These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9079#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1036 fasta sequence [TTCGGGCCAAAAATTCGGCACGAGGGCTGTCAATATGNGCTTTTACGACAAGTATGATTCCGGAACAAGCTCAAGTTAAAGATCGTGCTGATGAACTTCTATCTTTATGTAAAAAAGCAGTTGCTGACTGCAATAACGTGAAAACAACACTTGATTCACTTGACAAGTTACGTTGTAAACAACGTTGTTCCAAAGTTGTCAAAAGTCAATTGAAGTCCCTATACACACAGGCAATTAGTGAAGCTGAACATCAAAAAGCTACTCTTATGGCTGCTCTAGAAAAGGTATCGGAGATTCGTGCTATAGAATATAAGTTGAGAACACATGTTGGTCCGAAAAGTTTTCGCCGCGGTGTACTAATGTCAGTTTTGCAAGAAAATGCCAAATCGATACCACTTTGGATAGGTAAACCCGGTGAGAGTCCCCCTGCTCTGTGTGGTGCAACAGGACCATCACCAGATATTCCCGCTGATCCTGGTGATCATGTTGCTGCCCTTGTCCCAGAACCAGACGTGGCAGCTGCTGCTTGTAATTTATCTGAAGGTTGTATATTGGCTGAGGTTGTTTCGTATAATTCTGATAAAGAAATCTATGAGGTAGAAGATGTTGATGCCGAAGAAGGAAAGATGCGTTACTCTCTATCCTGTTCTAAAGTTATACCTTTACCAAAATGGAAAGCCAATCCGATTACAAATCCTGAGGCAATATTCAATAAAGGTTCTACTGTTTTGGCTCTTTATCCACAAACAACATGTTTCTACAAAGCAATTGTGGATGAAATTCCAACTCATATACATGATGAGTATTCCCTTTATTTTGAGGATTCATCCTACCCTGAAGGTTATGCTCCAGCTATTAAAATACCACAACGATATGTTATTCAATGTCCTGACAAAGAAGCAATGACGAGTAAACATTTAGACAGGTCAAAAAAACGTGGTAAAAAACTATGAAGTTATTACTTATAATCTTAACTTCTTCCATCTTGCAGTTGTGTAAATATAACTAGTTTCTTTGTTGAAAAAAAAAAAAAAAA] [+] EMBL CD081953 [TTCGGGCCAAAAATTCGGCACGAGGGCTGTCAATATGNGCTTTTACGACAAGTATGATTCCGGAACAAGCTCAAGTTAAAGATCGTGCTGATGAACTTCTATCTTTATGTAAAAAAGCAGTTGCTGACTGCAATAACGTGAAAACAACACTTGATTCACTTGACAAGTTACGTTGTAAACAACGTTGTTCCAAAGTTGTCAAAAGTCAATTGAAGTCCCTATACACACAGGCAATTAGTGAAGCTGAACATCAAAAAGCTACTCTTATGGCTGCTCTAGAAAAGGTATCGGAGATTCGTGCTATAGAATATAAGTTGAGAACACATGTTGGTCCGAAAAGTTTTCGCCGCGGTGTACTAATGTCAGTTTTGCAAGAAAATGCCAAATCGATACCACTTTGGATAGGTAAACCCGGTGAGAGTCCCCCTGCTCTGTGTGGTGCAACAGGACCATCACCAGATATTCCCGCTGATCCTGGTGATCATGTTGCTGCCCTTGTCCCAGAACCAGACGTGGCAGCTGCTGCTTGTAATTTATCTGAAGGTTGTAT ] [-] EMBL CD187323 [ GTATGATTCCGGAACAAGCTCAAGTTAAAGATCGTGCTGATGAACTTCTATCTTTATGTAAAAAAGCAGTTGCTGACTGCAATAACGTGAAAACAACACTTGATTCACTTGACAAGTTACGTTGTAAACAACGTTGTTCCAAAGTTGTCAAAAGTCAATTGAAGTCCCTATACACACAGGCAATTAGTGAAGCTGAACATCAAGAAGCTACTCTTATGGCTGCTCTAGAAAAGGTATCGGAGATTCGTGCTATAGAATATAAGTTGAGAACACATGTTGGTCCGAAAAGTTTTCGCCGCGGTGTACTAATGTCAGTTTTGCAAGAAAATGCCAAATCGATACCACTTTGGATAGGTAAACCCGGTGAGAGTCCCCCTGCTCTGTGTGGTGCAACAGGACCATCACCAGATATTCCCGCTGATCCTGGTGATCATGTTGCTG ] [-] EMBL CD187314 [ ACTGCAATAACGTGAAAACAACACGTGATTCACTTGACAAGTTACGTTGTAAACTACGTTGTTCCAAAGTTGTCAAAAGTCAATTGAAGTCCCTATACACACAGGCAATTAGTGAAGCTGAACATCAAAAAGCTACTCTGATGGCTGCTCTAGAAAAGGTATCGGAGATTCGTGCTATAGAATATAAGTTGAGAACACATGTTGGTCCGAAAAGTTTTCGCCGCGGTGTACTAATGTCAGTTTTGCAAGAAAATGCCAAATCGATACCACTTGGGATAGGTAAACCCGGTGAGAGTCCCCCTGCTCTGTGTGGTGCAACAGGACCATCACCAGATATTCCCGCTGATCCTGGTGATCATGTTGCTG ] [+] EMBL CD180224 [ TTTTCGCCGCGGTGTACTAATGTCAGTTTTGCAAGAAAATGCCAAATCGATACCACTTTGGATAGGTAAACCCGGTGAGAGTCCCCCTGCTCTGTGTGGTGCAACAGGACCATCACCAGATATTCCCGCTGATCCTGGTGATCATGTTGCTGCCCTTGTCCCAGAACCAGACGTGGCAGCTGCTGCTTGTAATTTATCTGAAGGTTGTATATTGGCTGAGGTTGTTTCGTATAATTCTGATAAAGAAATCTATGAGGTAGAAGATGTTGATGCCGAAGAAGGAAAGATGCGTTACTCTCTATCCTGTTCTAAAGTTATACCTTTACCAAAATGGAAAGCCAATCCGATTACAAATCCTGAGGCAATATTCAATAAAGGTTCTACTGTTTTGGCTCTTTATCCACAAACAACATGTTTCTACAAAGCAATTGTG ] [+] EMBL CD158696 [ gagcggcTTTCGCCGCGGTGTACTAATGTCAGTTTTGCAAGAAAATGCCAAATCGATACCACTTTGGATAGGTAAACCCGGTGAGAGTCCCCCTGCTCTGTGTGGTGCAACAGGACCATCACCAGATATTCCCGCTGATCCTGGTGATCATGTTGCTGCCCTTG ] [-] EMBL AI395586 [ ATATTCAATAAA GTTCTACTGTTTTGGCTCTTTATCCACAAACAACATGTTTNTACAAAGCAATTGTGGATGAAATTCCAACTCATATACATGATGAGTATTCCCTTTATTTTGAGGATTCATCCTACCCTGAAGGTTATGCTCCAGCTATTAAAATACCACAACGATATGTTATTCAATGTCCTGACAAAGAAGCAATGACGAGTAAACATTTAGACAGGTCAAAAAAACGTGGTAAAAAACTATGAAGTTATTACTTATAATCTTAACTTCTTCCATCTTGCAGTTGTGTAAATATAACTAGTTTCTTTGTTGAAAAAAAAAAAAAAAA] consensusID : consensus_9079#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 484 fasta sequence [TTAGTATTCCAAGGTCAGTTCCGAATTTAGTTCAGAAAACAAAATGGATCCAACACTTTGAACTTTTGATAATTATTTATACACCTGTCAATATGGCTTTTACGACAAGTATGATTCCGGAACAAGCTCAAGTTAAAGATCGTGCTGATGAACTTCTATCTTTATGCTGACTGCAATAACGTGAAAACAACACTTGATTCACTTGACAAGTTACGTTGTAAACAACGTTGTTCCAAAGGTTAGTTAGTAGGTTATGGCAGTAATACTGACAATTAAAGTTGTCAAAAGTCAATTGAAGTCCCTATACACACAGGCAATTAGTGAAGCTGAACATCAAAAAGCTACTCTTATGGCTGCTCTAGAAAAGGTATCGGAGATTCGTGCTATAGAATATAAGTTGAGAACACATGTTGGTCCGAAAAGTTTTCGCCGCGGTGTACTAATGTCAGTTTTGCAAGAAAATGCCAAATCGATACCACTTTGG] [-] EMBL CD133024 [TTAGTATTCCAAGGTCAGTTCCGAATTTAGTTCAGAAAACAAAATGGATCCAACACTTTGAACTTTTGATAATTATTTATACACCTGTCAATATGGCTTTTACGACAAGTATGATTCCGGAACAAGCTCAAGTTAAAGATCGTGCTGATGAACTTCTATCTTTATGCTGACTGCAATAACGTGAAAACAACACTTGATTCACTTGACAAGTTACGTTGTAAACAACGTTGTTCCAAAGGTTAGTTAGTAGGTTATGGCAGTAATACTGACAATTAAAGTTGTCAAAAGTCAATTGAAGTCCCTATACACACAGGCAATTAGTGAAGCTGAACATCAAAAAGCTACTCTTATGGCTGCTCTAGAAAAGGTATCGGAGATTCGTGCTATAGAATATAAGTTGAGAACACATGTTGGTCCGAAAAGTTTTCGCCGCGGTGTACTAATGTCAGTTTTGCAAGAAAATGCCAAATCGATACCACTTTGG] consensusID : consensus_9079#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 401 fasta sequence [GCATAATTTTTAGTCAAGGCGTTACTCTCTATCCTGTTCTAAAGTTATACCTTTACCAAAATGGAAAGCCAATCCGATTACAAATCCTGAGGCAATATTCAATAAAGGTTTTACTGTTTTGGCTCTTTATCCACAAACAACATGTTTTTACAAAGCAATTGTGGATGAAATTCCAACTCATATACATGATGAGTATTCCCTTTATTTTGAGGATTCATCCTACCCTGAAGGTTATGCTCCAGCTATTAAAATACCACAACGATATGTTATTCAATGTCCTGACAAAGAAGCAATGACGAGTAAACATTTAGACAGGTCAAAAAAACGTGGTAAAAAACTATGAAGTTATTACTTATAATCTTAACTTCTTCCATCTTGCAGTTGTGTAAATATAACTAGTT] [-] EMBL CD076468 [GCATAATTTTTAGTCAAGGCGTTACTCTCTATCCTGTTCTAAAGTTATACCTTTACCAAAATGGAAAGCCAATCCGATTACAAATCCTGAGGCAATATTCAATAAAGGTTTTACTGTTTTGGCTCTTTATCCACAAACAACATGTTTTTACAAAGCAATTGTGGATGAAATTCCAACTCATATACATGATGAGTATTCCCTTTATTTTGAGGATTCATCCTACCCTGAAGGTTATGCTCCAGCTATTAAAATACCACAACGATATGTTATTCAATGTCCTGACAAAGAAGCAATGACGAGTAAACATTTAGACAGGTCAAAAAAACGTGGTAAAAAACTATGAAGTTATTACTTATAATCTTAACTTCTTCCATCTTGCAGTTGTGTAAATATAACTAGTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9079#0 TTCGGGCCAAAAATTCGGCACGAGGGCTGTCAATATGNGCTTTTACGACAAGTATGATTC 60 consensus_9079#2 ------------------------------------------------------------ consensus_9079#1 ------------------------------------------------------------ consensus_9079#0 CGGAACAAGCTCAAGTTAAAGATCGTGCTGATGAACTTCTATCTTTATGTAAAAAAGCAG 120 consensus_9079#2 ------------------------------------------------------------ consensus_9079#1 ------------------------------------------------------------ consensus_9079#0 TTGCTGACTGCAATAACGTGAAAACAACACTTGATTCACTTGACAAGTTACGTTGTAAAC 180 consensus_9079#2 ------------------------------------------------------------ consensus_9079#1 ------------------------------------------------------------ consensus_9079#0 AACGTTGTTCCAAAGTTGTCAAAAGTCAATTGAAGTCCCTATACACACAGGCAATTAGTG 240 consensus_9079#2 ------------------------------------------------------------ consensus_9079#1 ------------------------------------------------------------ consensus_9079#0 AAGCTGAACATCAAAAAGCTACTCTTATGGCTGCTCTAGAAAAGGTATCGGAGATTCGTG 300 consensus_9079#2 ------------------------------------------------------------ consensus_9079#1 ------------------------------------------------------------ consensus_9079#0 CTATAGAATATAAGTTGAGAACACATGTTGGTCCGAAAAGTTTTCGCCGCGGTGTACTAA 360 consensus_9079#2 ------------------------------------------------------------ consensus_9079#1 ------------------------------------------------------------ consensus_9079#0 TGTCAGTTTTGCAAGAAAATGCCAAATCGATACCACTTTGGATAGGTAAACCCGGTGAGA 420 consensus_9079#2 ------------------------------------------------------------ consensus_9079#1 ------------------------------------------------------------ consensus_9079#0 GTCCCCCTGCTCTGTGTGGTGCAACAGGACCATCACCAGATATTCCCGCTGATCCTGGTG 480 consensus_9079#2 ------------------------------------------------------------ consensus_9079#1 ------------------------------------------------------------ consensus_9079#0 ATCATGTTGCTGCCCTTGTCCCAGAACCAGACGTGGCAGCTGCTGCTTGTAATTTATCTG 540 consensus_9079#2 ------------------------------------------------------------ consensus_9079#1 ------------------------------------------------------------ consensus_9079#0 AAGGTTGTATATTGGCTGAGGTTGTTTCGTATAATTCTGATAAAGAAATCTATGAGGTAG 600 consensus_9079#2 ------------------------------------------------------------ consensus_9079#1 ----------------------------------------TTAGTATTCCAAGGTCAGTT 20 consensus_9079#0 AAGATGTTGATGCCGAAGAAGGAAA-GATGCGTTACTCTCTA-TCCTGTTCTAAAGTTAT 658 consensus_9079#2 -----------GCATAATTTTTAGTCAAGGCGTTACTCTCTA-TCCTGTTCTAAAGTTAT 48 consensus_9079#1 CCGAATTTAGTTCAGAAAACAAAATGGATCCAACACTTTGAACTTTTGATAATTATTTAT 80 * ** * * * *** * * * ** * * **** consensus_9079#0 ACCTTTACCAAAATGGAAAGCCAATCCGATTACAAATCCTGAGGCAATATTCAATAAAGG 718 consensus_9079#2 ACCTTTACCAAAATGGAAAGCCAATCCGATTACAAATCCTGAGGCAATATTCAATAAAGG 108 consensus_9079#1 ACACCTGTCAATATGGCTT-TTACGACAAGTATGATTCCGGAACAAGCTCAAGTTAAAGA 139 ** * *** **** * * * ** * *** ** * ***** consensus_9079#0 TTCTACTGTTTTGGCTCTTTATCCACAAACAACATGTTTCTACAAAGCAATTGTGGATGA 778 consensus_9079#2 TTTTACTGTTTTGGCTCTTTATCCACAAACAACATGTTTTTACAAAGCAATTGTGGATGA 168 consensus_9079#1 TCGTGCTGA--TGAACTTCTATCTTTATGCTGACTGCAATAACGTGAAAACAACACTTGA 197 * * *** ** * **** * * ** ** ** *** consensus_9079#0 AATTCCAACTCATATACATGATGAGTATTCCCTTTATTTTGAGGATTCATCCTACCCTGA 838 consensus_9079#2 AATTCCAACTCATATACATGATGAGTATTCCCTTTATTTTGAGGATTCATCCTACCCTGA 228 consensus_9079#1 TTCACTTGACAAGTTACGTTGTAAACA---ACGTTGTTCCAAAGGTTAGTTAGTAGGTTA 254 * * *** * * * * * ** ** * * ** * * * consensus_9079#0 AGGTTATGCT-CCAGCTATTAAAAT-ACCACAACGATATGTTATTCAATGTCCTGACAAA 896 consensus_9079#2 AGGTTATGCT-CCAGCTATTAAAAT-ACCACAACGATATGTTATTCAATGTCCTGACAAA 286 consensus_9079#1 TGGCAGTAATACTGACAATTAAAGTTGTCAAAAGTCAATTGAAGTCCCTATACACACAGG 314 ** * * * * ****** * ** ** ** * ** * * * *** consensus_9079#0 GAAGCAATGACG------AGTAAACATTTA-------GACAGGTCAAAAAAACGTGGTAA 943 consensus_9079#2 GAAGCAATGACG------AGTAAACATTTA-------GACAGGTCAAAAAAACGTGGTAA 333 consensus_9079#1 CAATTAGTGAAGCTGAACATCAAAAAGCTACTCTTATGGCTGCTCTAGAAAAGGTATCGG 374 ** * *** * * *** * ** * * * ** * **** ** consensus_9079#0 AAAACTATG----AAGTTATTACTTATAATCTTAACTTCTTCCA------TCTTGCAGTT 993 consensus_9079#2 AAAACTATG----AAGTTATTACTTATAATCTTAACTTCTTCCA------TCTTGCAGTT 383 consensus_9079#1 AGATTCGTGCTATAGAATATAAGTTGAGAACACATGTTGGTCCGAAAAGTTTTCGCCGCG 434 * * ** * *** * ** * * * ** *** * * ** * consensus_9079#0 GTGTAAATATAACTAGTTTCTTTGTTGAAAAAAAAAAAAAAAA------- 1036 consensus_9079#2 GTGTAAATATAACTAGTT-------------------------------- 401 consensus_9079#1 GTGTACTAATGTCAGTTTTGCAAGAAAATGCCAAATCGATACCACTTTGG 484 ***** ** * ** |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||