAGAACTATTCACAAGATCTATTCGTACAACAGTAATCGATGGTAGTAATACA 240 consensus_9049#1 ------------------------------------------------------------ consensus_9049#0 GTCACTGTATCAAACATGACGAAGTCAAAAATTCAAAACAAAGTGACAGACTCGAAAAAC 300 consensus_9049#1 --------------------------------------------------TCCTAAGTTG 10 * ** consensus_9049#0 CGTACCCCTTACTTGCATTCGCAGCCGCCGATCCAAAAGTCTCAGAGAATAAGGAATTCA 360 consensus_9049#1 ATTACAATTTACTGA-----ATAAC--TCTATCGGAAAATTGTGTAGATACAAAAATT-- 61 *** ***** * * * *** *** * *** * **** consensus_9049#0 TCAACGGTCAAACCAATGGTTACTGTAATATCACATCCAACGGTAAACTATCAAACGGTT 420 consensus_9049#1 TTGTCTAGCAGAAAAATCGTTATGAAAGAGTAATTTTTCAAAGTGGATTTCTAAAAAGGA 121 * * ** * *** **** * * * * * ** * * *** * consensus_9049#0 CTTACAGACCAGTTAAACCAAAAACAGTCAGCTTTGAACCAGTGCCCTCGAAGAGAACAA 480 consensus_9049#1 ATGAGAAGGAATTTTATACATATATAATCAATTATCAATGAATGAA--TGGAGAAAATAA 179 * * * * ** * ** * * * *** * * ** * ** * *** ** ** consensus_9049#0 CTTCCAACTTCAGTGGAGTCAAAACAACTTGCTCACAAAACACCTTGTTCACTAGTTCAT 540 consensus_9049#1 ATTC----ATTGGTGAA-TTATTTCAGCATGCAAATCATGAA---TGATGAACAGAAAGA 231 *** * *** * * * ** * *** * * * ** * * ** consensus_9049#0 CAACAGAAAATAGCACGAAGTCAGAAAACAAATATCAGCGAACAGATAAAAACGGCATCA 600 consensus_9049#1 AAAATGTTTATAGAAT-AAGTTATTCT-TGTATATTCACTAAAATACAAACATTGT-TTA 288 ** * **** * **** * **** * ** * * *** * * * * consensus_9049#0 TCAAAGAAGATAGTAAAGTAACGATCCCAACTAGTCACCTGAAGTATGATGAACGTCTCT 660 consensus_9049#1 TCTGAATAAATGA-GAATTAACCCTACTAAACAATTATTTG--TTATGATGATTA-CTTG 344 ** * * ** ** **** * * ** * * * ** ******** ** consensus_9049#0 CCACTGCTTTTGAACATCACCAACAACATTTACAATCGAAC-AGTACATCCATAAAACCA 719 consensus_9049#1 ATACAGTGACTG--TATTACTACCATCGATTACTGTTGTACGAATAGATCT-TGTGAATA 401 ** * ** ** ** * ** * **** * * ** * ** *** * * * consensus_9049#0 ACTACATTCATTTCAGAACCACGTCTTGAAACAATGACTTATGAAGGA--CCGATGTGTT 777 consensus_9049#1 GTTCTGTGAAAGATGCTAGGAAACTGGAAAATATTTTTTTTTCAAATATACAAAAAGGAA 461 * * * * * *** * * ** * ** * * * * consensus_9049#0 CTTTAAATGATCCAGTTATGATTAACACATTACAACGTAA-ATCTAAAAACACACTTGAT 836 consensus_9049#1 TACTAAAGTAGTTATTTAAAGCAACAACAGTAGAATATAATATTCAAGTATGCATGAATA 521 **** * * *** * *** ** ** *** ** ** * ** consensus_9049#0 AATCAATCAAAATCTGCTATACTTAATAATTCTCAGTCATCTATTAATAAACANAGTTGT 896 consensus_9049#1 AAGTTTATGCACTAAAGTGAATTCACTGACGCTTGGA-ATGTGTTATAACTCAGAATTGC 580 ** * * * * * * * * ** * ** * *** * ** * *** consensus_9049#0 CAACAAAAAACAATCACTAATCAACACNNATACACACAACTACTAACAAACACAGTTGTA 956 consensus_9049#1 ATGGTA------------------------------------------------------ 586 * consensus_9049#0 ACAGGTGGACGTAAACCACTT 977 consensus_9049#1 --------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||