These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9074#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1034 fasta sequence [ACGAGGCCANAATTCGGCACGAGGCGAATTCTTCACATACTAATACTACTGTTGTACCATCATCTTCATTGTCATCGAGTAAATCTCTAAGTAAACGTGGACTAAAGCGTGAACTAGAAGATTTAGTTGCATCAGTTGTGAATCATTCACCAAGCAAAAGTCAACATGGACTCAGTTCGCCTACATTGACCAATCGAAACGAGACACAGTCATTGACTTTTATTAGTACTACTAATTCTACGACCACTGAAGATCAAACATCGTACAAGTCATCTGATCTAATTTTATGCAGTAAACACGATTGTTCTAAAGCTTATCATTTATTCTGTCTTGATTTAGATACACCACCTCAAGGTCAGTGGTTTTGTCCCTGGCACCATTGTGACGCATGCGGTCGTCCTTCTCATATTTTCTGTTCCATATGTCCATCTTCATTTTGTCTGGC-TCATGTTGAAGGTAGTATTGTTGTTCTGCCTCCAGTTCTACCAAAACGCAATCGTAAACTATCTAACAATCGATCTGAAAATAATGTTGACCCTATAGAAAATGGAAAATTCTACGCTCTCCTTGCTCGAATCGTTTGTATGTTTCACCATGACTTGATAAATAATGTTCACGACCGACCTGTATTAAAGAAAAAGAAGCCTAATCTACTAATGTCATCAACGTCGGATAAATCTGGGTAGTGTGAGAAAAATGTTTGTTCTGAAATGCCACAAGATCATTTGGATGGTAATAATGGTAGTCACTCCTCAGGATTGATGGTGACAAGACGTCAAAGCCTTTTGCGTCAGTCAGCAATATCCCAAGCTAAACATTGCAATGATATTAGTACGCCCAATAACAATGATAGTAATAATTCGACTAGTTCGTGTGGTTTAGAAACGAAGCAAAATGACTGTCTTTCAAATTGTGTAAACACAACACCAAATCGAACTATTGAGACCAACTAGAGATTGGTAGACTAATTTCAATGTCTGTTTATATGTGTATAATTGTATTACTTATTTTTTTTATACAAATAATAAAACTTG] [+] EMBL CD080747 [ACGAGGCCANAATTCGGCACGAGGCGAATTCTTCACATACTAATACTACTGTTGTACCATCATCTTCATTGTCATCGAGTAAATCTCTAAGTAAACGTGGACTAAAGCGTGAACTAGAAGATTTAGTTGCATCAGTTGTGAATCATTCACCAAGCAAAAGTCAACATGGACTCAGTTCGCCTACATTGACCAATCGAAACGAGACACAGTCATTGACTTTTATTAGTACTACTAATTCTACGACCACTGAAGATCAAACATCGTACAAGTCATCTGATCTAATTTTATGCAGTAAACACGATTGTTCTAAAGCTTATCATTTATTCTGTCTTGATTTAGATACACCACCTCAAGGTCAGTGGTTTTGTCCCTGGCACCATTGTGACGCATGCGGTCGTCCTTCTCATATTTTCTGTTCCATATGTCCATCTTCATTTTGTCTGGC TCATGTTGAAGGTAGTATTGTTGTTCTGCCTCCAGTTCTACCAAAACGCAATCGTAAACTATCTAACAATCGATCTGAAAATAATGTTGACCCTATAGAAAATGGAAAATTCTACGCTCTCCTTGCTCGAATCGTTTGTATGTTTCACCATGACTTGATAAATAATGTTCACGACCGACCTGTATTAAAGAAAAAGAAGCCTAATCTACTAATGTCATCAACGTCGGATAAATCTGGGTAGTGTGAGAAAAATGTTTGT ] [+] EMBL CD077632 [ CGAATTCTTCACATACTAATACTACTGTTGTACCATCATCTTCATTGTCATCGAGTAAATCTCTAAGTAAACGTGGACTAAAGCGTGAACTAGAAGATTTAGTTGCATCAGTTGTGAATCATTCACCAAGCAAAAGTCAACATGGACTCAGTTCGCCTACATTGACCAATCGAAACGAGACACAGTCATTGACTTTTATTAGTACTACTAATTCTACGACCACTGAAGATCAAACATCGTACAAGTCATCTGATCTAATTTTATGCAGTAAACACGATTGTTCTAAAGCTTATCATTTATTCTGTCTTGATTTAGATACAC ] [-] EMBL CD074672 [ TTCA TTTGTCTGGCNTCATGTTGAAGGTAGTATTGTTGTTCTGCCTCCAGTTCTACCAAAACGCAATCGTAAACTATCTAACAATCGATCTGAAAATAATGTTGACCCTATAGAAAATGGAAAATTCTACGCTCTCCTTGCTCGAATCGTTTGTATGTTTCACCATGACTTGATAAATAATGTTCACGACCGACCTGTATTAAAGAAAAAGAAGCCTAATCTACTAATGTCATCAACGTCGGATAAATCTGGTAAGTGTGAGAAAAATGTTTGTTCTGAAATGCCACAAGATCATTTGGATGGTAATAATGGTAGTCACTCCTCAGGATTGATGGTGACAAGACGTCAAAGCCTTTTGCGTCAGTCAGCAATATCCCAAGCTAAACATTGCAATGATATTAGTACGCCCAATAACAATGATAGTAATAATTCGACTAGTTCGTGTGGTTTAGAAACGAAGCAAAATGACTGTCTTTCAAATTGTGTAAACACAACACCAAATCGAACTATTGAGACCAACTAGAGATTGGTAGACTAATTTCAATGTCTGTTTATATGTGTATAATTGTATTACTTATTTTTTTTATACAAATAATAAAACTTG] [+] EMBL AF155785 [ TTGTTCTGCCTCCAGTTCTACCAAAACGCAATCGTAAACTATCTAACAATCGATCTGAAAATAATGTTGACCCTATAGAAAATGGAAAATTCTACGGACTCCTTGCTCGANTCGTTTGTATGTNTCACCATGACTTGATAAATAATGTTCACGNCCGACCTGTATTAAAGAAAAAGGAGCCTAATCTACTAAT ] consensusID : consensus_9074#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 912 fasta sequence [CTGATGGAGGCCCAGAGTGGTAATTTAAGCCGTTTTATGAATCATTCATGTGATCCAAATCTGAATACACAAAAATGGACTGTTAATGGAGATAATAGAATTGGTTTATTTGCTGTCAGAGATATATCTGTTGGTGATTTATTAACATTCAACTATAATTTTGTTGCATTGGGTCAAGAACGTTTGAATTGTCGATGTGGTGCGTCAAATTGTGTTGGTTTTCTTGGTGCACGTTCAGAATCATCAAATAATAATAATGGTAATGGACAAGCTGGTGGCAACTCATCTCATTATGGTGAATCAAATAATTCATCAAATGCCCTAATTAACACAGATATTAGTCGTGGATCATCTAAACGTCATACCGCTCAAACAAATCCACGCTCCAACGATATTGATAAGAGTTATGTGAAAGATGGACGTGATATATGTCCTAGTAAAGTTTCTAATCATAATCTATCTACTACTTCATTGGTGAACAATAACAAAAACGGTTCGATCAATGTGAATAGTCCCTTGAATATGAATAGACGTCACGAAACTAAATGTTTCCGGTGTGGTGAAAAATACGCTCCTGTTGGAAAGCGATCACTATCATTATTCAGTGAGACATTGAATCTAACGAATTCTTCACATACTAATACTACTGTTGTACCATCATCTTCATTGTCATCGAGTAAATCTCTAAGTAAACGTGGACTAAAGCGCGAACTAGAAGATTTAGTTGCATCAGTTGTGAATCATTCACCAAGCAAAAGTCAACATGGACTCAGTTCGCCTACATTGACCAATCGAAACGAGACACAGTCATTGACTTTTATTAGTACTACTAATTCTACGACCACTGAAGATCAAACATCGTACAAGTCATCTGATCTAATTTTATGCAGAAAACACGATTGTTCTAAAGCT] [+] EMBL CD114541 [CTGATGGAGGCCCAGAGTGGTAATTTAAGCCGTTTTATGAATCATTCATGTGATCCAAATCTGAATACACAAAAATGGACTGTTAATGGAGATAATAGAATTGGTTTATTTGCTGTCAGAGATATATCTGTTGGTGATTTATTAACATTCAACTATAATTTTGTTGCATTGGGTCAAGAACGTTTGAATTGTCGATGTGGTGCGTCAAATTGTGTTGGTTTTCTTGGTGCACGTTCAGAATCATCAAATAATAATAATGGTAATGGACAAGCTGGTGGCAACTCATCTCATTATGGTGAATCAAATAATTCATCAAATGCCCTAATTAACACAGATATTAGTCGTGGATCAT ] [+] EMBL CD114464 [ GTTTTATGAATCATTCATGTGATCCAAATCTGAATACACAAAAATGGACTGTTAATGGAGATAATAGAATTGGTTTATTTGCTGTCAGAGATATATCTGTTGGTGAAGAGTTAACATTCAACTATAATTTTGTTGCATTGGGTCAAGAACGTTTGAATTGTCGATGTGGTGCGTCAAATTGTGTTGGTTTTCTTGGTGCACGTTCAGAATCATCAAATAATAATAATGGTAATGGACAAGCTGGTGGCAACTCATCTCATTATGGTGAATCAAATAATTCATCAAATGCCCTAATTAACACAGATATTAGTCGTGGATCAT ] [-] EMBL CD114253 [ GCAACTCATCTCATTATGGGGAATCAAATAATTCATCAAATGCCCTAATTAACACAGATATTAGTCGTGGATCATCTAAACGTCATACCGCTCAAACAAATCCACGCTCCAACGATATTGATAAGAGTTATGTGAAAGATGGACGTGATATATGTCCTAGTAAAGTTTCTAATCATAATCTATCTACTACTTCATTGGTGAACAATAACAAAAACGGTTCGATCAATGTGAATAGTCCCTTGAATATGAATAGACGTCACGAAACTAAATGTTTCCGGTGTGGTGAAAAATACGCTCCTGTTGGAAAGCGATCACTATCATTATTCAGTGAGACATTGAATCTAACGAATTCTTCACATACTAATACTACTGTTGTACCATCATCTTCATTGTCATCGAGTAAATCTCTAAGTAAACGTGGACTAAAGCGCGAACTAGAAGATTTAGTTGCATCAGTTGTGAATCATTCACCAAGCAAAAGTCAACATGGACTCAGTTCGCCTACATTGACCAATCGAAACGAGACACAGTCATTGAC ] [+] EMBL AI975437 [ ACGATATTGATAAGAGTTATGTGAAAGATGGACGTGATATATGTCCTAGTAAAGTTTCTAATCATAATCTATCTACTACTTCATTGGTGAACAATAACAAAAACGGTTCGATCAATGTGAATAGTCCCTTGAATATGAATAGACGTCACGAAACTAAATGTTTCCGGTGTGGTGAAAAATACGCTCCTGTTGGAAAGCGATCACTATCATTATTCAGTGAGACATTGAATCTAACGAATTCTTCACATACTAATACTACTGTTGTACCATCATCTTCATTGTCATCGAGTAAATCTCTAAGTAAACGTGGACTAAAGCGTGAACTAGAAGATTTAGTTGCATCAGTTGTGAATCATTCACCAAGCAAAAGTCAACATGGACTCAGTTCGCCTACATTGACCAATCGAAACGAGACACAGTCATTGACTTTTATTAGTACTACTAATTCTACGACCACTGAAGATCAAACATCGTACAAGTCATCTGATCTAATTTTATGCAGAAAACACGATTGTTCTAAAGCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9074#0 ACGAGGCCANAATTCGGCACGAGGCGAATTCTTCACATACTAATACTACTGTTGTACCAT 60 consensus_9074#1 ------------------------------------------------------------ consensus_9074#0 CATCTTCATTGTCATCGAGTAAATCTCTAAGTAAACGTGGACTAAAGCGTGAACTAGAAG 120 consensus_9074#1 -------------------------------------CTGATGGAGGCCCAGAGTGGTAA 23 ** * ** * * * * consensus_9074#0 ATTTAGTTGCATCAGTTGTGAATCATTCACCAAGCAAAAGTCAACATGGACTCAGTTCGC 180 consensus_9074#1 TTTAAGCCGTTT----TATGAATCATTCATGTGATCCAAATCTGAATACACAAAAATGGA 79 ** ** * * * *********** ** ** ** ** * * * consensus_9074#0 CTACATTGACCAATCGAAACGAGACACAGTCATTGACTTTTATTAGTACTACTAATTCTA 240 consensus_9074#1 CTGT------TAATGGAGATAATAGA-----ATTGG--TTTATT--TGCTGTCAGAGATA 124 ** *** ** * * * * **** ****** * ** * ** consensus_9074#0 CGACCACTGAAGATCAAACATCGTACAAGTCATCTGATCTAATTTTATGCAGT-AAACAC 299 consensus_9074#1 TATCTGTTGGTGATTTATTAACATTCAACTA---TAATTTTGTTGCATTGGGTCAAGAAC 181 * ** *** * * * * *** * * ** * ** ** ** ** ** consensus_9074#0 GATTG--TTCTAAAGCTTATCATTTATTCTGTCTTGATTTAGATACACCACCTCAAGGTC 357 consensus_9074#1 GTTTGAATTGTCGATGTGGTGCGTCAAATTGTGTTGGTTTTCTTGGTGCACGTTCAGAAT 241 * *** ** * * * * * * *** *** *** * *** * ** consensus_9074#0 AGTGGTTTTGTCCCTGGCACCATTGTGACGCATGCGGTCGTCCTTCTCATATTTTCTGTT 417 consensus_9074#1 CATCAAATAATAATAATGGTAATGGACAAGCTGGTGGCAACTCATCTCAT-TATGGTGAA 300 * * * ** * * ** * ** * ****** * * ** consensus_9074#0 CCATATGTCCATCTTCATTTTGTCTGGCTCATGTTGAAGGTAGT-ATTGTTGTTCTGCCT 476 consensus_9074#1 TCAAATAAT--TCATCAAATGCCCTAATTAACACAGATATTAGTCGTGGATCATCTAAAC 358 ** ** ** *** * ** * * ** **** * * * *** consensus_9074#0 CCAGTTCTACCAAAACGCAATCGTAAACTATCTAACAATCGATCTGAAAATAATGTTGAC 536 consensus_9074#1 GTCATACCGCTCAAACAAATCC----ACGCTCCAACGATATTGATAAGAGTTATGTGAAA 414 * * * **** * * ** ** *** ** * * * * **** * consensus_9074#0 CCTATAGAAAATGGAAAATTCTACGCTCTCCTTGCTCGAATCGTTTGTATGTTTCACCAT 596 consensus_9074#1 GATGGACGTGATATATGTCCTAGTAAAGTTTCTAATC--ATAATCTATCTACTACTTCAT 472 * * ** * * * ** ** * * * * * * *** consensus_9074#0 GACTTGATAAATAATGTTCACGACCGACCTGTATTAAAGAAAAAGAAGCCTAATCTACTA 656 consensus_9074#1 ----TGGTGAACAATAA-CAAAAACGGTTCG-ATCAATGTGAATAGTCCCTTGAATATGA 526 ** * ** *** ** * ** * ** ** * ** *** ** * consensus_9074#0 AT-GTCATCA--ACGTCGGATAAATCTGGGTAGTGTGAGAAAAATGTTTGTTCTGAAATG 713 consensus_9074#1 ATAGACGTCACGAAACTAAATGTTTCCGG-TGTGGTGAAAAATACGCTCCTGTTGGAAAG 585 ** * * *** * ** ** ** * **** *** * * * * ** ** * consensus_9074#0 CCA-CAAGATCATTT----GGATGGTAATAATGGTAGTCACTCCTCAGGAT--TGATGGT 766 consensus_9074#1 CGATCACTATCATTATTCAGTGAGACATTGAATCTAACGAATTCTTCACATACTAATACT 645 * * ** ****** * * * * * ** * * ** ** * ** * consensus_9074#0 GACAAGACGTCAAAGCCTTTTGCGTCAGTCAGCAATATCCCAAGCTAAACATTGCAATGA 826 consensus_9074#1 ACTGTTGTACCATCATCTTCATTGTCATCGAGTAA-ATCTCTAAGTAAACGT-GGACTAA 703 ** *** **** ** ** *** * * ***** * * * * * consensus_9074#0 TATTAGTACGCCCAATAACAATGA-TAGTAATAATT-CGACTAGTTCGTGTGGTTTAGAA 884 consensus_9074#1 ----AGCGCGAACTAGAAGATTTAGTTGCATCAGTTGTGAATCATTCACCAAGCA-AAAG 758 ** ** * * ** * * * * * * * ** ** * *** * * * consensus_9074#0 ACGAAGCAAAATGACTGTCTTTCAAATTGTGTAAACACAACACCAAATCGAACTATTGAG 944 consensus_9074#1 TCAACATGGACTCAGT-TCGCCTACATTGACCAATCGAAACG--AGACACAGTCATTGAC 815 * * * * * * ** * **** ** * *** * * * ***** consensus_9074#0 ACCAACTAGAGATTGGTAGACTAATTTCAATGTCTGTTTATATGTGTATAA-TTGTATTA 1003 consensus_9074#1 TTTTATTAGTACTACTAATTCTACGACCACTGAAGATCAAACATCGTACAAGTCATCTGA 875 * *** * * *** ** ** * * *** ** * * * * consensus_9074#0 CTTATTTTTTTTATACAAATAATAAAACTTG--------- 1034 consensus_9074#1 TCTAATT---TTATGCAGAAAACACGATTGTTCTAAAGCT 912 ** ** **** ** * ** * * * |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||