These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9059#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 922 fasta sequence [AATTCACATTTTCATGTTGCATTAACTGATTTCGGTTGTGCTATTCGAACTGGACATCATCATCATCATCATCGTATTGATGGTAATAATAATGAAGAAGAATATCTGAATCATAGTGGAAATTTGGCATTATTAGCTCCAGAAATAGTACAAATCATTGATTCACTTAAAGATAATTCAAACAATATTATAACTAATAAAGATTATAAACATTCAGATATATGGGCAATTGCTACATTAATTTATCCTTTATTTGGAATATCTAATCCATTTGTTGATGGAACATTTTCTTCAGTAAACTATACTGAAGATTCTTTGCCTGAACTTCCACATGAAGCACCAAAAATAATGACATGGATTTTACATCAATGTCTTAAACGTAATCCATCCGAAAGAACTAATGCTGATGAGATTGCCGATATTTTGCATACTTGGTGTCTTATTCGACATTTTCACACTAGACAAGAAGTTGATATTTTTAAAGATTTTTCTCAATATCCAACAAATCTTATGACAGATATTGGTTCTNNNNNNNNNNNNNNNAAAAATTCGACAAAATCCCATCAAATACAAAGTAATAAGCTCAACAATCGTTTATGTGATCTCCTAAATGTATGTTGGGCAGGTGATTGGTTATCTGGAGCCGCTCGTCCTCCAAATGGTGTACGCTCTCTGTGGCGCTTTGTTTAAATATTGTACACCAATTGGAGTGTTTCGATTTCCAACATGTGTTGGATTCCTAACTACTAATATTAGTAGTCTGACTTCTTGAAAAATAATTCGAAAAGACTAAATTGCTTATTCTTTTATGCTTATTTATTTACTACTTTCTTCATAATNNNNNNNNNNNNNNNNNNNNCATTTACAGTCATTATATTTTACAGACTCTGCATATAGTGTCATCCTGTCTTTACTCATAAGG] [+] EMBL CD140795 [AATTCACATTTTCATGTTGCATTAACTGATTTCGGTTGTGCTATTCGAACTGGACATCATCATCATCATCATCGTATTGATGGTAATAATAATGAAGAAGAATATCTGAATCATAGTGGAAATTTGGCATTATTAGCTCCAGAAATAGTACAAATCATTGATTCACTTAAAGATAATTCAAACAATATTATAACTAATAAAGATTATAAACATTCAGATATATGGGCAATTGCTACATTAATTTATCCTTTATTTGGAATATCTAATCCATTTGTTGATGGAACATTTTCTTCAGTAAACTATACTGAAGATTCTTTGCCTGAACTTCCACATGAAGCACCAAAAATAATGACATGGATTTTACATCAATGTCTTAAACGTAATCCATCCGAAAGAACTAATGCTGATGAGATTGCCGAT ] [+] EMBL CD081018 [ CTTTATTTGGAATATCTAATCCATTTGTTGATGGAACATTTTCTTCAGTAAACTATACTGAAGATTCTTTGCCTGAACTTCCACATGAAGCACCAAAAATAATGACATGGATTTTACATCAATGTCTTAAACGTAATCCATCCGAAAGACCTAATGCTGATGAGATTGCAGATATTTTGCATACTTGGTGTCTTATTCGACATTTTCACACTAGACAAGAAGTTGATATTTTTAAAGATTTTTCTCAATATCCAACAAATCTTATGACAGATATTGGTTCTNNNNNNNNNNNNNNNAAAAATTCGACAAAATCCCATCAAATACAAAGTAATAAGCTCAACAATCGTTTATGTGATCTCCTAAATGTATGTTGGGCAGGTGATTGGTTATCTGGAGCCGCTCGTCCTCCAAATGGTGTACGCTCTCTGTGGCGCTTTGTTTAAATATTGTACACCAATTGGAGTGTTTCGATTTCCAACATGTGTTGGATTCCTAACTACTAATATTAGTAGTCTGACTTCTTGAAAAATAATTCGAAAAGACTAAATTGCTTATTCTTTTATGCTTATTTATTTACTACTTTCTTCATAATNNNNNNNNNNNNNNNNNNNNCATTTACAGTCATTATATTTTACAGACTCTGCATATAGTGTCATCCTGTCTTTACTCATAAGG] consensusID : consensus_9059#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 611 fasta sequence [CCAAAAATAATGACATGGATTTTACATCAATGTCTTAAACGTAATCCATCCGAAAGACCTAATGCTGATGAGATTGCAGATATTTTGCATACTTGGTGTCTTATTCGACATTTTCACACTAGACAAGAAGTTGATATTTTTAAAGATTTTTCTCAATATCCAACAAATCTTATGACAGATATTGGTTCTTTGACCGCAGAGTTTAAAAATTCGACAAAATCCCATCAAATACAAAGTAATAAGCTCACCAATCGTTTATGTGATCTCCTAAATGTATGTTGGGCAGGTGATTGGTTATCTGGAGCCGCTCGTCCTCCAAATGGTGTACGCTCTCTGTTTTATTCACGAGCCACTCCTGGACGTTTGGCGCTTTGTTTAAATATTGTACACCAATTGGAGTGTTTCGATTTCCAACATGTGTTGGATTCCTAACTACTAATATTAGTAGTCTGACTTCTTGAAAAATAATTCGAAAAGACTAAATTGCTTATTCTTTTATGCTTATTTATTTACTACTTTCTTCATAATCCCTAATGTTATCGTCTTTCATTTACAGTCATTATATTTTACAGACTCTGCATATAGTGTCATCCTGTCTTACTCATAAAGGT] [-] EMBL CD074844 [CCAAAAATAATGACATGGATTTTACATCAATGTCTTAAACGTAATCCATCCGAAAGACCTAATGCTGATGAGATTGCAGATATTTTGCATACTTGGTGTCTTATTCGACATTTTCACACTAGACAAGAAGTTGATATTTTTAAAGATTTTTCTCAATATCCAACAAATCTTATGACAGATATTGGTTCTTTGACCGCAGAGTTTAAAAATTCGACAAAATCCCATCAAATACAAAGTAATAAGCTCACCAATCGTTTATGTGATCTCCTAAATGTATGTTGGGCAGGTGATTGGTTATCTGGAGCCGCTCGTCCTCCAAATGGTGTACGCTCTCTGTTTTATTCACGAGCCACTCCTGGACGTTTGGCGCTTTGTTTAAATATTGTACACCAATTGGAGTGTTTCGATTTCCAACATGTGTTGGATTCCTAACTACTAATATTAGTAGTCTGACTTCTTGAAAAATAATTCGAAAAGACTAAATTGCTTATTCTTTTATGCTTATTTATTTACTACTTTCTTCATAATCCCTAATGTTATCGTCTTTCATTTACAGTCATTATATTTTACAGACTCTGCATATAGTGTCATCCTGTCTTACTCATAAAGGT] consensusID : consensus_9059#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 491 fasta sequence [ATTTCGGCACGAGGGCCTTTCTTGTTTTAAAATATTTTCATTCTTTTAATTGACTTTTAAATTGGTTCTTTGACCGCAGAGTTTAAAAATTCGACAAAATCCCATCAAATACAAAGTAATAAGCTCAACAATCGTTTATGTGATCTCCTAAATGTATGTTGGGCAGGTGATTGGTTATCTGGAGCCGCTCGTCCTCCAAATGGTGTACGCTCTCTGTTTTATTCACGAGCCACTCCTGGACGTTTGGCGCTTTGTTTAAATATTGTACACCAATTGGAGTGTTTCGATTTCCAACATGTGTTGGATTCCTAACTACTAATATTAGTAGTCTGACTTCTTGAAAAATAATTCGAAAAGACTAAATTGCTTATTCTTTTATGCTTATTTATTTACTACTTTCTTCATAATCCCTAATGTTATCGTCTTTCATTTACAGTCATTATATTTTACAGACTCTGCATATAGTGTCATCCTGACTTACTCATAAAGGT] [+] EMBL CD081464 [ATTTCGGCACGAGGGCCTTTCTTGTTTTAAAATATTTTCATTCTTTTAATTGACTTTTAAATTGGTTCTTTGACCGCAGAGTTTAAAAATTCGACAAAATCCCATCAAATACAAAGTAATAAGCTCAACAATCGTTTATGTGATCTCCTAAATGTATGTTGGGCAGGTGATTGGTTATCTGGAGCCGCTCGTCCTCCAAATGGTGTACGCTCTCTGTTTTATTCACGAGCCACTCCTGGACGTTTGGCGCTTTGTTTAAATATTGTACACCAATTGGAGTGTTTCGATTTCCAACATGTGTTGGATTCCTAACTACTAATATTAGTAGTCTGACTTCTTGAAAAATAATTCGAAAAGACTAAATTGCTTATTCTTTTATGCTTATTTATTTACTACTTTCTTCATAATCCCTAATGTTATCGTCTTTCATTTACAGTCATTATATTTTACAGACTCTGCATATAGTGTCATCCTGACTTACTCATAAAGG ] [-] EMBL CD074804 [ TTTCTTGTTTTAAAATATTTTCATTCTTTTAATTGACTTTTAGATTGGTTCTTTGACCGCAGAGTTTAAAAATTCGACAAAATCCCATCAAATACAAAGTAATAAGCTCAACAATCGTTTATGTGATCTCCTAAATGTATGTTGGGCAGGTGATTGGTTATCTGGAGCCGCTCGTCCTCCAAATGGTGTACGCTCTCTGTTTTATTCACGAGCCACTCCTGGACGTTTGGCGCTTTGTTTAAATATTGTACACCAATTGGAGTGTTTCGATTTCCAACATGTGTTGGATTCCTAACTACTAATATTAGTAGTCTGACTTCTTGAAAAATAATTCGAAAAGACTAAATTGCTTATTCTTTTATGCTTATTTATTTACTACTTTCTTCATAATCCCTAATGTTATCGTCTTTCATTTACAGTCATTATATTTTACAGACTCTGCATATAGTGTCATCCTGACTTACTCATAAAGGT] [-] EMBL CD075289 [ CTAAATCGCTTATTCTTTTATGCTTATTTATTGACTACTTTCTTCATAATCCCTAATGTTATCGTCTTTCATTTACAGTCATTATATTTTACAGACTCTGCATATAGTGTCATCCTGACTTACTCATAAAGGT] consensusID : consensus_9059#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 454 fasta sequence [GAGGGTTTCTTGTTTTAAAATATTTTCATTCTTTTAATTGACTTTTAGATTGGTTCTTTGACCGCAGAGTTTAAAAATTCGACAAAATCCCATCAAATACAAAGTAATAAGCTTNNNNNNNNNNNNNNNNNNNNNNNAAATGTATGTTGGGCAGGTGATTGGTTATCTGGAGCCGCTCGTCCTCCAAATGGTGTACGCTCTCTGTTTTATTCACGAGCCACTCCTGGACGTTTGGCGCTTTGTTTAAATATTGTACAACATGTGTTGGATTCCTAACTACTAATATTAGTAGTCTGACTTCTTGAAAAATAATTCGAAAAGACTAAATTGCTTATTCTTTTATGCTTATTTATTTACTACTTTCTTCATAATCCCTAATGTNNNNNNNNNNNNNNNNNNNNNNTTATATTTTACAGACTCTGCATATAGTGTCATCCTGACTTACTCATAAAGG] [+] EMBL CD080978 [GAGGGTTTCTTGTTTTAAAATATTTTCATTCTTTTAATTGACTTTTAGATTGGTTCTTTGACCGCAGAGTTTAAAAATTCGACAAAATCCCATCAAATACAAAGTAATAAGCTTNNNNNNNNNNNNNNNNNNNNNNNAAATGTATGTTGGGCAGGTGATTGGTTATCTGGAGCCGCTCGTCCTCCAAATGGTGTACGCTCTCTGTTTTATTCACGAGCCACTCCTGGACGTTTGGCGCTTTGTTTAAATATTGTACAACATGTGTTGGATTCCTAACTACTAATATTAGTAGTCTGACTTCTTGAAAAATAATTCGAAAAGACTAAATTGCTTATTCTTTTATGCTTATTTATTTACTACTTTCTTCATAATCCCTAATGTNNNNNNNNNNNNNNNNNNNNNNTTATATTTTACAGACTCTGCATATAGTGTCATCCTGACTTACTCATAAAGG] consensusID : consensus_9059#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 272 fasta sequence [TCGCGGCCACAAATTCGGCACGAGGGGCATTATTCAGCTCCAGAAATAGCACAAATCATTGATTCACTTAAAGATAATTCAAACAATATTATAACTAATAAAGATTATAAACATTCAGATATATGGGCAATTGCTACATTAATTTATCCTTTATTTGGAATATCTAATCCATTTGTTGATGGAACATTTTCTTCAGTAAACTATACTGAAGATTCTNTGCCTGAACTTCCACATGAAGCACCAAAAATATGACATGGATTTACATCAATGTC] [+] EMBL CD077580 [TCGCGGCCACAAATTCGGCACGAGGGGCATTATTCAGCTCCAGAAATAGCACAAATCATTGATTCACTTAAAGATAATTCAAACAATATTATAACTAATAAAGATTATAAACATTCAGATATATGGGCAATTGCTACATTAATTTATCCTTTATTTGGAATATCTAATCCATTTGTTGATGGAACATTTTCTTCAGTAAACTATACTGAAGATTCTNTGCCTGAACTTCCACATGAAGCACCAAAAATATGACATGGATTTACATCAATGTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9059#2 ------------------------------------------------------------ consensus_9059#3 ------------------------------------------------------------ consensus_9059#1 ------------------------------------------------------------ consensus_9059#0 AATTCACATTTTCATGTTGCATTAACTGATTTCGGTTGTGCTATTCGAACTGGACATCAT 60 consensus_9059#4 ------------------------------------------------------------ consensus_9059#2 ------------------------------------------------------------ consensus_9059#3 ------------------------------------------------------------ consensus_9059#1 ------------------------------------------------------------ consensus_9059#0 CATCATCATCATCGTATTGATGGTAATAATAATGAAGAAGAATATCTGAATCATAGTGGA 120 consensus_9059#4 ------------------------------------------------------------ consensus_9059#2 ------------------------------------------------------------ consensus_9059#3 ------------------------------------------------------------ consensus_9059#1 ------------------------------------------------------------ consensus_9059#0 AATTTGGCATTATTAGCTCCAGAAATAGTACAAATCATTGATTCACTTAAAGATAATTCA 180 consensus_9059#4 ------------------------------------------------------------ consensus_9059#2 ------------------------------------------------------------ consensus_9059#3 ------------------------------------------------------------ consensus_9059#1 ------------------------------------------------------------ consensus_9059#0 AACAATATTATAACTAATAAAGATTATAAACATTCAGATATATGGGCAATTGCTACATTA 240 consensus_9059#4 ------------------------------------------------------------ consensus_9059#2 ------------------------------------------------------------ consensus_9059#3 ------------------------------------------------------------ consensus_9059#1 ------------------------------------------------------------ consensus_9059#0 ATTTATCCTTTATTTGGAATATCTAATCCATTTGTTGATGGAACATTTTCTTCAGTAAAC 300 consensus_9059#4 ------------------------------------------------------------ consensus_9059#2 ------------------------------------------------------------ consensus_9059#3 ------------------------------------------------------------ consensus_9059#1 ---------------------------------------CCAAAAATAATGACATGGATT 21 consensus_9059#0 TATACTGAAGATTCTTTGCCTGAACTTCCACATGAAGCACCAAAAATAATGACATGGATT 360 consensus_9059#4 ------------------------------------------------------------ consensus_9059#2 ------------------------------------------------------------ consensus_9059#3 ------------------------------------------------------------ consensus_9059#1 TTACATCAATGTCTTAAACGTAATCCATCCGAAAGACCTAATGCTGATGAGATTGCAGAT 81 consensus_9059#0 TTACATCAATGTCTTAAACGTAATCCATCCGAAAGAACTAATGCTGATGAGATTGCCGAT 420 consensus_9059#4 ------------------------------------------------------------ consensus_9059#2 ----------------------------ATTTCGGCACGAGG---GCCTTTCTTGTTTTA 29 consensus_9059#3 --------------------------------------GAGG---G--TTTCTTGTTTTA 17 consensus_9059#1 ATTTTGCATACTTGGTGTCTTATTCGACATTTTCACACTAGACAAGAAGTTGATATTTTT 141 consensus_9059#0 ATTTTGCATACTTGGTGTCTTATTCGACATTTTCACACTAGACAAGAAGTTGATATTTTT 480 consensus_9059#4 ------------------------------------------------------------ consensus_9059#2 AAATATTTTCATT--CTTTTAATTGACTTTT------AAATTGGTTCTTTGACCGCAGAG 81 consensus_9059#3 AAATATTTTCATT--CTTTTAATTGACTTTT------AGATTGGTTCTTTGACCGCAGAG 69 consensus_9059#1 AAAGATTTTTCTCAATATCCAACAAATCTTATGACAGATATTGGTTCTTTGACCGCAGAG 201 consensus_9059#0 AAAGATTTTTCTCAATATCCAACAAATCTTATGACAGATATTGGTTCTNNNNNNNNNNNN 540 consensus_9059#4 ------------------------------------------------------------ consensus_9059#2 TTTAAAAATTCGACAAAATCCCATCAAATACAAAGTAATAAGCTCAACAATCGTTTATGT 141 consensus_9059#3 TTTAAAAATTCGACAAAATCCCATCAAATACAAAGTAATAAGCTTNNNNNNNNNNNNNNN 129 consensus_9059#1 TTTAAAAATTCGACAAAATCCCATCAAATACAAAGTAATAAGCTCACCAATCGTTTATGT 261 consensus_9059#0 NNNAAAAATTCGACAAAATCCCATCAAATACAAAGTAATAAGCTCAACAATCGTTTATGT 600 consensus_9059#4 ------------------------------------------------------------ consensus_9059#2 GATCTCCTAAATGTATGTTGGGCAGGTGATTGGTTATCTGGAGCCGCTCGTCCTCCAAAT 201 consensus_9059#3 NNNNNNNNAAATGTATGTTGGGCAGGTGATTGGTTATCTGGAGCCGCTCGTCCTCCAAAT 189 consensus_9059#1 GATCTCCTAAATGTATGTTGGGCAGGTGATTGGTTATCTGGAGCCGCTCGTCCTCCAAAT 321 consensus_9059#0 GATCTCCTAAATGTATGTTGGGCAGGTGATTGGTTATCTGGAGCCGCTCGTCCTCCAAAT 660 consensus_9059#4 -------------------------------------TCGCGGCCACAAATTCGGCACGA 23 * *** * * * ** consensus_9059#2 GGTGTACGCTCTCTGTTTTATTCACGAGCCACTCCTGGACGTTTGGCGCTTTGTTTAAAT 261 consensus_9059#3 GGTGTACGCTCTCTGTTTTATTCACGAGCCACTCCTGGACGTTTGGCGCTTTGTTTAAAT 249 consensus_9059#1 GGTGTACGCTCTCTGTTTTATTCACGAGCCACTCCTGGACGTTTGGCGCTTTGTTTAAAT 381 consensus_9059#0 GGTGTACGCTCTCTGT----------------------------GGCGCTTTGTTTAAAT 692 consensus_9059#4 GGGGCAT-TATTCAGCTCCAGAAATAGCACA---------AATCATTGATTCACTTAAAG 73 ** * * ** * * ** ***** consensus_9059#2 ATTGTACACCAATTGGAGTGTTTCGATTTCCAACATGTGTTGGATTCCTAACTACTAATA 321 consensus_9059#3 ATTGTACA------------------------ACATGTGTTGGATTCCTAACTACTAATA 285 consensus_9059#1 ATTGTACACCAATTGGAGTGTTTCGATTTCCAACATGTGTTGGATTCCTAACTACTAATA 441 consensus_9059#0 ATTGTACACCAATTGGAGTGTTTCGATTTCCAACATGTGTTGGATTCCTAACTACTAATA 752 consensus_9059#4 ATAATTCA-----------------------AACA-ATATT--ATAACTAATAAAGATTA 107 ** * ** *** * ** ** **** * * ** consensus_9059#2 TTAGTAGTCTGACTTCTTGAAAAATAATTCGAAAAGACTAAATTGCTTATTCTTTTATGC 381 consensus_9059#3 TTAGTAGTCTGACTTCTTGAAAAATAATTCGAAAAGACTAAATTGCTTATTCTTTTATGC 345 consensus_9059#1 TTAGTAGTCTGACTTCTTGAAAAATAATTCGAAAAGACTAAATTGCTTATTCTTTTATGC 501 consensus_9059#0 TTAGTAGTCTGACTTCTTGAAAAATAATTCGAAAAGACTAAATTGCTTATTCTTTTATGC 812 consensus_9059#4 TAAACATTCAGATATATGGGCAATTGCTACATTAA---TTTATCCTTTATTTGGAATATC 164 * * * ** ** * * * ** * * * ** * ** ***** * consensus_9059#2 TTATTTATTTACTACTTTCTTCATAATCCCTAATGTTATCGTCTTTC-ATTTACAGTCAT 440 consensus_9059#3 TTATTTATTTACTACTTTCTTCATAATCCCTAATGTNNNNNNNNNNN-NNNNNNNNNNNT 404 consensus_9059#1 TTATTTATTTACTACTTTCTTCATAATCCCTAATGTTATCGTCTTTC-ATTTACAGTCAT 560 consensus_9059#0 TTATTTATTTACTACTTTCTTCATAATNNNNNNNNNNNNNNNNNNNNCATTTACAGTCAT 872 consensus_9059#4 TAATCCATTTGTTGATGGAA-CATTTTCTTCAGTA-AACTATACTGAAGATTCTNTGCCT 222 * ** **** * * *** * * consensus_9059#2 TATATTTTACAGACTCTGCATATAGTGTCATCCTGACTT-ACTCATAAAGGT- 491 consensus_9059#3 TATATTTTACAGACTCTGCATATAGTGTCATCCTGACTT-ACTCATAAAGG-- 454 consensus_9059#1 TATATTTTACAGACTCTGCATATAGTGTCATCCTGTCTT-ACTCATAAAGGT- 611 consensus_9059#0 TATATTTTACAGACTCTGCATATAGTGTCATCCTGTCTTTACTCATAAGG--- 922 consensus_9059#4 GAACTTCCACATGAAGCACCAAAAATATGACATGGATTT---ACATCAATGTC 272 * ** *** * * * * * * * ** *** * |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||