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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9082#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1126 fasta sequence
[GAGTTGTCAGACGAGAGTTTGTTGGCATG-GTCGAAAAGTCATGTCATTGAATCTGGCTTATGTGTTACATGTTGTCGCGGGTTTTTAATGTCGTTTTTTATCAGCTTATCAAAGTATTTTTCCGTCACTTGTTAATTTTTGCAATATTTATGCGTGTTACATGGCGTTTATTGCAGTCTATTGGTTGCCTGACGTATTTGGAGCTGACAACCTGAATGAATGTTTAGTCAGCCCTATTTGATAATTTGTAACAATGCAAACTCAGGTAAGTGAAATTCATCATTTATCGAGTCAAAAATTGGACCGAAACTATAGTTTCAAGCAAAAACAAACTGTAAAATAACTTACATATGACTCGCCTCCCCTATTATGGTAGTGATGAACATGGGTGTTGGTAGTTGTTTATAAACTGTAATTGAAGCAATTGAGAGTCAAGCTATTCATGAATCTTGTAATGGTTGTAATGATCATTCCATGCGGCGTTTCTAATGCGAGTTTGTTTTTCTATTGCAGGGCAACAAAGAGTAAATGCACTGNGAAAAGATGAAGAAGCTCTACGCGATCTGAACGAGCAGAACAATGAATAAAGCTACTTTGTAAAGTTNTACGAGGACACTCCANAAAAGTTCACAAGCCCAGAACGAATTACTTGTCAGCTGACTATCGACTNTCCCATCG-ATCATCAACGAGTGGAATTCATTACCTCAGCACGTGGTTGAGGCTCCATCCGTCGACTCCTTCAAAAGAAAGTTGGATCAGCTGAGAGACCATCATTGCCAGGACTAACACGGGCCATCAAGCCTCCTGTCCTTTCCAAACTGAAACTGAACAATTGGCGTTGATATATTTTTCTACCCGCTTTCTGAATTTATACAGGAATTGTGTAGAACATTACTAATTGCATTGAGCAAGCTATCCATACATTTTGTTATACAACTTATGACTTCTGTCAACTAATTGAAAGGCTCAAATCTTTGTAATAATCAAGTCTATGCAGGTGAACAACTTGGCGAATTTCTTAATATGGAAGTTTATGCGGAGAAACAATTCACACATTGACGATAACTGTGTTTTGTATTGACTACTACCGCGTTTATTCATCTAATAACTTATCTAAATATAATAT]
[+] EMBL CD078626 [GAGTTGTCAGACGAGAGTTTGTTGGCATG GTCGAAAAGTCATGTCATTGAATCTGGCTTATGTGTTACATGTTGTCGCGGGTTTTTAATGTCGTTTTTTATCAGCTTATCAAAGTATTTTTCCGTCACTTGTTAATTTTTGCAATATTTATGCGTGTTACATGGCGTTTATTGCAGTCTATTGGTTGCCTGACGTATTTGGAGCTGACAACCTGAATGAATGTTTAGTCAGCCCTATTTGATAATTTGTAACAATGCAAACTCAGGTAAGTGAAATTCATCATTTATCGAGTCAAAAATTGGACCGAAACTATAGTTTCAAGCAAAAACAAACTGTAAAATAACTTACATATGACTCGCCTCCCCTATTATGGTAGTGATGAACATGGGTGTTGGTAGTTGTTTATAAACTGTAATTGAAGCAATTGAGAGTCAAGCTATTCATGAATCTTGTAATGGTTGTAATGATCATTCCATGCGGCGTTTCTAATGCGAGTTTGTTTTTCTATTGCAGGGCAACAAAGAGTAAATGCACTGNGAAAAGATGAAGAAGCTCTACGCGATCTGAACGAGCAGACCAATGAAT ]
[+] EMBL CD082022 [ TTTGTTGGCATGNGTCGAAAAGTCATGTCATTGAATCTGGCTTATGTGTTACATGTTGTCGCGGGTTTTTAATGTCGTTTTTTATCAGCTTATCAAAGTATTTTTCCGTCACTTGTTAATTTTTGCAATATTTATGCGTGTTACATGGCGTTTATTGCAGTCTATTGGTTGCCTGACGTATTTGGAGCTGACAACCTGAATGAATGTTTAGTCAGCCCTATTTGATAATTTGTAACAATGCAAACTCAGGTAAGTGAAATTCATCATTTATCGAGTCAAAAATTGGACCGAAACTATAGTTTCAAGCAAAAACAAACTGTAAAATAACTTACATATGACTCGCCTCCCCTATTATGGTAGTGATGAACATGGGTGTTGGTAGTTGTTTATAAACTGTAATTGAAGCAATTGAGAGTCAAGCTATTCATGAATCTTGTAATGGTTGTAATGATCATTCCATGCGGCGTTTCTAATGCGAGTTTGTTTTTCTATTGCAGGGCAACAAAGAGTAAATGCACTGGGAAAAGATGAAGAAGCTCTACGCGATCTGAACGAGCAGAACAATGAATAAAGCTACTTTGTAAAGTTNTACGAGGACACTCCANAAAAGTTCACAAGCCCAGAACGAATTACTTGTCAGCTGACTATCGACTNTCCCATCG ATCATC ]
[-] EMBL CD075636 [ TGAAGAAGCTCTACGCGATCTGAACGAGCAGAACAATGAATAAAGCTACTTTGTAAAGTTTTACGAGGACACTCCAAAAAAGTTCACAAGCCCAGAACGAATTACTTGTCAGCTGACTATCGACTTTCCCATCGAATCATCAACGAGTGGAATTCATTACCTCAGCACGTGGTTGAGGCTCCATCCGTCGACTCCTTCAAAAGAAAGTTGGATCAGCTGAGAGACCATCATTGCCAGGACTAACACAGGCCATCAAGCCTCCTGTCCTTTCCAAACTGAAACTGAACAATTGGCGTTGATATATTTTTCTACCCGCTTTCTGAATTTATACAGGAATTGTGTAGAACATTACTAATTGCATTGAGCAAGCTATCCATACATTTTGTTATACAACTTATGACTTCTGTCAACTAATTGAAAGGCTCAAATCTTTGTAATAATCAAGTCTATGCAGGTGAACAACTTGGCGAATTTCTTAATATGGAAGTTTATGCGGAGAAACAATTCACACATTGACGATAACTGTGTTTTGTATTGACTACTACCGCGTTTATTCATCTAATAACTTATCTAAATATAATAT]
[-] EMBL CD148882 [ AGCTGAGAGACCATCATTGCCAGGACTAACACGGGCCATCAAGCCTCCTGTCCTTTCCAAACTGAAACTGAACAATTGGCGTTGATATATTTTTCTACCCGCTTTCTGAATTTATACAGGAATTGTGTAGAACATTACT ]
[-] EMBL CD148881 [ AGCTGAGAGACCATCATTGCCAGGACTAACACGGGCCATCAAGCCTCCTGTCCTTTCCAAACTGAAAGTGAACAATTGGCGTTGATATATTTTTCTACCCGCTTTCTGAATTTATACAGGAATTGTGTAGAACATTACT ]
consensusID : consensus_9082#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 604 fasta sequence
[TGCGTAACCAAGGGTGGGCATGGTCAGAAAAGTCATGTCATTGATTCTCGCTCATACGTTACATGTTGTCGCGGATTTTTAATGTCGTTTTTTATCGGCTAATCACAGCATTTTTCCGTCACATGTTAATTTTTGTAATATTTATGCGTGTTACATGGCATTTATTTCAGTCTATTGGTTGCCCGACGTATTTTGAGCTGACAACCTGAATGAATGTTTAGTCAGCCTTATTTGGTAATTTGTAACAATACAAACTCAGGTGAGTGAAATTCGTCATTTATCGAGTCAAAAATTGGACCGAAACTATAGTTTCAGGCAAAAACAAGCTGTAAAATAATTTACATATGACTCGCCTCCCCTATTATGGTAGTGATGAACATAGGTGTTGGTAGTTGTTTATAAATTGTAATTGAAGCAATTAAGTGTCAAACTATTCATGAACCTTGTAATGGTTATAATAATCGTTTCATGCGACGTTTCTAATGCGAGTTTGTTTTTCTATTGCAGGGCAACAAAGAGTAAACGCACTGGAAAAGGATGAAGAAGCTCTACGCGATCTGAACGAGCAGAACAATGAATAAAACTATTTTGCATTTCAAAATAT]
[+] EMBL CD178092 [TGCGTAACCAAGGGTGGGCATGGTCAGAAAAGTCATGTCATTGATTCTCGCTCATACGTTACATGTTGTCGCGGATTTTTAATGTCGTTTTTTATCGGCTAATCACAGCATTTTTCCGTCACATGTTAATTTTTGTAATATTTATGCGTGTTACATGGCATTTATTTCAGTCTATTGGTTGCCCGACGTATTTTGAGCTGACAACCTGAATGAATGTTTAGTCAGCCTTATTTGGTAATTTGTAACAATACAAACTCAGGTGAGTGAAATTCGTCATTTATCGAGTCAAAAATTGGACCGAAACTATAGTTTCAGGCAAAAACAAGCTGTAAAATAATTTACATATGACTCGCCTCCCCTATTATGGTAGTGATGAACATAGGTGTTGGTAGTTGTTTATAAATTGTAATTGAAGCAATTAAGTGTCAAACTATTCATGAACCTTGTAATGGTTATAATAATCGTTTCATGCGACGTTTCTAATGCGAGTTTGTTTTTCTATTGCAGGGCAACAAAGAGTAAACGCACTGGAA ]
[+] EMBL CD134216 [ gCAGTCTATTGGTTGCCTGACGTATTTGGAGCTGACAACCTGAATGAATGTTTAGTCGGCCTTATTTGGTAATTTGTAACAATGCAAACTCAGGTAAGTGAAATTCATCATTTATCGAGTCAAAAATTGGACTGAAACTATAGTTTCAAGCAAAAACAAGCTGTAAAATACTTTACATATGACTCGCCTCCCCTATTATGGTAGTGATGAACATGGGTGTTGGTAGTTGTTTATAAACTGTAATTGAAGCAATTGAGAGTCAAACTATTCCTGAATCTTGTAATGGTTATAATAATCATTCCATGCGACGTTTCTAATGCGAGTTTGTTTTTCTATTGCAGGGCTACAAAGAGTAAACACACTGGAAAAGGATGAAGAAGCTCTACGCGATCTGAACGAGCAGAACAATGAATAAAACTATTTTGCATTTCAAAATAT]
[-] EMBL CD190425 [ TTTTGAGCTGACAACCTGAATGAATGTTTAGTCAGCCTTATTTGGTAATTTGTAACAATACAAACTCAGGTGAGTGAAATTCGTCATTTATCGAGTCAAAAATTGGACCGAAACTATAGTTTCAGGCAAAAACAAGCTGTAAAATAATTTACATATGACTCGCCTCCCCTATTATGGTAGTGATGAACATAGGTGTTGGTAGTTGTTTATAAATTGTAATTGAAGCAATTAAGTGTCAAACTATTCATGAACCTTGTAATGGTTATAATAATCGTTTCATGCGACGTTTCTAATGCGAGTTTGTTTTTCTATTGCAGGGCAACAAAGAGTAAACGCACTGG ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9082#0 GAGTTGTCAGACGAGAGTTTGTTGGCATGGTC-GAAAAGTCATGTCATTGAATCTGGCTT 59
consensus_9082#1 ----TGCGTAACCAAGG---GTGGGCATGGTCAGAAAAGTCATGTCATTGATTCTCGCTC 53
** ** * * ** ********* ****************** *** ***
consensus_9082#0 ATGTGTTACATGTTGTCGCGGGTTTTTAATGTCGTTTTTTATCAGCTTATCAAAGTATTT 119
consensus_9082#1 ATACGTTACATGTTGTCGCGGATTTTTAATGTCGTTTTTTATCGGCTAATCACAGCATTT 113
** ***************** ********************* *** **** ** ****
consensus_9082#0 TTCCGTCACTTGTTAATTTTTGCAATATTTATGCGTGTTACATGGCGTTTATTGCAGTCT 179
consensus_9082#1 TTCCGTCACATGTTAATTTTTGTAATATTTATGCGTGTTACATGGCATTTATTTCAGTCT 173
********* ************ *********************** ****** ******
consensus_9082#0 ATTGGTTGCCTGACGTATTTGGAGCTGACAACCTGAATGAATGTTTAGTCAGCCCTATTT 239
consensus_9082#1 ATTGGTTGCCCGACGTATTTTGAGCTGACAACCTGAATGAATGTTTAGTCAGCCTTATTT 233
********** ********* ********************************* *****
consensus_9082#0 GATAATTTGTAACAATGCAAACTCAGGTAAGTGAAATTCATCATTTATCGAGTCAAAAAT 299
consensus_9082#1 GGTAATTTGTAACAATACAAACTCAGGTGAGTGAAATTCGTCATTTATCGAGTCAAAAAT 293
* ************** *********** ********** ********************
consensus_9082#0 TGGACCGAAACTATAGTTTCAAGCAAAAACAAACTGTAAAATAACTTACATATGACTCGC 359
consensus_9082#1 TGGACCGAAACTATAGTTTCAGGCAAAAACAAGCTGTAAAATAATTTACATATGACTCGC 353
********************* ********** *********** ***************
consensus_9082#0 CTCCCCTATTATGGTAGTGATGAACATGGGTGTTGGTAGTTGTTTATAAACTGTAATTGA 419
consensus_9082#1 CTCCCCTATTATGGTAGTGATGAACATAGGTGTTGGTAGTTGTTTATAAATTGTAATTGA 413
*************************** ********************** *********
consensus_9082#0 AGCAATTGAGAGTCAAGCTATTCATGAATCTTGTAATGGTTGTAATGATCATTCCATGCG 479
consensus_9082#1 AGCAATTAAGTGTCAAACTATTCATGAACCTTGTAATGGTTATAATAATCGTTTCATGCG 473
******* ** ***** *********** ************ **** *** ** ******
consensus_9082#0 GCGTTTCTAATGCGAGTTTGTTTTTCTATTGCAGGGCAACAAAGAGTAAATGCACTGNGA 539
consensus_9082#1 ACGTTTCTAATGCGAGTTTGTTTTTCTATTGCAGGGCAACAAAGAGTAAACGCACTGGAA 533
************************************************* ****** *
consensus_9082#0 AAAGATGAAGAAGCTCTACGCGATCTGAACGAGCAGAACAATGAATAAAGCTACTTTGTA 599
consensus_9082#1 AAGGATGAAGAAGCTCTACGCGATCTGAACGAGCAGAACAATGAATAAAACTATTTTGCA 593
** ********************************************** *** **** *
consensus_9082#0 AAGTTNTACGAGGACACTCCANAAAAGTTCACAAGCCCAGAACGAATTACTTGTCAGCTG 659
consensus_9082#1 ---TTTCAAAATAT---------------------------------------------- 604
** * *
consensus_9082#0 ACTATCGACTNTCCCATCGATCATCAACGAGTGGAATTCATTACCTCAGCACGTGGTTGA 719
consensus_9082#1 ------------------------------------------------------------
consensus_9082#0 GGCTCCATCCGTCGACTCCTTCAAAAGAAAGTTGGATCAGCTGAGAGACCATCATTGCCA 779
consensus_9082#1 ------------------------------------------------------------
consensus_9082#0 GGACTAACACGGGCCATCAAGCCTCCTGTCCTTTCCAAACTGAAACTGAACAATTGGCGT 839
consensus_9082#1 ------------------------------------------------------------
consensus_9082#0 TGATATATTTTTCTACCCGCTTTCTGAATTTATACAGGAATTGTGTAGAACATTACTAAT 899
consensus_9082#1 ------------------------------------------------------------
consensus_9082#0 TGCATTGAGCAAGCTATCCATACATTTTGTTATACAACTTATGACTTCTGTCAACTAATT 959
consensus_9082#1 ------------------------------------------------------------
consensus_9082#0 GAAAGGCTCAAATCTTTGTAATAATCAAGTCTATGCAGGTGAACAACTTGGCGAATTTCT 1019
consensus_9082#1 ------------------------------------------------------------
consensus_9082#0 TAATATGGAAGTTTATGCGGAGAAACAATTCACACATTGACGATAACTGTGTTTTGTATT 1079
consensus_9082#1 ------------------------------------------------------------
consensus_9082#0 GACTACTACCGCGTTTATTCATCTAATAACTTATCTAAATATAATAT 1126
consensus_9082#1 -----------------------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||