These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9097#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 915 fasta sequence [TTTAGTGTGTATTGTTTCTTCTTAACAAAAATAGGTATTATGCAACAATTACTAAACAATAAACTTGGAATAGTTGGGAATAAAAAGTGGAAGTAGATATGATACAGCTTCATCAACTTTAAAACATGCAAAAAATGTTAAATAAATTTCAATCACAAAATAGAAATCTTATTTTTATCCAGCATGACAACATGTAAAGAAATTTCCCCATACTAAACTAGTTTTATCACTAGCTAAAGCATTTTTATTGTCTTCATGGCAAACACAATGTGCACTTGTATGCGCCGTAATTTGTCAATAACAAAGAAAATGTAAAAGATTTCTATAAAAGAATGGGCAAAATCTGCTTAATAATTACACGTTATCTTGATAATAAATACAATGCTGTAATGACACACAATCAACGAAAAGGAGGAAAACTAAGAGGATTAGATAGTGTGGATAGGACTTAGATGTAAATATCACAGATTAATTAATAACTAGTAAAATGTTGAATAGAAAGCTGAAGTAATTTGATTGATTTTGAACACAACTAGTTAATCTGTACAAATGGGCACCTTGCCCAATGCTCTAGATATATCAAAGTGGCAAATATCATTCAGTCCTCCACCGACACGTTC-ACCGAAGAAGTCAAACACATATAAATTTGGCATTCTAAGTGAAAGATCTTCAAGTATATTATCAACAACGTGATTACATTGGGTCAAATTTAATATCACTAAATGAGGTACTTTTAACGGGATATCAGCAAATGCTTTTCCTTGAATGACGGAATTCCCAATAAGGCTTAGCTGGCGTAAAGAACTGCATATTTCAATTATTTGGTTCACACCAATATCAGTAACTTCCCAACACCAGTTTAAGGTAAGAAAGCGTAAGCGACTACCGCAACAGCTACAAGTCCTCGTGCCGAAT] [+] EMBL CD074453 [TTTAGTGTGTATTGTTTCTTCTTAACAAAAATAGGTATTATGCAACAATTACTAAACAATAAACTTGGAATAGTTGGGAATAAAAAGTGGAAGTAGATATGATACAGCTTCATCAACTTTAAAACATGCAAAAAATGTTAAATAAATTTCAATCACAAAATAGAAATCTTATTTTTATCCAGCATGACAACATGTAAAGAAATTTCCCCATACTAAACTAGTTTTATCACTAGCTAAAGCATTTTTATTGTCTTCATGGCAAACACAATGTGCACTTGTATGCGCCGTAATTTGTCAATAACAAAGAAAATGTAAAAGATTTCTATAAAAGAATGGGCAAAATCTGCTTAATAATTACACGTTATCTTGATAATAAATACAATGCTGTAATGACACACAATCAACGAAAAGGAGGAAAACTAAGAGGATTAGATAGTGTGGATAGGACTTAGATGTAAATATCACAGATTAATTAATAACTAGTAAAATGTTGAATAGAAAGCTGAAGTAATTTGATTGATTTTGAACACAACTAGTTAATCTGTACAAATGGGCACCTTGCCCAATGCTCTAGATATATCAAAGTGGCAAATATCATTCAGTCCTCCACCGACACGTTC ACCGAAGAAGTC AACACATATAAATTTGGCATTCTAAGTGAAAGATCTTC AGTATATTATCAAC ACGTGATTAC ] [+] EMBL CD074375 [TTTAGTGTGTATTGTTTCTTCTTAACAAAAATAGGTATTATGCAACAATTACTAAACAATAAACTTGGAATAGTTGGGAATAAAAAGTGGAAGTAGATATGATACAGCTTCATCAACTTTAAAACATGCAAAAAATGTTAAATAAATTTCAATCACAAAATAGAAATCTTATTTTTATCCAGCATGACAACATGTAAAGAAATTTCCCCATACTAAACTAGTTTTATCACTAGCTAAAGCATTTTTATTGTCTTCATGGCAAACACAATGTGCACTTGTATGCGCCGTAATTTGTCAATAACAAAGAAAATGTAAAAGATTTCTATAAAAGAATGGGCAAAATCTGCTTAATAATTACACGTTATCTTGATAATAAATACAATGCTGTAATGACACACAATCAACGAAAAGGAGGAAAACTAAGAGGATTAGATAGTGTGGATAGGACTTAGATGTAAATATCACAGATTAATTAATAACTAGTAAAATGTTGAATAGAAAGCTGAAGTAATTTGATTGATTTTGAACACAACTAGTTAATCTGTACAAATGGGCACCTTGCCCAATGCTCTAGATATATCAAAGTGGCAAATATCATTCAGTCCTCCACCGACACGTTC ACCGAAGAAGTCAAACACATATAAATTTGGCATTCTAA ] [+] EMBL CD074272 [TTTAGTGTGTATTGTTTCTTCTTAACAAAAATAGGTATTATGCAACAATTACTAAACAATAAACTTGGAATAGTTGGGAATAAAAAGTGGAAGTAGATATGATACAGCTTCATCAACTTTAAAACATGCAAAAAATGTTAAATAAATTTCAATCACAAAATAGAAATCTTATTTTTATCCAGCATGACAACATGTAAAGAAATTTCCCCATACTAAACTAGTTTTATCACTAGCTAAAGCATTTTTATTGTCTTCATGGCAAACACAATGTGCACTTGTATGCGCCGTAATTTGTCAATAACAAAGAAAATGTAAAAGATTTCTATAAAAGAATGGGCAAAATCTGCTTAATAATTACACGTTATCTTGATAATAAATACAATGCTGTAATGACACACAATCAACGAAAAGGAGGAAAACTAAGAGGATTAGATAGTGTGGATAGGACTTAGATGTAAATATCACAGATTAATTAATAACTAGTAAAATGTTGAATAGAAAGCTGAAGTAATTTGATTGATTTTGAACACAACTAGTTAATCTGTACAAATGGGCACCTTGCCCAATGCTCTAGATATATCAAAGTGGCAAATATCATTCAGTCCTCCACCGACACGTTCNACCGAAGAAGTCAAACACATATAAATTTGGCA ] [-] EMBL CD080356 [ TATGGTCTTCATGGCAAACACAATGTGCACTTGTATGCGCCGTAATTTGTCAATAACAAAGANAATGTAAAAGATTTCTATAAAAGAATGGGCAAAATCTGCTTAATAATTACACGTTATCTTGATAATAAATACAATGCTGTAATGACACACAATCAACGAAAAGGAGGAAAACTAAGAGGATTAGATAGTGTGGATAGGACTTAGATGTAAATATCACAGATTAATTAATAACTAGTAAAATGTTGAATAGAAAGCTGAAGTAATTTGATTGATTTTGAACACAACTAGTTAATCTGTACAAATGGGCACCTTGCCCAATGCTCTAGATATATCAAAGTGGCAAATATCATTCAGTCCTCCACCGACACGTTC ACCGAAGAAGTCAAACACATATAAATTTGGCATTCTAAGTGAAAGATCTTCAAGTATATTATCAACAACGTGATTACATTGGGTCAAATTTAATATCACTAAATGAGGTACTTTTAACGGGATATCAGCAAATGCTTTTCCTTGAATGACGGAATTCCCAATAAGGCTTAGCTGGCGTAAAGAACTGCATATTTCAATTATTTGGTTCACACCAATATCAGTAACTTCCCAACACCAGTTTAAGGTAAGAAAGCGTAAGCGACTACCGCAACAGCTACAAGTCCTCGTGCCGAAT] [-] EMBL CD080464 [ TGTATGCGCCGT ATTGGTCAATAACAAAGANAATGTAAAAGATTTCTATAAAAGAATGGGCANAATCTGCTTAATAATTACACGTTATCTTGATAATAAATACAATGCTGTAATGACACACAATCAACGAAAAGGAGGAAAACTAAGAGGATTAGATAGTGTGGATAGGACTTAGATGTAAATATCACAGATTAATTAATAACTAGTAAAATGTTGAATAGAAAGCTGAAGTAATTTGATTGATTTTGAACACAACTAGTTAATCTGTACAAATGGGCACCTTGCCCAATGCTCTAGATATATCAAAGTGGCAAATATCATTCAGTCCTCCACCGACACGTTC ACCGAAGAAGTCAAACACATATAAATTTGGCATTCTAAGTGAAAGATCTTCAAGTATATTATCAACAACGTGATTACATTGGGTCAAATTTAATATCACTAAATGAGGTACTTTTAACGGGATATCAGCAAATGCTTTTCCTTGAATGACGGAATTCCCAATAAGGCTTAGCTGGCGTAAAGAACTGCATATTTCAATTATTTGGTTCACACCAATATCAGTAACTTCCCAACACCAGTTTAAGGTAAGAAAGCGTAAGCGACTACCGCAACAGCTACAAat ] [+] EMBL CD141178 [ TGTGGATAGGACTTAGATGTAAATATCACAGATTAATTAATAACTAGTAAAATGTTGAATAGAAAGCTGAAGTAATTTGATTGATTTTGAACACAACTAGTTAATCTGTACAAATGGGCACCTTGCCCAATGCTCTAGATATATCAAAGTGGCAAATATCATTCAGTCCTCCACCGACACGTTC ACCGAAGAAGTCAAACACATATAAATTTGGCATTCTAAGTGAAAGATCTTCAAGTATATTATCAACAACGTGATTACATTGNGTCAAATTTAATATCACTAAATGAGGTACTTTTAACGNGATATCAGCAAATGCTTTTCCT ] consensusID : consensus_9097#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 594 fasta sequence [TATCACTAAATGAGGTACTTTTACGGGGATATCAGCAAATGCTTTTCCTTGAATGACGGAATTCCCAATAAGGCTTAGCTGGCGTAAAGAACTGCATATTTCAATTATNTGGTTCACACCAATATCAGTAACTTCCCAACACCAGTTTAAGGTAAGANAGCGTAAGCGACTACCGCAACAGCTACAAATATCCATCACTACTGAATCATTCAACCCAGGTGCTTCACTTAAATCTAAGTGTTCAAGATACCTCAACTTTAATTGATGGTCCAAATGACTTAAACTTTTGGAGACAAATAATGAGCTTAATCCGGTAGGACTGACTTGATGAGTTTTTCGCAATGTAAGAGCGTCAAGATTTGAAAGGTTAGCTATGGATTTAGCTGCTTCATATTCAACATGATCGCAAAAGATAATCCACAGTTGTTGAATTCCGATTACATGGTGTTCAATTTCTGGATATATAAGATCTTCAAAGTCTGGTGTCCGTTTTGTAGCACATTCCAATCGAACAATAAATTCATTTAATCCGGAATTTGAAAGTTCAAAACCATATAACCATATTGCATCAAGGTTACCATTACGTACAGCTTC] [-] EMBL CD200751 [TATCACTAAATGAGGTACTTTTACGGGGATATCAGCAAATGCTTTTCCTTGAATGACGGAATTCCCAATAAGGCTTAGCTGGCGTAAAGAACTGCATATTTCAATTATNTGGTTCACACCAATATCAGTAACTTCCCAACACCAGTTTAAGGTAAGANAGCGTAAGCGACTACCGCAACAGCTACAAATATCCATCACTACTGAATCATTCAACCCAGGTGCTTCACTTAAATCTAAGTGTTCAAGATACCTCAACTTTAATTGATGGTCCAAATGACTTAAACTTTTGGAGACAAATAATGAGCTTAATCCGGTAGGACTGACTTGATGAGTTTTTCGCAATGTAAGAGCGTCAAGATTTGAAAGGTTAGCTATGGATTTAGCTGCTTCATATTCAACATGATCGCAAAAGATAATCCACAGTTGTTGAATTCCGATTACATGGTGTTCAATTTCTGGATATATAAGATCTTCAAAGTCTGGTGTCCGTTTTGTAGCACATTCCAATCGAACAATAAATTCATTTAATCCGGAATTTGAAAGTTCAAAACCATATAACCATATTGCATCAAGGTTACCATTACGTACAGCTTC] [+] EMBL CD147140 [ TGCTTTTCCTTGAATGACGGAATTCCCAATAAGGCTTATCTGGCGTAAAGAACTGCATATTTCAATTATTTGGTTCACACCAATATCAGTAACTTCCCAACACCAGTTTAAGGTAAGAAAGCGTAAGCGACTACCGCAACAGCTACAAATATCCATCACTACTGAATCATTCAAACCAGGTGCTTCACTTAAATTTAAGTGGTCAAGATACCTCAACTTTAATTGATGGTCCAAATGACTTAAACTTTTGGAGACAAATAATGAGCTTAAACCGGTAGGACTGACTTGATGAGTTTTTCGCAATGTAGGAGCGACAAGATTTGAAAGGTTAGCTATGGATTTAACTGCTTCATCTTCAACATGATCACAAAAGCTAATCCACAGTTGTTGAATTCCGATTACATGGTGTTCAATTTCTGGATTTATAAGATCTTCAAATTCTGGTGTCCGTTNTGTAGCACATTC ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9097#0 TTTAGTGTGTATTGTTTCTTCTTAACAAAAATAGGTATTATGCAACAATTACTAAACAAT 60 consensus_9097#1 ------------------------------------------------------------ consensus_9097#0 AAACTTGGAATAGTTGGGAATAAAAAGTGGAAGTAGATATGATACAGCTTCATCAACTTT 120 consensus_9097#1 ------------------------------------------------------------ consensus_9097#0 AAAACATGCAAAAAATGTTAAATAAATTTCAATCACAAAATAGAAATCTTATTTTTATCC 180 consensus_9097#1 ------------------------------------------------------------ consensus_9097#0 AGCATGACAACATGTAAAGAAATTTCCCCATACTAAACTAGTTTTATCACTAGCTAAAGC 240 consensus_9097#1 --------------------------------------------TATCACTAAATGAGGT 16 ******** * * * consensus_9097#0 ATTTTTATTGTCTTCATGGCAAACACAATGTGCACTTGTATGCGCCGTAATTTGTCAATA 300 consensus_9097#1 ACTTTTACGGGGATATCAGCAAATGCT---TTTCCTTGAATGA--CGGAATTC-CCAATA 70 * ***** * * ***** * * **** *** ** **** ***** consensus_9097#0 A--CAAAGAAAATGTAAAAGATTTCTATAAAAGAATGGGCAAAATCTGCTTAATAATTAC 358 consensus_9097#1 AGGCTTAGCTGGCGTAAAGAACTGC-ATATTTCAATTATNTGGTTCACACCAATATCAGT 129 * * ** ***** * * * *** *** ** **** consensus_9097#0 ACGTTATCTTGATAATAAATACAATGCTGTAATGACACACAATCAACGAAAAGGAGGAAA 418 consensus_9097#1 AACTT--CCCAACACCAGTTTAAGGTAAGANAGCGTAAGCGACTACCGCAACAGCTACAA 187 * ** * * * * * * * * * * * * ** ** * ** consensus_9097#0 ACTAAGAGGATTAGATAGTGTGGATAGGACTTAGATGTAAATATCACAGATTAATTAATA 478 consensus_9097#1 ATATCCATCACTACTGAATC---ATTCAACCCAGGTGCTTCACTTAAATCTAAGTGTTCA 244 * * * ** * * ** ** ** ** * * * * * * * consensus_9097#0 ACTAGTAAAATGTTGAATAGAAAGCTGAAGTAATTTGATTGATTTTGAACACAACTAGTT 538 consensus_9097#1 AGATACCTCAACTTTAATTGATGGTCCAAATGACTTAAAC--TTTTGGAGACAAATAATG 302 * * ** *** ** * ** * * ** * ***** * **** ** * consensus_9097#0 AATCTGTACAAATGGGCACCTTGCCCAATGCTCTAGATATATCAAAGTGGCAAATATCAT 598 consensus_9097#1 AGCTTAATCCGGTAGGA--CTGACTTGATG-----AGTTTTTCGCAATG--TAAGAGCGT 353 * * * * ** ** * *** * * ** * ** ** * * * consensus_9097#0 TCAGTCCTCCACCGACACGTTCACCGAAGAAGTCAAACACATATAAATTTGGCATTCTAA 658 consensus_9097#1 CAAGATTT-----GAAAGGTTAGCTATGGA--TTTAGCTGCTTCATATTCAACATGATC- 405 ** * ** * *** * ** * * * * * *** *** * consensus_9097#0 GTGAAAGATCTTCAAGTATATTATCAACAACGTGATTACATTGGGTCAAATTTAATATCA 718 consensus_9097#1 GCAAAAGATAATCCACAGT--TGTTGA-ATTCCGATTACATGGTGTTCAATTT---CTGG 459 * ****** ** * * * * * * ******** * ** ***** * consensus_9097#0 CTAAATGAGGTACTTTTAACGGGATATCAGCA----AATGCTTTTCC-TTGAATGACGGA 773 consensus_9097#1 ATATATAAGATCTTCAAAGTCTGGTGTCCGTTTTGTAGCACATTCCAATCGAACAATAAA 519 ** ** ** * * * * * ** * * * ** * * *** * * consensus_9097#0 ATT-CCCAATAAGGCTTAGCTGGCGTAAAGAACTGCATATTTCAATTATTTGGTTCACAC 832 consensus_9097#1 TTCATTTAATCCGGAATT-TGAAAGTTCAAAACCATATAACCATATTGCATCAAGGTTAC 578 * *** ** * ** * *** *** *** * ** consensus_9097#0 CAATATCAGTAACTTCCCAACACCAGTTTAAGGTAAGAAAGCGTAAGCGACTACCGCAAC 892 consensus_9097#1 CATTACGTACAGCTTC-------------------------------------------- 594 ** ** * **** consensus_9097#0 AGCTACAAGTCCTCGTGCCGAAT 915 consensus_9097#1 ----------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||