These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9066#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 433 fasta sequence [TTCAACGGAATCGGAAGGGTCTTGATCAGAACCGAAGCCACCAATAACAACTAAGTACTCATTGCCACCGTCACGCTGACGAAATCTTCGATCACGCATTTCATGGCGTAAATCTGGACGTAAATGAAACCGTTTAGCATCATCTACCAAATCCCGACACTCGAGAGATTGTCGAATAAGACGATCTTTATCCACAACATCTGTGAGGAATCGAACTGACATAACTGAAAGACGAATGTTCCGAAGCAAAGAAGGAAGATTCGCGACCCTTTCAATGGGTTGATGATACACCCAGCGCATAACAGCGTTATATACAGATTCTTCATTGTCAATATGTAAATCTTCTCTTGTAATAAGATCAAGCAATTCCTCAGGTGTGAGGCATACGAATTCCTCAGATTCAACAACTGACTCAAAATTACAAGCTGCAAAG] [+] EMBL CD186293 [TTCAACGGAATCGGAAGGGTCTTGATCAGAACCGAAGCCACCAATAACAACTAAGTACTCATTGCCACCGTCACGCTGACGAAATCTTCGATCACGCATTTCATGGCGTAAATCTGGACGTAAATGAAACCGTTTAGCATCATCTACCAAATCCCGACACTCGAGAGATTGTCGAATAAGACGATCTTTATCCACAACATCTGTGAGGAATCGAACTGACATAACTGAAAGACGAATGTTCCGAAGCAAAGAAGGAAGATTCGCGACCCTTTCAATGGGTTGATGATACACCCAGCGCATAACAGCGTTATATACAGATTCTTCATTGTCAATATGTAAATCTTCTCTTGTAATAAGATCAAGCAATTCCTCAGGTGTGAGGCATACGAATTCCTCAGATTCAACAACTGACTCAAAATTACAAGCTGCAAAG] consensusID : consensus_9066#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 391 fasta sequence [CACCGAGTAGTGAATTACTGGAATTCTCTACCAGAACACGTAATATCAGCACCTTCTGTTGATATATTCAAGACGAGATTGGACCTCCACAGTGTAACAAACTGCAAGGATTAAAATAGGTCACTAGACCTATCCTTATTACTGAAGACTGAAGACTATATATCCAACCACCGACGTGCAATGCTTTATGGTGTAGGAGTAGGTTGGAAGAAAGCTAGGGGCGGCCAGACCAAAACGTGGCACAAATCCATGAAGTCGCTGACAAGTGAACTGAGTCATGTTGGTAGGTGTAGACTACCTGGTTGGGATCCGCGAGATGATAACAATCGATGGTTAGAGACCTTGAATGACACGGCTCAAAATAGTTTGCAATGGCGAACCTCCTCCTCCT] [+] EMBL CD183032 [CACCGAGTAGTGAATTACTGGAATTCTCTACCAGAACACGTAATATCAGCACCTTCTGTTGATATATTCAAGACGAGATTGGACCTCCACAGTGTAACAAACTGCAAGGATTAAAATAGGTCACTAGACCTATCCTTATTACTGAAGACTGAAGACTATATATCCAACCACCGACGTGCAATGCTTTATGGTGTAGGAGTAGGTTGGAAGAAAGCTAGGGGCGGCCAGACCAAAACGTGGCACANATCCATGAAGTCGCTGACAAGTGAACTGAGTCATGTTGGTAGGTGTAGACTACCTG ] [+] EMBL CD183069 [CACCGAGTAGTGAATTACTGGAATTCTCTACCAGAACACGTAATATCAGCACCTTCTGTTGATATATTCAAGACGAGATTGGACCTCCACAGTGTAACAAACTGCGAGGATTAAAATAGGTCACTAGACCTATCCTTATTACTGAAGACTGAAGACTATATATCCAACCACCGACGTGCAACGCTTTATGGTGTAGGAGTAGGTTGGAAGAAAGCTAGGGGCGGCCAGACCAAAACGTGGCACAAATCCATGAAGTCGCTGACAAGTGAACTGAGTCATGTT ] [+] EMBL CD182950 [CACCGAGTAGTGAATTACTGGAATTCTCTACCAGAACACGTAATATCAGCACCTTCTGTTGATATATTCAAGACGAGATTGGACCTCCACAGTGTAACAAACTGCAAGGATTAAAATAGGTCACTAGACCTATCCTTATTACTGAAGACTGAAGACTATATATCCAACCACCGACGTGCAATGCTTTATGGTGTAGGAGTAGGTTGGAAGAAAGCTAGGGGCGGCCAGACCANAACGTGGCACANATCCATGAAGTCGCTGACAAGTGAACTG ] [+] EMBL CD183020 [CACCGAGTAGTGAATTACTGGAATTCTCTACCAGAACACGTAATATCAGCACCTTCTGTTGATATATTCAAGACGAGATTGGACCTCCACAGTGTAACAAACTGCAAGGATTAAAATAGGTCACTAGACCTATCCTTATTACTGAAGACTGAAGACTATATATCCAACCACCGACGTGCAATGCTTTATGGTGTAGGAGTAGGTTGGAAGAAAGCTAGGGGCGGCTAGACCAAAACGTGGCACAAATCCATGA ] [+] EMBL CD183030 [CACCGAGTAGTGAATTACTGGAATTCTCTACCAGAACACGTAATATCAGCACCTTCTGTTGATATATTCAAGACGAGATTGGACCTCCACAGTGTAACAAACTGCAAGGATTAAAATAGGTCACTCGACCTATCCTTATTACTGAAGACTGAAGACTATATATCCAACCACCGACGTGCAATGCTTTATGGTGTAGGAGTAGGTTGGAAGAAAGCTAGGGGCGGCCAGACCAA ] [-] EMBL CD178968 [ CAGCACCTTCTGTTGATATATTCAAGACGAGATTGGACCTCCACAGTGTAACAAACTGCAAGGATTAAAATAGGTCACTAGACCTATCCTTATTACTGAAGACTGAAGACTATATATCCAACCACCGACGTGCAATGCTTTATGGTGTAGGAGTAGGTTGGAAGAAAGCTAGGGGCGGCCAGACCAAAACGTGGCACAAATCCATGAAGTCGCCGACAAGTGAACTGAGTCATGTTGGTAGGTGTAGACTACCTGGTTGGGATCCGCGAGATGATAACAATCGATGGTTAGAGACCTTGAATGACACGGCTCAAAATAGTTTGCAATGGCGAACCTCCTCCTCCT] consensusID : consensus_9066#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 326 fasta sequence [GGTAGTAAGAGTATAAACCGTAATCCGAAAGATAGGGTTTGAAGATGTCATTCAAGGAGTATAATAAATAAATTTGAAATAAATTTGGAAAGAGAAAAAGGAGAGGGACATGAGGAATTCAGAAGATTAGAAGTTGGTAGAACACAAAGAGTGGATGAACCTTCGCCATTGCAAACGATTTTGAGCCATGTCATTCAAGGTCTCTAACCATCGGTTGCTGTTATCTCGTGGATCCCAACCAGGTAGTCTACACCTACCAATATGGCTCAGTCCACTTGTCAGTGACTTCATGGATTTGTGCCACGTTTTGGTCTGGCGGCCCCTAG] [+] EMBL CD128181 [GGTAGTAAGAGTATAAACCGTAATCCGAAAGATAGGGTTTGAAGATGTCATTCAAGGAGTATAATAAATAAATTTGAAATAAATTTGGAAAGAGAAAAAGGAGAGGGACATGAGGAATTCAGAAGATTAGAAGTTGGTAGAACACAAAGAGTGGATGAACCTTCGCCATTGCAAACGATTTTGAGCCATGTCATTCAAGGTCTCTAACCATCGGTTGCTGTTATCTCGTGGATCCCAACCAGGTAGTCTACACCTACCAATATGGCTCAGTCCACTTGTCAGTGACTTCATGGATTTGTGCCACGTTTTGGTCTGGCGGCCCCTAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9066#0 TTCAACGGAATCGGAAGGGTCTTGA--TCAGAACCGAAGCCACCAATAACAACTAAGTAC 58 consensus_9066#2 --------------------------------------------GGTAGTAA--GAGTAT 14 consensus_9066#1 ---CACCGAGTAGTGAATTACTGGAATTCTCTACCAGAACACGTAATATCAGC--ACCTT 55 ** * * consensus_9066#0 TCATTGCCACCGTCACGCTGACGA-AATCTTCGATCACGCATTTCATGGCGTAAATCTGG 117 consensus_9066#2 AAACCGTAATCCGAAAGATAGGG------TTTGAAGATGTCATTCAAGGAGTATAA-TAA 67 consensus_9066#1 CTGTTGATATATTCAAGACGAGATTGGACCTCCACAGTGTAACAAACTGCAAGGATTAAA 115 * * * * * * * * * * consensus_9066#0 ACGTAA-ATGAAACCGTTTAGCATCATCTACCAAATCCCGACACTCGAGAGATTGTCGAA 176 consensus_9066#2 ATAAAT-TTGAAATAAATTTGGAA-AGAGAAAAAGGAGAGGGACATGAGGAAT--TCAGA 123 consensus_9066#1 ATAGGTCACTAGACCTATCCTTATTACTGAAGACTGAAGACTATATATCCAACCACCGAC 175 * * * * * * * * * * * consensus_9066#0 TAAGACGATCTTTATCCACAACATCTGTGAGGAATCGAACTGACATAACTGAAAGACGAA 236 consensus_9066#2 AGATTAGAAGTTGGT--AGAACA-CAAAGAGTGGATGAACCTTCGCCATTGCAA-ACGA- 178 consensus_9066#1 GTGCAATGCTTTATGGTGTAGGAGTAGGTTGGAAGAAAGCTA--GGGGCGGCCAGACCAA 233 ** * * * * * * * ** * consensus_9066#0 TGTTCCGAAGCAAAGAAGGAAGATTCGCGACCCTTTCAATGGGTTGATGATACACCCAGC 296 consensus_9066#2 --TTTTGAGCCATGTCATTCAAGGTCTCTAACC-----ATCGGTTGCTGTTA--TCTCGT 229 consensus_9066#1 AACGTGGCACAAATCCATGAAG--TCGCTGACAAGTGAACTGAGTCATGTTG--GTAGGT 289 * * * * ** * * * * * ** * * consensus_9066#0 GCATAACAGCGTTATATACAGATTCTTCATTGTCAATATGTAAATCTTCTCTTGT-AATA 355 consensus_9066#2 GGATCCCAAC----CAGGTAGTCTACAC-CTACCAATATGGCTCAGTCCACTTGTCAGTG 284 consensus_9066#1 GTAGACTACC----TGGTTGGGATCCGC------GAGATGATAACAATCGATGGTTAGAG 339 * * * * * * * * *** * * ** * consensus_9066#0 AGATCAAGCAATTCC-TC----AGGTGTGAGGCATACGAATTCCTCAGATTCAACAACTG 410 consensus_9066#2 ACTTCATGGATTTGTGCC----ACGTTTTGGTCTGGCGG--CCCCTAG------------ 326 consensus_9066#1 ACCTTGAATGACACGGCTCAAAATAGTTTGCAATGGCGAACCTCCTCCTCCT-------- 391 * * * * ** * consensus_9066#0 ACTCAAAATTACAAGCTGCAAAG 433 consensus_9066#2 ----------------------- consensus_9066#1 ----------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||