cluster # 9108

These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 9108 cluster # 9108 Sequences # 8 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9108#0 length = 873 sequences # 5

consensus_9108#1 length = 557 sequences # 1
consensus_9108#2 length = 327 sequences # 2

consensusID : consensus_9108#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 873
fasta sequence

                              [GAGGCGATCATTGTGAATCACCTACAAGTCGGATTGTAACTATATCAGATTTAGCATTTTTCATTACATTATGCAGTTTAGCTACATTTGAACGTACTGAATTAGCAACCTTAGTTCTTGGGAATGCATCGTTGAGGTTACTTTTGGAAGCAGAACCTGCTTGTCGTGACATATTACAGTCGTTCCATCAAGCAGATTACGCGTCTTGTTTGGGGCGATTAAATAAACTACGAAATGTTTTACGGTTAGATATATTTTTGTCTGATCATGTATCTGCATTATTCCGAGAGATTCGATCACGTGCACTTTGTCAGTATTTCAGTCCATATTCATCAGCCGACTTAAATTTGATGGCTAAAGCATTCGATACAAATGTAGCTAGTCTAGAAAATGAATTAGCAGTACTTATTCAAGATGGAAGTATTAAAGCTCGTATTGATTCACATAAACAGCTTCTTCGTGTTCTTGACGTGGATCAGCGATGTCTAACGTTTGCTCGGGCTGTACGACTTGTTGATGAGTATAAAAATCGTACACATTCACTGATACTTCGAATGGCATTAGCACGTCAAAAACTTACTGTTAAGTCTACCAGAGATGATATTGATCCTATGTATCATTACATGTCATAAAACAATCAATCTTTGGATTAATAATAACAATGCTTATAAAATAGTCATAGTAGTATGGCATTATGGAGCTATTCAAATTTCTGTGATGGGACAAAACTCTGAGAACTTTGAATTAATGAAAGAGAACACACACCGACCTGCTTTTACAACAGATTTACAATATCCTCCATATTTGATTAGGACTGTAGAAATGCTGTCCTGTTTTTCTCACATAGAACTGTTTATTTACACCTAAACACAA]

[+] EMBL CD083288             [GAGGCGATCATTGTGAATCACCTACAAGTCGGATTGTAACTATATCAGATTTAGCATTTTTCATTACATTATGCAGTTTAGCTACATTTGAACGTACTGAATTAGCAACCTTAGTTCTTGGGAATGCATCGTTGAGGTTACTTTTGGAAGCAGAACCTGCTTGTCGTGACATATTACAGTCGTTCCATCAAGCAGATTACGCGTCTTGTTTGGGGCGATTAAATAAACTACGAAATGTTTTACGGTTAGATATATTTTTGTCTGATCATGTATCTGCATTATTCCGAGAGATTCGATCACGTGCACTTTGTCAGTATTTCAGTCCATATTCATCAGCCGACTTAAATTTGATGGCTAAAGCATTCGATACAAATGTAGCTAGTCTAGAAAATGAATTAGCAGTACTTATTCAAGATGGAAGTATTAAAGCTCGTATTGATTCACATAAACAGCTTCTTCGTGTTCTTGACGTGGATCAGCGATGTCTAACGTTTGCTCGGGCTGTACGACTTGTTGATGAGTATAAAAATCGTACACATTCACTGATACTTCGAATGGCATTAGCACGTCAAAAACTTACTGTTAAGTCTACCAGAGATGATATTGATCCTATGTATCATTACATGTCATAAAACAATCA                                                                                                                                                                                                                                         ]
[+] EMBL CD089959             [              GAATCACCTACAAGTCGGATTGTAACTATATCAGATTTAGCATTTTTCATTACATTATGCAGTTTAGCTACATTTGAACGTACTGAATTAGCAACCTTAGTTCTTGGGAATGCATCGTTGAGGTTACTTTTGGAAGCAGAACCTGCTTGTCGTGACATATTACAGTCGTTCCATCAAGCAGATTACGCGTCTTGTTTGGGGCGATTAAATAAACTACGAAATGTTTTACGGTTAGATATATTTTTGTCTGATCATGTATCTGCATTATTCCGAGAGATTCGATCACGTGCACTTTGTCAGTATTTCAGTCCATATTCATCAGCCGACTTAAATTTGATGGCTAAAGCATTCGATACAAATGTAGCTAGTCTAGAAAATGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL CD193923             [                                                                                                                                                                                                  GATTACGCGTCTTGTTTGGGGCGATTAAATAAACTACGAAATGTTTTACGGTTAGATATATTTTTGTCTGATCATGTATCTGCATTATTCCGAGAGATTCGATCACGTGCACTTTGTCAGTATTTCAGTCCATATTCATCAGCCGACTTAAATTTGATGGCTAAAGCATTCGATACAAATGTAGCTAGTCTAGAAAATGAATTAGCAGTACTTATTCAAGATGGAAGTATTAAAGCTCGTATTGATTCACATAA                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL CD141496             [                                                                                                                                                                                                                                                                                                            GTGCACTTTGTCAGTATTTCAGTCCATATTCATCAGCCGACTTAAATTTGATGGCTAAAGCATTCGATACAAATGTAGCTAGTCTAGAAAATGAATTAGCAGTACTTATTCAAGATGGAAGTATTAAAGCTCGTATTGATTCACATATACAGCTTCTTCGTGTTCTTGACGTGGATCAGCGATGTCTAACGTTTGCTCGGGCTGTACGACTTGTTGATGAGTATAANAATCGTACACATTCACTGATACTTCGAATGGCATTAGCACGTCANAAACTTACTGTTAAGTCTACCAGAGATGATATTGATCCTATGTATCATTACATGTCATAAAACAtc                                                                                                                                                                                                                                           ]
[+] EMBL CD083404             [                                                                                                                                                                                                                                                                                                                                                              ATGGCTAAAGCATTCGAT C AATGTAGCTAGTCTAGAAAATGAATTAGCAGTACTTATTCAAGATGGAAGTATTAAAGCTCGTATTGATTCACATAAACAGCTTCTTCGTGTTCTTGACGTGGATCAGCGATGTCTAACGTTTGCTCGGGCTGTACGACTTGTTGATGAGTATAAAAATCGTACACATTCACTGATACTTCGAATGGCATTAGCACGTCAAAAACTTACTGTTAAGTCTACCAGAGATGATATTGATCCTATGTATCATTACATGTCATAAAACAATCAATCTTTGGATTAATAATAACAATGCTTATAAAATAGTCATAGTAGTATGGCATTATGGAGCTATTCAAATTTCTGTGATGGGACAAAACTCTGAGAACTTTGAATTAATGAAAGAGAACACACACCGACCTGCTTTTACAACAGATTTACAATATCCTCCATATTTGATTAGGACTGTAGAAATGCTGTCCTGTTTTTCTCACATAGAACTGTTTATTTACACCTAAACACAA]




>consensus_9108#0
GAGGCGATCATTGTGAATCACCTACAAGTCGGATTGTAACTATATCAGATTTAGCATTTT
TCATTACATTATGCAGTTTAGCTACATTTGAACGTACTGAATTAGCAACCTTAGTTCTTG
GGAATGCATCGTTGAGGTTACTTTTGGAAGCAGAACCTGCTTGTCGTGACATATTACAGT
CGTTCCATCAAGCAGATTACGCGTCTTGTTTGGGGCGATTAAATAAACTACGAAATGTTT
TACGGTTAGATATATTTTTGTCTGATCATGTATCTGCATTATTCCGAGAGATTCGATCAC
GTGCACTTTGTCAGTATTTCAGTCCATATTCATCAGCCGACTTAAATTTGATGGCTAAAG
CATTCGATACAAATGTAGCTAGTCTAGAAAATGAATTAGCAGTACTTATTCAAGATGGAA
GTATTAAAGCTCGTATTGATTCACATAAACAGCTTCTTCGTGTTCTTGACGTGGATCAGC
GATGTCTAACGTTTGCTCGGGCTGTACGACTTGTTGATGAGTATAAAAATCGTACACATT
CACTGATACTTCGAATGGCATTAGCACGTCAAAAACTTACTGTTAAGTCTACCAGAGATG
ATATTGATCCTATGTATCATTACATGTCATAAAACAATCAATCTTTGGATTAATAATAAC
AATGCTTATAAAATAGTCATAGTAGTATGGCATTATGGAGCTATTCAAATTTCTGTGATG
GGACAAAACTCTGAGAACTTTGAATTAATGAAAGAGAACACACACCGACCTGCTTTTACA
ACAGATTTACAATATCCTCCATATTTGATTAGGACTGTAGAAATGCTGTCCTGTTTTTCT
CACATAGAACTGTTTATTTACACCTAAACACAA

consensusID : consensus_9108#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 557
fasta sequence

                              [CTCGCGGCCAGAAATTCGGCACGAGGTTAGCACGTCAAAAACTTACTGTTAAGTCTACCAGAGATGATATTGATCCTATGTATCATTACATGTCATAAAACAATCAATCTTTGGATTAATAATAACAATGCTTATAAAATAGTCATAGTAGTATGGCATTATGGAGCTATTCAAATTTCTGTGATGGGACAAAACTCTGAGAACTTTGAATTAATGAAAGAGAACACACACCGACCTGCTTTTACAACAGATTTACAATATCCTCCATATTTGATTAGGACTGTAGAAATGCTGTCCTGTTTTTCTCACATAGAACTGTTAATNTACACCTAAACACANATGTNTACTGCTTCTACCATAAAGTCGTCCTCGNTACTTCGATGACACATGGCTAATTCATTTGTACTTNATTTTCACATTGATATTTTTAAAGCTGTCACTTACCCCTCTCGCACAATCTGTGGTCCCAGTTCACGTCACAACTATAATGACCCACTCTGCACCAGTCGAATCTATCTATTAAGCTATACGNTAGGTATTGCGAATCATTAGGTATA]

[+] EMBL CD077764             [CTCGCGGCCAGAAATTCGGCACGAGGTTAGCACGTCAAAAACTTACTGTTAAGTCTACCAGAGATGATATTGATCCTATGTATCATTACATGTCATAAAACAATCAATCTTTGGATTAATAATAACAATGCTTATAAAATAGTCATAGTAGTATGGCATTATGGAGCTATTCAAATTTCTGTGATGGGACAAAACTCTGAGAACTTTGAATTAATGAAAGAGAACACACACCGACCTGCTTTTACAACAGATTTACAATATCCTCCATATTTGATTAGGACTGTAGAAATGCTGTCCTGTTTTTCTCACATAGAACTGTTAATNTACACCTAAACACANATGTNTACTGCTTCTACCATAAAGTCGTCCTCGNTACTTCGATGACACATGGCTAATTCATTTGTACTTNATTTTCACATTGATATTTTTAAAGCTGTCACTTACCCCTCTCGCACAATCTGTGGTCCCAGTTCACGTCACAACTATAATGACCCACTCTGCACCAGTCGAATCTATCTATTAAGCTATACGNTAGGTATTGCGAATCATTAGGTATA]




>consensus_9108#1
CTCGCGGCCAGAAATTCGGCACGAGGTTAGCACGTCAAAAACTTACTGTTAAGTCTACCA
GAGATGATATTGATCCTATGTATCATTACATGTCATAAAACAATCAATCTTTGGATTAAT
AATAACAATGCTTATAAAATAGTCATAGTAGTATGGCATTATGGAGCTATTCAAATTTCT
GTGATGGGACAAAACTCTGAGAACTTTGAATTAATGAAAGAGAACACACACCGACCTGCT
TTTACAACAGATTTACAATATCCTCCATATTTGATTAGGACTGTAGAAATGCTGTCCTGT
TTTTCTCACATAGAACTGTTAATNTACACCTAAACACANATGTNTACTGCTTCTACCATA
AAGTCGTCCTCGNTACTTCGATGACACATGGCTAATTCATTTGTACTTNATTTTCACATT
GATATTTTTAAAGCTGTCACTTACCCCTCTCGCACAATCTGTGGTCCCAGTTCACGTCAC
AACTATAATGACCCACTCTGCACCAGTCGAATCTATCTATTAAGCTATACGNTAGGTATT
GCGAATCATTAGGTATA

consensusID : consensus_9108#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 327
fasta sequence

                              [ATAAACAGCTTCTTCGTGTTCTTGACGTGGATCAGCGATGTCTAACGTTTGCTCGGGCTGTACGACTTGTTGATGAGTATAAAAATCGTACACATTCACTGATACTTCGAATGGCATTAGCACGTCAAAAACTTACTGTTAAGCTGTCAACTTACCCCCTCTCGCCACAATCCTGTTGGTCCCCAGTTTTCACGTTCACAAACTATCACATGTACACAACTCCTGCACACCAAGTCGGAATACTATCCTTATTTAAAAGCTTATAATCGGTATAGTGTTATTGGTCGATATTTCATTTTAGGTTTTATTATTGTATAAAATGTTGGT]

[-] EMBL AI068107             [ATAAACAGCTTCTTCGTGTTCTTGACGTGGATCAGCGATGTCTAACGTTTGCTCGGGCTGTACGACTTGTTGATGAGTATAAAAATCGTACACATTCACTGATACTTCGAATGGCATTAGCACGTCAAAAACTTACTGTTAAGCTGTCAACTTACCCCCTCTCGCCACAATCCTGTTGGTCCCCAGTTTTCACGTTCACAAACTATCACATGTACACAACTCCTGCACACCAAGTCGGAATACTATCCTTATTTAAAAGCTTATAATCGGTATAGTGTTATTGGTCGATATTTCATTTTAGGTTTTATTATTGTATAAAATGTTGGT]
[-] EMBL CD076859             [                                                                                                                                               CTGTCAACTTACCCCCTCTCGCCACAATCCTGTTGGTCCCCAGTTTTCACGTTCACAAACTATCACATGTACACAACTCCTGCACACCAAGTCGGAATACTATCCTTATTTAAAAGCTTATAATCGGTATAGTGTTATTGGTCGATATTTCATTTTAGGTTTTATTATTGTATAAAA       ]




>consensus_9108#2
ATAAACAGCTTCTTCGTGTTCTTGACGTGGATCAGCGATGTCTAACGTTTGCTCGGGCTG
TACGACTTGTTGATGAGTATAAAAATCGTACACATTCACTGATACTTCGAATGGCATTAG
CACGTCAAAAACTTACTGTTAAGCTGTCAACTTACCCCCTCTCGCCACAATCCTGTTGGT
CCCCAGTTTTCACGTTCACAAACTATCACATGTACACAACTCCTGCACACCAAGTCGGAA
TACTATCCTTATTTAAAAGCTTATAATCGGTATAGTGTTATTGGTCGATATTTCATTTTA
GGTTTTATTATTGTATAAAATGTTGGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9108#0      GAGGCGATCATTGTGAATCACCTACAAGTCGGATTGTAACTATATCAGATTTAGCATTTT 60
consensus_9108#1      ------------------------------------------------------------
consensus_9108#2      ------------------------------------------------------------
                                                                                  

consensus_9108#0      TCATTACATTATGCAGTTTAGCTACATTTGAACGTACTGAATTAGCAACCTTAGTTCTTG 120
consensus_9108#1      ------------------------------------------------------------
consensus_9108#2      ------------------------------------------------------------
                                                                                  

consensus_9108#0      GGAATGCATCGTTGAGGTTACTTTTGGAAGCAGAACCTGCTTGTCGTGACATATTACAGT 180
consensus_9108#1      ------------------------------------------------------------
consensus_9108#2      ------------------------------------------------------------
                                                                                  

consensus_9108#0      CGTTCCATCAAGCAGATTACGCGTCTTGTTTGGGGCGATTAAATAAACTACGAAATGTTT 240
consensus_9108#1      ------------------------------------------------------------
consensus_9108#2      ------------------------------------------------------------
                                                                                  

consensus_9108#0      TACGGTTAGATATATTTTTGTCTGATCATGTATCTGCATTATTCCGAGAGATTCGATCAC 300
consensus_9108#1      ------------------------------------------------------------
consensus_9108#2      ------------------------------------------------------------
                                                                                  

consensus_9108#0      GTGCACTTTGTCAGTATTTCAGTCCATATTCATCAGCCGACTTAAATTTGATGGCTAAAG 360
consensus_9108#1      ------------------------------------------------------------
consensus_9108#2      ------------------------------------------------------------
                                                                                  

consensus_9108#0      CATTCGATACAAATGTAGCTAGTCTAGAAAATGAATTAGCAGTACTTATTCAAGATGGAA 420
consensus_9108#1      ------------------------------------------------------------
consensus_9108#2      ------------------------------------------------------------
                                                                                  

consensus_9108#0      GTATTAAAGCTCGTATTGATTCACATAAACAGCTTCTTCGTGTTCTTGACGTGGATCAGC 480
consensus_9108#1      ------------------------------------------------------------
consensus_9108#2      ------------------------------------------------------------
                                                                                  

consensus_9108#0      GATGTCTAACGTTTGCTCGGGCTGTACGACTTGTTGATGAGTATAAAAATCGTACACATT 540
consensus_9108#1      ------------------------------------------------------CTCGCG 6
consensus_9108#2      ------------------------------------------------------------
                                                                                  

consensus_9108#0      CACTGATACTTCGAATGGCATTAGCACGTCAAAAACTTACTGTTAAGTCTACCAGAGATG 600
consensus_9108#1      GCCAGAAATTCGGCACGAGGTTAGCACGTCAAAAACTTACTGTTAAGTCTACCAGAGATG 66
consensus_9108#2      ---------------ATAAACAGCTTCTTCGTGTTCTTGACGT-GGATCAGCGATGTCTA 44
                                                * **     ***   **    **  * *    * 

consensus_9108#0      ATATTGATCCTATGTATCATTACATGTCATAAAACAATCAATCTTTGGATTAATAATAAC 660
consensus_9108#1      ATATTGATCCTATGTATCATTACATGTCATAAAACAATCAATCTTTGGATTAATAATAAC 126
consensus_9108#2      ACGTTTGCTCGGGCTGT-ACGACTTGTTGATGAGTATAAAAATCGTACACATTCACTGAT 103
                      *  **    *    * * *  ** ***     *  *   **    *  *     * * * 

consensus_9108#0      AATGCTTATAAAATAGTCATAGTAGTATGGCATTATGGAGCTATTCAAAT-TTCTGTGAT 719
consensus_9108#1      AATGCTTATAAAATAGTCATAGTAGTATGGCATTATGGAGCTATTCAAAT-TTCTGTGAT 185
consensus_9108#2      ACTTCGAATGGCATTAGCACGTCAAAAACTTACTGTTAAGCTGTCAACTTACCCCCTCTC 163
                      * * *  **   **   **    *  *    * * *  **** *  *  *   *  *   

consensus_9108#0      GGGACAAAACTCTGAGAACTTTGAATTAATGAAAGAGAACA--CACACCGAC-CTGCTTT 776
consensus_9108#1      GGGACAAAACTCTGAGAACTTTGAATTAATGAAAGAGAACA--CACACCGAC-CTGCTTT 242
consensus_9108#2      GCCACAATCCTGTTGGTCCCCAGTTTTCACGTTCACAAACTATCACATGTACACAACTCC 223
                      *  ****  ** *  *  *   *  ** * *      ***   ****   ** *  **  

consensus_9108#0      TACA-ACAGATTTACAATATCCTCCATATTTGATTAGGACTGTAGAAATGCTGTCCTGTT 835
consensus_9108#1      TACA-ACAGATTTACAATATCCTCCATATTTGATTAGGACTGTAGAAATGCTGTCCTGTT 301
consensus_9108#2      TGCACACCAAGTCGGAATACTATCCTTATT----TAAAAGCTTATAATCGGTATAGTGTT 279
                      * ** **  * *   ****   *** ****    **  *   ** **  * * *  ****

consensus_9108#0      TTTCTCACATAGAACTGTTTATTTACACCTAAACACAA---------------------- 873
consensus_9108#1      TTTCTCACATAGAACTGTTAATNTACACCTAAACACANATGTNTACTGCTTCTACCATAA 361
consensus_9108#2      ATTG----GTCGATATTTCATTTTAGGTTTTATTAT-TGTATAAAATGTTGGT------- 327
                       **      * **  * *   * **    * *  *                         

consensus_9108#0      ------------------------------------------------------------
consensus_9108#1      AGTCGTCCTCGNTACTTCGATGACACATGGCTAATTCATTTGTACTTNATTTTCACATTG 421
consensus_9108#2      ------------------------------------------------------------
                                                                                  

consensus_9108#0      ------------------------------------------------------------
consensus_9108#1      ATATTTTTAAAGCTGTCACTTACCCCTCTCGCACAATCTGTGGTCCCAGTTCACGTCACA 481
consensus_9108#2      ------------------------------------------------------------
                                                                                  

consensus_9108#0      ------------------------------------------------------------
consensus_9108#1      ACTATAATGACCCACTCTGCACCAGTCGAATCTATCTATTAAGCTATACGNTAGGTATTG 541
consensus_9108#2      ------------------------------------------------------------
                                                                                  

consensus_9108#0      ----------------
consensus_9108#1      CGAATCATTAGGTATA 557
consensus_9108#2      ----------------