cluster # 9069

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Schistosoma mansoni
cluster # 9069 cluster # 9069 Sequences # 8 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9069#0 length = 620 sequences # 5

consensus_9069#1 length = 390 sequences # 3

consensusID : consensus_9069#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 620
fasta sequence

                              [AAAATACTACCAGCATAGATAAGTAAACAAGCTGACCAAGCCATAGGTATCATACCACCAGGTGAATATATTGTATTTTCACGAACAATCGTTGTCCATGCAGATCTGGCTGATTTTAGCTCAGTATCTAGTCGATAATTTTCTTGCGACATATTTTCGTAATATATCAGAAGACTGATGAAATAAATTAAACCTGTAAACCATAATGCTGCGCCTCCACCCAAAGCTGCATATTGAGCTGTTCGATATCTGATTTTCTCTGGTGTCATACATGCTG-TGAGAAGAATTGTACATG--TTATAATGAT--GTTGATGAAAACCAAGATGATCGCAGCGATTTGCAGTATGTTTATAGTATGTCTCATTAAAAATATTGGTAGAACTTTATCATTGTAGCTGCTAAATTCTTCACAATTTTCCAGAGGATAACATTGACCATTGTATGATGTACTTACTATTTCGTTAGTAATACATTGTTTCCATAATCCACGAGAACGACTTAATTGATTATAATCATCAATAAGGCCAACATATGTAACATCGTAAACAGCCCAATCTGGTGATATTTGCGCTGCGATTGCCAAACCCAAAAATACTAATTCACATATATATGAAGCTGTATT]

[+] EMBL CD094631             [AAAATACTACCAGCATAGATAAGTAAACAAGCTGACCAAGCCATAGGTATCATACCACCAGGTGAATATATTGTATTTTCACGAACAATCGTTGTCCATGCAGATCTGGCTGATTTTAGCTCAGTATCTAGTCGATAATTTTCTTGCGACATATTTTCGTAATATATCAGAAGACTGATGAAATAAATTAAACCTGTAAACCATAATGCTGCGCCTCCACCCAAAGCTGCATATTGAGCTGTTCGATATCTGATTTTCTCTGGTGTCATACATGCTG TGAGAAGAATTGTACATG  TTATAATGAT  GTTGATGAAAACCAAGATGATCGCAGCGATTTGCAGTATGTTTATAGTATGTCTCATTAAAAATATTGGTAGAACTTTATCATTGTAGCTGCTAAATTCTTCACAATTTTCCAGAGGATAACATTGACCATTGTATGATGTACTTACTATTTCGTTAGTAATACA                                                                                                                                                      ]
[+] EMBL CD094668             [AAAATACTACCAGCATAGATAAGTAAACAAGCTGACCAAGCCATAGGTATCATACCACCAGGTGAATATATTGTATTTTCACGAACAATCGTTGTCCATGCAGATCTGGCTGATTTTAGCTCAGTATCTAGTCGATAATTTTCTTGCGACATATTTTCGTAATATATCAGAAGACTGATGAAATAAATTAAACCTGTAAACCATAATGCTGCGCCTCCACCCAAAGCTGCATATTGAGCTGTTCGATATCTGATTTTCTCTGGTGTCATACATGCTGNTGAGAAGAATTGTACATGNNTTATAATGATNNGTTGATGAAAA                                                                                                                                                                                                                                                                                                                ]
[+] EMBL CD125698             [                                                                                                                                                                                                                                                                                                                                                                                                    ATCATTGTAGCTGCTAAATTCTTCACAATTTTCCAGAGGATAACATTGACCATTGTATGATGTACTTACTATTTCGTTAGTAATACATTGTTTCCATAATCCACGAGAACGACTTATTTGATTATAATCA                                                                                                           ]
[+] EMBL CD150252             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                      TACTATTTCGTTAGTAATACATTGTTTCCATAATCCACGAGAACGACTTAATTGATTATAATCATCAATAAGGCCAACATATGTAACATCGTAAACAGCCCAATCTGGTGATATTTGCGCTGCGATTGCCAAACCCAAAAATACTAATTCACATATATATGAAGCTGTATT]
[+] EMBL CD150326             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                      TACTATTTCGTTAGTAATACATTGTTTCCATAATCCACGAGAACGACTTAATTGATTATAATCATCAATAAGGCCAACATATGTAACATCGTAAACAGCCCAATCTGGCGATATCTGCGCTGCGATTGCCAAACCCAAAAATACTAATTCACATATATATGAAGCTGTATT]




>consensus_9069#0
AAAATACTACCAGCATAGATAAGTAAACAAGCTGACCAAGCCATAGGTATCATACCACCA
GGTGAATATATTGTATTTTCACGAACAATCGTTGTCCATGCAGATCTGGCTGATTTTAGC
TCAGTATCTAGTCGATAATTTTCTTGCGACATATTTTCGTAATATATCAGAAGACTGATG
AAATAAATTAAACCTGTAAACCATAATGCTGCGCCTCCACCCAAAGCTGCATATTGAGCT
GTTCGATATCTGATTTTCTCTGGTGTCATACATGCTGTGAGAAGAATTGTACATGTTATA
ATGATGTTGATGAAAACCAAGATGATCGCAGCGATTTGCAGTATGTTTATAGTATGTCTC
ATTAAAAATATTGGTAGAACTTTATCATTGTAGCTGCTAAATTCTTCACAATTTTCCAGA
GGATAACATTGACCATTGTATGATGTACTTACTATTTCGTTAGTAATACATTGTTTCCAT
AATCCACGAGAACGACTTAATTGATTATAATCATCAATAAGGCCAACATATGTAACATCG
TAAACAGCCCAATCTGGTGATATTTGCGCTGCGATTGCCAAACCCAAAAATACTAATTCA
CATATATATGAAGCTGTATT

consensusID : consensus_9069#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 390
fasta sequence

                              [TTTCAGTGATATTGTTATCTGAAGTTTCTATCCTAGAATGTGCACAATCCTTTATCAATTCCTTCATTTTCTAGTATTTACATTGAAGGTCACTCATTCATCTTTCATTTTGTTTCAATCTATAAGATCTATGATCACAGAAACAAACAAATCATCGTGGTATCAATCAAGATAGTAACCATAAGAATTTCTTTACAATAGATTACAATTGATAATAAACTATTTCGTTAGTAATACATTGTTTCCATAATCCACGAGAACGACTTAATTGATTATAATCATCAATAAGGCCAATATATGTAACATCGTAAACAGCCCAATCTGGTGATATTTGCGCTGCGATTGCCAAACCCAAAAATACTAATTCACATATATATGAAGCTGTATTTA]

[-] EMBL CD111382             [TTTCAGTGATATTGTTATCTGAAGTTTCTATCCTAGAATGTGCACAATCCTTGATCAATTCCTTCATTTTCTAGTATTTACATTGAAGGTCACTCATTCATCTTCCATTTTGTTTCAATCTATAAGATCTATGATCACAGAAACAAACAAATCATCGTGGTATCAATCAAGATAGTAACCATAAGAATTTCTTTACAATAGATTACAATTGATAATAAACTATTTCGTTAGTAATACATTGTTTCCATAATCCACGAGAACGACTTAATTGATTATAATCATCAATAAGGCCAATATATGTAACATCGTAAACAGCCCAATCTGGTGATATTTGCGCTGCGATTGCCAAACCCAAAAATACTAATTCACATATATATGAAGCTGTATTTA]
[+] EMBL CD111226             [TTTCAGTGATATTGTTATCTGAAGTTTCTATCCTAGAATGTGCACAATCCTTTATCAATTCCTTCATTTTCTAGTATTTACATTGAAGGTCACTCATTCATCTTTCATTTTGTTTCGATCTATAAGATCTATGATCACAGAAACAAACAAATCATCGTGGTATCAATCAAGATAGTAACCATAAGAATTTCTTTACAATAGATTACAATTGATAATAAACTATTTCGTTAGTAATACATTGTTTCCATAATCCACGAGAACGACTTAATTGATTATAATCATCAATAAGGCCAATATATGTAACATCGTAAACAGCCCAATCTGGTGATATTTGCGCTGCGATTGCCAAACCCAAAAATACTAATTCACATATATATGAAGCTGTATTT ]
[+] EMBL CD111238             [TTTCAGTGATATTGTTATCTGAAGTTTCTATCCTAGAATGTGCACAATCCTTTATCAATTCCTTCATTTTCTAGTATTTACATTGAAGGTCACTCATTCATCTTTCATTTTGTTTCAATCTATAAGATCTATGATCACAGAAACAAACAAATCATCGTGGTATCAATCAAGATAGTAACCATAAGAATTTCTTTACAATAGATTACAATTGATAATAAACTATTTCGTTAGTAATACATTGTTTCCATAATCCACGAGAACGACTTAATTGATTATAATCATCAATAAGGCCAATATATGTAACATCGTAAACAGCCCAATCTGGTGATATTTGCGCTGCGATTGGCAAACCCAAAAATACTAATTCACATATATATGAAGCTGTATTT ]




>consensus_9069#1
TTTCAGTGATATTGTTATCTGAAGTTTCTATCCTAGAATGTGCACAATCCTTTATCAATT
CCTTCATTTTCTAGTATTTACATTGAAGGTCACTCATTCATCTTTCATTTTGTTTCAATC
TATAAGATCTATGATCACAGAAACAAACAAATCATCGTGGTATCAATCAAGATAGTAACC
ATAAGAATTTCTTTACAATAGATTACAATTGATAATAAACTATTTCGTTAGTAATACATT
GTTTCCATAATCCACGAGAACGACTTAATTGATTATAATCATCAATAAGGCCAATATATG
TAACATCGTAAACAGCCCAATCTGGTGATATTTGCGCTGCGATTGCCAAACCCAAAAATA
CTAATTCACATATATATGAAGCTGTATTTA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9069#0      AAAATACTACCAGCATAGATAAGTAAACAAGCTGACCAAGCCATAGGTATCATACCACCA 60
consensus_9069#1      ------------------------------------------------------------
                                                                                  

consensus_9069#0      GGTGAATATATTGTATTTTCACGAACAATCGTTGTCCATGCAGATCTGGCTGATTTTAGC 120
consensus_9069#1      ------------------------------------------------------------
                                                                                  

consensus_9069#0      TCAGTATCTAGTCGATAATTTTCTTGCGACATATTTTCGTAATATATCAGAAGACTGATG 180
consensus_9069#1      ------------------------------------------------------------
                                                                                  

consensus_9069#0      AAATAAATTAAACCTGTAAACCATAATGCTGCGCCTCCACCCAAAGCTGCATATTGAGCT 240
consensus_9069#1      ----------------------------------------------------TTTCAGTG 8
                                                                           ** **  

consensus_9069#0      GT-TCGATATCTGA---TTTTCTCTGGTGTCATACATGCTGTGAGAAGAATTG-TACATG 295
consensus_9069#1      ATATTGTTATCTGAAGTTTCTATCCTAGAATGTGCACAATCCTTTATCAATTCCTTCATT 68
                       * * * *******   ** * **        * **   *     *  ****  * *** 

consensus_9069#0      TTATAATGATGTTGATGAAAACCAAGATGATCGCAGCGATTTGCAGTATGTTTATAGTAT 355
consensus_9069#1      TTCTAGTATTTACATTGAAGGTCACTCATTCATCTTTCATTTTGTTTCAATCTATAAGAT 128
                      ** ** *  *     ****   **         *    ****    *   * ****  **

consensus_9069#0      GTCTCATTAAAAATATTGGTAGAACTTTATCATTGTAGCTGCTAAATTCTTCACAATTTT 415
consensus_9069#1      CTATGATCACAGAAACAAACAAA---TCATCGTGGTATCAATCAAGATAGTAACCATAAG 185
                       * * ** * * * *     * *   * *** * *** *    **  *  * ** **   

consensus_9069#0      CCAGAGGATAACATTGACCATTGTATGATGTACTTACTATTTCGTTAGTAATACATTGTT 475
consensus_9069#1      AATTTCTTTACAATAGATTACAAT-TGATA-ATAAACTATTTCGTTAGTAATACATTGTT 243
                              **  ** **  *   * ****  *   *************************

consensus_9069#0      TCCATAATCCACGAGAACGACTTAATTGATTATAATCATCAATAAGGCCAACATATGTAA 535
consensus_9069#1      TCCATAATCCACGAGAACGACTTAATTGATTATAATCATCAATAAGGCCAATATATGTAA 303
                      *************************************************** ********

consensus_9069#0      CATCGTAAACAGCCCAATCTGGTGATATTTGCGCTGCGATTGCCAAACCCAAAAATACTA 595
consensus_9069#1      CATCGTAAACAGCCCAATCTGGTGATATTTGCGCTGCGATTGCCAAACCCAAAAATACTA 363
                      ************************************************************

consensus_9069#0      ATTCACATATATATGAAGCTGTATT-- 620
consensus_9069#1      ATTCACATATATATGAAGCTGTATTTA 390
                      *************************