These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9073#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1017 fasta sequence [NACTTCGGCACGAGGTCGACCTTAAGTGCTCTCAACCTCCAACATTGTCGATACGCCTGGAGCTTTGCCTATGTATGTTATTAGTCTTCGTCCGCAGTTTGAATGAACAGTCTTGTTGGACACACGATCTAGCAAAGCTAGTCCGATTTCCTCTAAAACCAACTATTCATCCCAATAAAATTTGTCATGCCAAAAATCGAGTATATTGGTCGTCCATCTTTACACTTCTACGGCAAGCTCCTGTCAGAAATTGCCAAAAACCTTAAAAATCGCGCCAAGGGTAGAGTGGTAATAAAGGAAACTGAGACAGCAAAATTCAAGGAGCCATGCTATTACATCTTAAAAAGTGTTGTTCCACTTATGTCCGATAAGACTGATGTTAGATGTAGAGCATGGGGTATACGAGTATTCCGTGGTCGAAATCTTGGCTATTGTCTCCTACCGAATACACATGAACCAGATTGGCGTCTTTTGTCACCTAGTGAAGCTGAACGTCTAA-CGTCCATGTCAACAA-AAACCGATATGGCCGCTCCAGATGTTCCAGTTAGCTGCGTCGCTCAAGCTCCTCCTTTATTGACAATATTTCTACGAAGAAAAAATGTACTTCCACCACCAGTAGTGGAAGAAGCTGAAAAATCTACTCACTCTTTAGATATACAACAATCAATGAGAGAAGCTAGTGGTTTATTATTGTTAACACCTCACCGTTATGATCCAACAAGTTTTAAAGTCCCTATTGAACCGACTTCCGAGGAGAAATCACGTATGTACCCTCCGTATGAATGGTCAGCTAAAAAAGGACTAATTATAAAGCCAAATTTAGATCGAGATTCTTATTTAATTCGTCGATCTGATACACCTGGCTTGTATTGGCGTGTTCATTTAGCGAAATCTTCAAAAACAGAACAAGATAGTGAAACAGTTTCATAAACAGGAAGTTGTTATCAGAAGAAAGGGATTAGCCATATTCTTGATTGTTGATAATACAGTACTTATGTTTGTAAAAAAAAAAAAAAA] [+] EMBL CD080761 [NACTTCGGCACGAGGTCGACCTTAAGTGCTCTCAACCTCCAACATTGTCGATACGCCTGGAGCTTTGCCTATGTATGTTATTAGTCTTCGTCCGCAGTTTGAATGAACAGTCTTGTTGGACACACGATCTAGCAAAGCTAGTCCGATTTCCTCTAAAACCAACTATTCATCCCAATAAAATTTGTCATGCCAAAAATCGAGTATATTGGTCGTCCATCTTTACACTTCTACGGCAAGCTCCTGTCAGAAATTGCCAAAAACCTTAAAAATCGCGCCAAGGGTAGAGTGGTAATAAAGGAAACTGAGACAGCAAAATTCAAGGAGCCATGCTATTACATCTTAAAAAGTGTTGTTCCACTTATGTCCGATAAGACTGATGTTAGATGTAGAGCATGGGGTATACGAGTATTCCGTGGTCGAAATCTTGGCTATTGTCTCCTACCGAATACACATGAACCAGATTGGCGTCTTTTGTCACCTAGTGAAGCTGAACGTCTAA CGTCCATGTCAACAA AAACCGATATGGCCGCTCCAGATGTTCCAGTTAGCTGCGTCGCTCAAGCTCCTCCTTTATTGACAATATTTCTACGAAGAAAAAATGTACTTCCACCACCAGTAGTGGAAGAAGCTGAANAATCTACTCACTCTNTAGATATANCACAATCAATGAGAGAAGCTAG ] [+] EMBL CD182377 [ AATAAAGGAAACTGAGACAGCAAAATTCAAGGAGCCATGCTATTACATCTTAAAAAGTGTTGTTCCACTTATGTCCGATAAGACTGATGTTAGATGTAGAGCATGGGGTATACGAGTATTCCGTGGTCGAAATCTTGGCTATTGTCTCCTACCGAATACACATGAACCAGATTGGCGTCTTTTGTCACCTAGTGAAGCTGAACGTCTAA CGTCCATGTCAACAA AAACCGATATGGCCGCTCCAGATGTTCCAGTTAGCTGC ] [+] EMBL CD182635 [ AATAAAGGAAACTGAGACAGCAAAATTCAGGGAGCCATGCTATTACATCTTAAAAAGTGTTGTTCCACTTATGTCCGATAAGACTGATGTTAGATGTAGAGCATGGGGTATACGAGTATTCCGTGGTCGAAATCTTGGCTATTGTCTCCTACCGAATACACATGACCCAGATTGGCGTCTTTTGTCACCTAGTGAAGCTGAACGTCTAAGCGT CATGTCAACAA AAACCGATATGGCCGCTCCAGATGTT CAGTTAGCTGC ] [-] EMBL CD182418 [ ATAAAGGAAACTGAGACAGCAAAATTCAAGGAGCCATGCTATTACATCTTAAAAAGTGTTGTTCCACTTATGTCCGATAAGACTGATGTTAGATGTAGAGCATGGGGTATACGAGTATTCCGTGGTCGAAATCTTGGCTATTGTCTCCTACCGAATACACATGAACCAGATTGGCGTCTTTTGTCACCTAGTGAAGCTGAACGTCTAA CGTCCATGTCAACAA AAACCGATATGGCCGCTCCAGATGTTCCAGTTAGCTGCG ] [-] EMBL CD161883 [ TCAAGGAGCCATGCTATTACATCTTAAAAAGTGTTGTTCCACTTATGTCCGATAAGACTGATGTTAGATGTAGAGCATGGGGTATACGAGTATTCCGTGGTCGAAATCTTGGCTATTGTCTCCTACCGAATACACATGAACCAGATTGGCGTCTTTTGTCACCTAGTGAAGCTGAACGTCTAA CGTCCATGTCAACAAGGGGCCGATATGGCCGCTCCAGATGTTCCAGTTAGCTGCGTCGCTCAAGCTCCTCCTTTATTGACAATATTTCTACGAAGAAAAAATGTACTTCCACCACCAGTAGTGGAAGAAGCTGAAAAATCTACTCACTCTTTAGATATACAACAATCAATGAGAGAAGCTAGTGGTTTATTATTGTT ] [-] EMBL CD074685 [ AAATCTTGGCTATTGTCTCCTACCGAATACACATGAACCAGATTGGCGTCTTTTGTCACCTAGTGAAGCTGAACGTCTAA CGTCCATGTCAACAA AAACCGATATGGCCGCTCCAGATGTTCCAGTTAGCTGCGTCGCTCAAGCTCCTCCTTTATTGACAATATTTCTACGAAGAAAAAATGTACTTCCACCACCAGTAGTGGAAGAAGCTGAAAAATCTACTCACTCTTTAGATATACAACAATCAATGAGAGAAGCTAGTGGTTTATTATTGTTAACACCTCACCGTTATGATCCAACAAGTTTTAAAGTCCCTATTGAACCGACTTCCGAGGAGAAATCACGTATGTACCCTCCGTATGAATGGTCAGCTAAAAAAGGACTAATTATAAAGCCAAATTTAGATCGAGATTCTTATTTAATTCGTCGATCTGATACACCTGGCTTGTATTGGCGTGTTCATTTAGCGAAATCTTCAAAAACAGAACAAGATAGTGAAACAGTTTCATAAACAGGAAGTTGTTATCAGAAGAAAGGGATTAGCCATATTCTTGATTGTTGATAATACAGTACT ] [-] EMBL AI395546 [ AAGTTGAAAAATCTACTCACTCTTTAGATATACACCAATCAATGAGAGAAGCTAGTGGTTTATTATTGTTAACACCTCACCGTTATGATCCAACAAGTTTTAAAGTCCCTATTGAACCGACTTCCGAGGAGAAATCACGTATGTACCCTCCGTATGAATGGTCAGCTAAAAAAGGACTAATTATAAAGCCAAATTTAGATCGAGATTCTTATTTAATTCGTCGATCTGATACACCTGGCTTGTATTGGCGTGTTCATTTAGCGAAATCTTCAAAAACAGAACAAGATAGTGAAACAGTTTCATAAACAGGAAGTTGTTATCAGAAGAAAGGGATTAGCCATATTCTTGATTGTTGATAATACAGTACTTATGTTTGTAAAAAAAAAAAAAAA] consensusID : consensus_9073#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 462 fasta sequence [TTATTATTGTTAACACCTCACCGTTATGATCCAACAAGTTTTAAAGTCCCTATTGAACCGACTTCCGAGGAGAAATCACGACCAATTATAAAGCCAAATTTAGATCGAGATTCTTATTTAATTCGTCGATCTGATACACCTGGCTTGTATTGGCGTGTTCATTTAGCGAAATCTTCAAAAACAGAACAAGATAGTGAAACAGTTTCATAAACAGGAAGTTGTTATCAGAAGAAAGGGATTAGCCATATTCTTGATTGTTGATAATACAGTACTTATTTTCAAGTTGGTAGTCTAGTTTCAAAACCACTACCTAATATACTTCGAATATAACTTACTCCTTGTACATATTTCCATTAGTTTGAGGAAATTTTCGTTCTGGTAAGTTATCTTTCTTTGTAATAGTAAATGTTTCTGATTCCTTTTTACTAAAACTACTATTTTTCTTCAAACGATTCAATTCAA] [+] EMBL CD196678 [TTATTATTGTTAACACCTCACCGTTATGATCCAACAAGTTTTAAAGTCCCTATTGAACCGACTTCCGAGGAGAAATCACGACCAATTATAAAGCCAAATTTAGATCGAGATTCTTATTTAATTCGTCGATCTGATACACCTGGCTTGTATTGGCGTGTTCATTTAGCGAAATCTTCAAAAACAGAACAAGATAGTGAAACAGTTTCATAAACAGGAAGTTGTTATCAGAAGAAAGGGATTAGCCATATTCTTGATTGTTGATAATACAGTACTTATTTTCAAGTTGGTAGTCTAGTTTCAAAACCACTACCTAATATACTTCGAATATAACTTACTCCTTGTACATATTTCCATTAGTTTGAGGAAATTTTCGTTCTGGTAAGTTATCTTTCTTTGTAATAGTAAATGTTTCTGATTCCTTTTTACTAAAACTACTATTTTTCTTCAAACGATTCAATTCAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9073#0 NACTTCGGCACGAGGTCGACCTTAAGTGCTCTCAACCTCCAACATTGTCGATACGCCTGG 60 consensus_9073#1 ------------------------------------------------------------ consensus_9073#0 AGCTTTGCCTATGTATGTTATTAGTCTTCGTCCGCAGTTTGAATGAACAGTCTTGTTGGA 120 consensus_9073#1 ------------------------------------------------------------ consensus_9073#0 CACACGATCTAGCAAAGCTAGTCCGATTTCCTCTAAAACCAACTATTCATCCCAATAAAA 180 consensus_9073#1 ------------------------------------------------------------ consensus_9073#0 TTTGTCATGCCAAAAATCGAGTATATTGGTCGTCCATCTTTACACTTCTACGGCAAGCTC 240 consensus_9073#1 ------------------------------------------------------------ consensus_9073#0 CTGTCAGAAATTGCCAAAAACCTTAAAAATCGCGCCAAGGGTAGAGTGGTAATAAAGGAA 300 consensus_9073#1 ------------------------------------------------------------ consensus_9073#0 ACTGAGACAGCAAAATTCAAGGAGCCATGCTATTACATCTTAAAAAGTGTTGTTCCACTT 360 consensus_9073#1 ------------------------------------------------------------ consensus_9073#0 ATGTCCGATAAGACTGATGTTAGATGTAGAGCATGGGGTATACGAGTATTCCGTGGTCGA 420 consensus_9073#1 ------------------------------------------------------------ consensus_9073#0 AATCTTGGCTATTGTCTCCTACCGAATACACATGAACCAGATTGGCGTCTTTTGTCACCT 480 consensus_9073#1 ------------------------------------------------------------ consensus_9073#0 AGTGAAGCTGAACGTCTAACGTCCATGTCAACAAAAACCGATATGGCCGCTCCAGATGTT 540 consensus_9073#1 ------------------------------------------------------------ consensus_9073#0 CCAGTTAGCTGCGTCGCTCAAGCTCCTCCTTTATTGACAATATTTCTACGAAGAAAAAAT 600 consensus_9073#1 ------------------------------------------------------------ consensus_9073#0 GTACTTCCACCACCAGTAGTGGAAGAAGCTGAAAAATCTACTCACTCTTTAGATATACAA 660 consensus_9073#1 ------------------------------------------------------------ consensus_9073#0 CAATCAATGAGAGAAGCTAGTGGTTTATTATTGTTAACACCTCACCGTTATGATCCAACA 720 consensus_9073#1 ------------------------TTATTATTGTTAACACCTCACCGTTATGATCCAACA 36 ************************************ consensus_9073#0 AGTTTTAAAGTCCCTATTGAACCGACTTCCGAGGAGAAATCACGTATGTACCCTCCGTAT 780 consensus_9073#1 AGTTTTAAAGTCCCTATTGAACCGACTTCCGAGGAGAAATCACG---------------- 80 ******************************************** consensus_9073#0 GAATGGTCAGCTAAAAAAGGACTAATTATAAAGCCAAATTTAGATCGAGATTCTTATTTA 840 consensus_9073#1 --------------------ACCAATTATAAAGCCAAATTTAGATCGAGATTCTTATTTA 120 ** ************************************* consensus_9073#0 ATTCGTCGATCTGATACACCTGGCTTGTATTGGCGTGTTCATTTAGCGAAATCTTCAAAA 900 consensus_9073#1 ATTCGTCGATCTGATACACCTGGCTTGTATTGGCGTGTTCATTTAGCGAAATCTTCAAAA 180 ************************************************************ consensus_9073#0 ACAGAACAAGATAGTGAAACAGTTTCATAAACAGGAAGTTGTTATCAGAAGAAAGGGATT 960 consensus_9073#1 ACAGAACAAGATAGTGAAACAGTTTCATAAACAGGAAGTTGTTATCAGAAGAAAGGGATT 240 ************************************************************ consensus_9073#0 AGCCATATTCTTGATTGTTGATAATACAGTACTTAT------GTTTGTAAAAAAAAAAAA 1014 consensus_9073#1 AGCCATATTCTTGATTGTTGATAATACAGTACTTATTTTCAAGTTGGTAGTCTAGTTTCA 300 ************************************ *** *** * * consensus_9073#0 AAA--------------------------------------------------------- 1017 consensus_9073#1 AAACCACTACCTAATATACTTCGAATATAACTTACTCCTTGTACATATTTCCATTAGTTT 360 *** consensus_9073#0 ------------------------------------------------------------ consensus_9073#1 GAGGAAATTTTCGTTCTGGTAAGTTATCTTTCTTTGTAATAGTAAATGTTTCTGATTCCT 420 consensus_9073#0 ------------------------------------------ consensus_9073#1 TTTTACTAAAACTACTATTTTTCTTCAAACGATTCAATTCAA 462 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||