cluster # 9077

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Schistosoma mansoni
cluster # 9077 cluster # 9077 Sequences # 8 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9077#0 length = 633 sequences # 5

consensus_9077#1 length = 460 sequences # 3

consensusID : consensus_9077#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 633
fasta sequence

                              [TACGCAGTACGGTAATGCAGCTGCATGGCATGTTTTTTTTTTTTTTTTTTTTTTTTT-----TTTTTTTTAAGAATGGGATATTTTCTTAGAGAATATACATGATTTTACAGACAAAGAAAAGATACTACAATGGAATGAGAAAATCAGTAAAACAAGGTTTTGAAACAAATAAAGTATCAATTACTCCAGTATATTTCAGCGAATAAGTCAATCTAAACTATTTACATGATTCAGATAAATCAAGTTCTAGTAGGTACGGTGTTAAATATGTTATGATAATTGATGCACCGGCACGACGGAATGCAGTCATCAATTCTAAGGCGGCTTGCTTTAAATCGATAGCCCCAGCATTTGCGGCATGTTTTAGCATTGCATATTCACCAGAAACATGATAAACTGCTAGAGGATGATGAGGTAGCAACTGTCGTAGCTCATTCACAATATCCAGATAAGGAAGACCAGGTTTTACCATTATGAAGTCAGCTCCTTCGTTCGCATCGCGAATAGCAGCACGTATAGCCAATCCTTTGTCACCAGGAGGAAGCTGGTAATGCCGACGGTCTCCAAAAGAAGGTGCAGATTGAGCAGCATCTCTGAAAGGACCGTACAAACAAGATGCAAATTTGGCTGAATAAG]

[+] EMBL AI975825             [TACGCAGTACGGTAATGCAGCTGCATGGCATG TTTTTTTTTTTTTTTTTTTTTTTT     TTTTTTTTAAGAATGGGATATTTTCTTAGAGAATATACATGATTTTACAGACAAAGAAAAGATACTACAATGGAATGAGAAAATCAGTAAAACAAGGTTTTGAAACAAATAAAGTATCAATTACTCCAGTATATTTCACCGAATAAGTCAATCTAAACTATTTACATGATTCAGATAAATCAAGTTCTAGTAGGTACGGTGTTAAATATGTTATGATAATTGATGCACCGGCACGACGGAATGCAGTCATCAATTCTAAGGCGGCTTGCTTTAAATCGATAGCCCCAGCATTTGCGGCATGTTTTAACATTGCATATTCACCAGAAACATGATAAACTGCTAGAGGATGATGAGGTAGCAACTGTCGTAGCTCATTCACAATATCCAGATAAGGAAGACCAGGTTTTACCATTATGAAGTCAGCTCCTTCGTTCGCATCGCGAATAGCAGCACGTATAGCCAATCCTTTGTCACCAGGAGGAAGC                                                                                           ]
[+] EMBL AI976301             [TACGCAGTACGGTAATGCAGCTGCATGGCATGTTTTTTTTTTTTTTTTTTTTTTTTT     TTTTTTTTAAGAATGGGATATTTTCTTAGAGAATATACATGATTTTACAGACAAAGAAAAGATACTACAATGGAATGAGAAAATCAGTAAAACAAGGTTTTGAAACAAATAAAGTATCAATTACTCCAGTATATTTCAGCGAATAAGTCAATCTAAACTATTTACATGATTCAGATAAATCAAGTTCTAGTAGGTACGGTGTTAAATATGTTATGATAATTGATGCACCGGCACGACGGAATGCAGTCATCAATTCTAAGGCGGCTTGCTTTAAATCGATAGCCCCAGCATTTGCGGCATGTTTTAGCATTGCATATTCACCAGAAACATGATAAACTGCTAGAGGATGATGAGGTAGCAACTGTCGTAGCTCATTCACAATATCCAGATAAGGAAGACCAGGTTTTA                                                                                                                                                                        ]
[+] EMBL AI395744             [                                TTTTTTTTTTTTTTTTTTTTTTTTTAAAGCTAATAGATAAGAATGGGATATTTTCTTAGAGAATATACATGATTTTACAGACAAAGAAAAGATACTACAATGGAATGAGAAAATCAGTAAAACAAGGTTTTGAAACAAATAAAGTATCAATTACTCCAGTATATTTCAGCGAATAAGTCAATCTAAACTATTTACATGATTCAGATAAATCAAGTTCTAGTAGGTACGGTGTTAAATATGTTATGATAATTGATGCACCGGCACGACGGAATGCAGTCATCAATTCTAAGGCGG TTGCTTTAAATCGATAG CCCAG ATTTGCGG ATGTTTTAGCA TGCATATCCACAAG AACATGAT AACTGCTAGA GATGATGA                                                                                                                                                                                                                               ]
[+] EMBL CD074648             [                                                                               ATATTTTCTTAGAGAATATACATGATTTTACAGACAAAGAAAAGATACTACAATGGAATGAGAAAATCAGTAAAACAAGGTTTTGAAACAAATAAAGTATCAATTACTCCAGTATATTTCAGCGAATAAGTCAATCTAAACTATTTACATGATTCAGATAAATCAAGTTCTAGTAGGTACGGGGTTAAATATGTTATGATAATTGATGCACCGGCACGACGGAATGCAGTCATCAATTCTAAGGCGGCTTGCTTTAAATCGATAGCCCCAGCATTTGCGGCATGTTTTAGCATTGCATATTCACCAGAAACATGATAAACTGCTAGAGGATGATGAGGTAGCAACTGTCGTAGCTCATTCACAATATCCAGATAAGGAAGACCAGGTTTTACCATTATGAAGTCAGCTCCTTCGTTCGCATCGCGAATAGCAGCACGTAGAGCCAATCCTTTGGCACCAGGAGGAAGCTGGTAATGCCGACGGTCTCCAAAAGAAGGTGCAGATTGAGCAGCATCTCTGAAAGGACCGTACAAACAAGATGCAAATTTGGCTGAATAAG]
[-] EMBL CD158564             [                                                                                                                                                                                                                                                                                                                                                  CGATAGCCCCAGCATTTGCGGCATGTTTTAGCATTGCATATTCACCAGAAACATGATAAACTGCTAGAGGATGATGAGGTAGCAACTGTCGTAGCTCATTCACAATATCCAGATAAGGAAGACCAGGTTTTACCATTATGAAGTCAGCTCCTTCGTTCGCATCGCGAATAGCAGCACG                                                                                                                          ]




>consensus_9077#0
TACGCAGTACGGTAATGCAGCTGCATGGCATGTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTAAGAATGGGATATTTTCTTAGAGAATATACATGATTTTACAGACAAAGAAAAGAT
ACTACAATGGAATGAGAAAATCAGTAAAACAAGGTTTTGAAACAAATAAAGTATCAATTA
CTCCAGTATATTTCAGCGAATAAGTCAATCTAAACTATTTACATGATTCAGATAAATCAA
GTTCTAGTAGGTACGGTGTTAAATATGTTATGATAATTGATGCACCGGCACGACGGAATG
CAGTCATCAATTCTAAGGCGGCTTGCTTTAAATCGATAGCCCCAGCATTTGCGGCATGTT
TTAGCATTGCATATTCACCAGAAACATGATAAACTGCTAGAGGATGATGAGGTAGCAACT
GTCGTAGCTCATTCACAATATCCAGATAAGGAAGACCAGGTTTTACCATTATGAAGTCAG
CTCCTTCGTTCGCATCGCGAATAGCAGCACGTATAGCCAATCCTTTGTCACCAGGAGGAA
GCTGGTAATGCCGACGGTCTCCAAAAGAAGGTGCAGATTGAGCAGCATCTCTGAAAGGAC
CGTACAAACAAGATGCAAATTTGGCTGAATAAG

consensusID : consensus_9077#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 460
fasta sequence

                              [TTTTTTTTTTTTTTTTTCCTATACTAGTAATTTATTAATAAACTAGGATAATAAACACAGATACAGAAAGATGAGAATTAAAGCTAATAGATAAGAATGGGATATTTTCTTAGAGAATATACATGATTTTACAGACAAAGAAAAGATACTACAATGGAATGAGAAAATCAGTAAAACAAGGTTTTGAAACAAATAAAGTATCAATTACTCCAGTATATTTCAGCGAATAAGTCAATCTAAACTATTTACATGATTC-AGATAAATCAAGTTCTAGTAGGTACGGTGTTAAATATGTTATGATATTTGAGGCACCGGCACGACGGAATGCAGTCATCAATTCTAAGGCGGCTTGCTTTAAATCGATAGCCCCAGCATTTTGCGGATGTTTTAGCATTGCATATTCAACCAGAAACATGATAAACTGGCTAGAGATGATGAGGTAGCAACTGGTCGTACTCAT]

[+] EMBL AI394889             [TTTTTTTTTTTTTTTTTCCTATACTAGAAACTTATGAAGAAACTAGGATAATAATTACAGATACAGAAAGATGAGAATTAAAGCTAATAGATAAGAATGGGATATTTTCTTAGAGAATATACATGATTTTACAGACAAAGAAAAGATACTACAATGGAATGAGAAAATCAGTAAAACAAGGTTTTGAAACAAATAAAGTATCAATTACTCCAGTATATTTCAGCGAATAAGTCAATCTAAACTATTTACATGATTC AGATAAATCAAGTTCTAGTAGGTACGGTGTTAAATATGTTATGATATTTGAG                                                                                                                                                        ]
[+] EMBL AI395123             [TTTTTTTTTTTTTTTTTCCTATACTAGTAATTTATTAATAAACTAGGATAATAAACACAGATACAGAAAGATGAGAATTAAAGCTAATAGATAAGAATGGGATATTTTCTTAGAGAATATACATGATTTTACAGACAAAGAAAAGATACTACAATGGAATGAGAAAATCAGTAAAACAAGGTTTTGAAACAAATAAAGTATCAATTACTCCAGTATATTTCAGCGAATAAGTCAATCTAAACTATTTACATGATTCAAGATAA                                                                                                                                                                                                      ]
[+] EMBL AI395085             [    TTTTATTTTTTTTCCTATACTAGTAATTTATTAATAAACTAGGATAATAAACACAGATACAGAAAGATGAGAATTAAAGCTAATAGATAAGAATGGGATATTTTCTTAGAGAATATACATGATTTTACAGACAAAGAAAAGATACTACAATGGAATGAGAAAATCAGTAAAACAAGGTTTTGAAACAAATAAAGTATCAATTACTCCAGTATATTTCAGCGAATAAGTCAATCTAAACTATTTACATGATTC AGATAAATCAAGTTCTAGTAGGTACGGTGTTAAATATGTTATGATAATTGATGCACCGGCACGACGGAATGCAGTCATCAATTCTAAGGCGGCTTGCTTTAAATCGATAGCCCCAGCATTTTGCGGATGTTTTAGCATTGCATATTCAACCAGAAACATGATAAACTGGCTAGAGATGATGAGGTAGCAACTGGTCGTACTCAT]




>consensus_9077#1
TTTTTTTTTTTTTTTTTCCTATACTAGTAATTTATTAATAAACTAGGATAATAAACACAG
ATACAGAAAGATGAGAATTAAAGCTAATAGATAAGAATGGGATATTTTCTTAGAGAATAT
ACATGATTTTACAGACAAAGAAAAGATACTACAATGGAATGAGAAAATCAGTAAAACAAG
GTTTTGAAACAAATAAAGTATCAATTACTCCAGTATATTTCAGCGAATAAGTCAATCTAA
ACTATTTACATGATTCAGATAAATCAAGTTCTAGTAGGTACGGTGTTAAATATGTTATGA
TATTTGAGGCACCGGCACGACGGAATGCAGTCATCAATTCTAAGGCGGCTTGCTTTAAAT
CGATAGCCCCAGCATTTTGCGGATGTTTTAGCATTGCATATTCAACCAGAAACATGATAA
ACTGGCTAGAGATGATGAGGTAGCAACTGGTCGTACTCAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9077#0      ---------------------TAC--GCAGTACGGTAATGCAGCTGCATGGCATGTTTTT 37
consensus_9077#1      TTTTTTTTTTTTTTTTTCCTATACTAGTAATTTATTAATAAACTAGGATAATAAACACAG 60
                                           ***  * * *    ****  *   * **   *       

consensus_9077#0      TTTTTTTTTTTTTTTTTTT----TTTTTTTTTAAGAATGGGATATTTTCTTAGAGAATAT 93
consensus_9077#1      ATACAGAAAGATGAGAATTAAAGCTAATAGATAAGAATGGGATATTTTCTTAGAGAATAT 120
                       *         *     **     *  *   *****************************

consensus_9077#0      ACATGATTTTACAGACAAAGAAAAGATACTACAATGGAATGAGAAAATCAGTAAAACAAG 153
consensus_9077#1      ACATGATTTTACAGACAAAGAAAAGATACTACAATGGAATGAGAAAATCAGTAAAACAAG 180
                      ************************************************************

consensus_9077#0      GTTTTGAAACAAATAAAGTATCAATTACTCCAGTATATTTCAGCGAATAAGTCAATCTAA 213
consensus_9077#1      GTTTTGAAACAAATAAAGTATCAATTACTCCAGTATATTTCAGCGAATAAGTCAATCTAA 240
                      ************************************************************

consensus_9077#0      ACTATTTACATGATTCAGATAAATCAAGTTCTAGTAGGTACGGTGTTAAATATGTTATGA 273
consensus_9077#1      ACTATTTACATGATTCAGATAAATCAAGTTCTAGTAGGTACGGTGTTAAATATGTTATGA 300
                      ************************************************************

consensus_9077#0      TAATTGATGCACCGGCACGACGGAATGCAGTCATCAATTCTAAGGCGGCTTGCTTTAAAT 333
consensus_9077#1      TATTTGAGGCACCGGCACGACGGAATGCAGTCATCAATTCTAAGGCGGCTTGCTTTAAAT 360
                      ** **** ****************************************************

consensus_9077#0      CGATAGCCCCAGCATTTGCGGCATGTTTTAGCATTGCATATTCA-CCAGAAACATGATAA 392
consensus_9077#1      CGATAGCCCCAGCATTTTGCGGATGTTTTAGCATTGCATATTCAACCAGAAACATGATAA 420
                      *****************   * ********************** ***************

consensus_9077#0      ACTGCTAGAGGATGATGAGGTAGCAACTG-TCGTAGCTCATTCACAATATCCAGATAAGG 451
consensus_9077#1      ACTGGCTAGAGATGATGAGGTAGCAACTGGTCGTA-CTCAT------------------- 460
                      ****      ******************* ***** *****                   

consensus_9077#0      AAGACCAGGTTTTACCATTATGAAGTCAGCTCCTTCGTTCGCATCGCGAATAGCAGCACG 511
consensus_9077#1      ------------------------------------------------------------
                                                                                  

consensus_9077#0      TATAGCCAATCCTTTGTCACCAGGAGGAAGCTGGTAATGCCGACGGTCTCCAAAAGAAGG 571
consensus_9077#1      ------------------------------------------------------------
                                                                                  

consensus_9077#0      TGCAGATTGAGCAGCATCTCTGAAAGGACCGTACAAACAAGATGCAAATTTGGCTGAATA 631
consensus_9077#1      ------------------------------------------------------------
                                                                                  

consensus_9077#0      AG 633
consensus_9077#1      --