These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9111#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 544 fasta sequence [CAAAATCTTGTAAACATGTTGTTTCTATTTGATGGTACGATGTGGTCTGTTTGATTGGTATATAAACCTAGTATGTTTGAGAGTAATGATTCATATTGCAGAGGCTGTTATTGGTGTTCTGGATACAACTGGCTGGTCTAAACAGGAATCAGGACTGATAAGTACTCTAGACTGCTCGTACGGGTTTCGTGTGTCATTGGTCTGATCGATAAGTCGCTGCTCTCTAATAGGCGGGCCACAAGATATAACAATTGGCGACACACGTTATAAGAATTTATATAATGCTGTGAGAGGTATGAGAAAGATTGTCATTTCCTGGTTACTTAAGCTGTAGAAGAATACTTCTTTAGGTTATCTGAAGAGAAAGTCAAATTATGTGTATGAGTGGCCATGACTTTCTGATAGCATGACAACAGTGCCCGAAGAATAACTACTTGAGGCAGATCACATTGAACTTTATGAGTAGTTTTAGATGTGTTATTTCTATACTTTAGAGGTGACAGAAATCCGTTAGAGGAATCTGAGGTGTACTACTTTTTAGCCA] [+] EMBL CD087198 [CAAAATCTTGTAAACATGTTGTTTCTATTTGATGGTACGATGTGGTCTGTTTGATTGGTATATAAACCTAGTATGTTTGAGAGTAATGATTCATATTGCAGAGGCTGTTATTGGTGTTCTGG ] [-] EMBL CD160221 [ GGTATATAAACCCAGTATGTTTGAGAATAATGATTCATATTGCAGAGGCTATTATTGGTGTTCTGGATACAACTGGCTGGTCTAAACAGGAATCAGGACTGATAAGTACTCTAGACTGCTCGTACGGGTTTCGTGTGTCATTGGTCTGATCGATAAGTCGCTGCTCTCTAATAGGCGGGCCACAAGATATAACAATTGGCGACACACGTTATAAGAATTTATATAATGCTGTGAGAGGTATGAGAAAGATTGTCATTTCCTGGTTACTTAAGCTGTAGAAGAATACTTCTTTAGGTTATCTGAAGAGAAAGTCAAATTATGTGTATGAGTGGCCATGACTTTCTGATAGCATGACAACAGTGCCCGAAGAATAACTACTTGAGGCAGATCACATTGAACTTTATGAGTAGTTTTAGATGTGTTATTTCTATACTTTAGAGGTGACAGAAATCCGTTAGAGGAATCTGAGGTGTACTACTTTTTAGCCA] consensusID : consensus_9111#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 492 fasta sequence [GGGATAATAACACAAATAGACCAAATATTTAGGGATTGAGAAGGGCTTGACGGTGAGCAGTAAATACCACCGAGTACCTGAAACTTCCTAGTAACCGTCATCAAGAAAGGATATCATATTTGTGATACTGAACTAGAATCAAATTGATGTTACTTGTTATGTATTCCTAAAAGCTTGACCATACAGTTCGAGGAGTAACTGTTGGAGGTTCACACAATCGTTTTGTGAGTAATTTTTGTTGTGCTATCCCGGTTTCCCTCAAGCCAACAAAAAATATTGTGTCGTCCGGATCCTATTTAGCACGTAATACCTTTTTTTCCTGCTTAACTGTTGTCTGTCAACTTCTTTGTACCAAGTATTAATACAATACTAGCCATAACATACTAAGTTATATCAAATGATGATCATGTACAACTTAATTTTGTAGTAAATTTATCCCAGTGGCAATCACATTTTTGTATGGTGTTCCTGTAATCGGTTGGATCTTATGGC] [+] EMBL CD069683 [GGGATAATAACACAAATAGACCAAATATTTAGGGATTGAGAAGGGCTTGACGGTGAGCAGTAAATACCACCGAGTACCTGAAACTTCCTAGTAACCGTCATCAAGAAAGGATATCATATTTGTGATACTGAACTAGAATCAAATTGATGTTACTTGTTATGTATTCCTAAAAGCTTGACCATACAGTTCGAGGAGTAACTGTTGGAGGTTCACACAATCGTTTTGTGAGTAATTTTTGTTGTGCTATCCCGGTTTCCCTCAAGCCAACAAAAAATATTGTGTCGTCCGGATCCTATTTAGCACGTAATACCTTTTTTTCCTGCTTAACTGTTGTCTGTCAACTTCTTTGTACCAAGTATTAATACAATACTAGCCATAACATACTAAGTTATATCAAATGATGATCATGTACAACTTAATTTTGTAGTAAATTTATCCCAGTGGCAATCACATTTTTGTATGGTGTTCCTGTAATCGGTTGGATCTTATGGC] [+] EMBL CD069693 [GGGATAATAACACAAATAGACCAAATATTTAGGGATTGAGAAGGGCTTGACGGTGAGCAGTAAATACCACCGAGTACCTGAAACTTCCTAGTAACCGTCATCAAGAAAGGATATCATATTTGTGATACTGAACTAGAATCAAATTGATGTTACTTGTTATGTATTCCTAAAAGCTTGACCATACAGTTCGAGGAGTAACTGTTGGAGGTTCACACAATCGTTTTGTGAGTAATTTTTGTTGTGCTATCCCGGTTTCCCTCAAGCCAACAAAAAATATTGTGTCGTCCGGATCCTATTTAGCACGTAATACCTTTTTTTCCTGCTTAACTGTTGTCTGTCAACTTCTTTGTACCAAGTATTAATACAATACTAGCCATAACATACTAAGTTATATCAAATGATGATCATGTACAACTTAATTTTGTAGTAAATTTATCCCAGTGGCAATCAAATTTTTGTATGGTGTTCCTGTAATCGGTTG ] [+] EMBL CD069684 [GGGATAATAACACAAATAGACCAAATATTTAGGGATTGAGAAGGGCTTGACGGTGAGCAGTAAATACCACCGAGTACCTGAAACTTCCTAGTAACCGTCATCAAGAAAGGATATCATATTTGTGATACTGAACTAGAATCAAATTGATGTTACTTGTTATGTATTCCTAAAAGCTTGACCATACAGTTCGAGGAGTAACTGTTGGAGGTTCACACAATCGTTTTGTGAGTAATTTTTGTTGTGCTATCCCGGTTTCCCTCAAGCCAACAAAAAATATTGTGTCGTCCGGATCCTATTTAGCACGTAATACCTTTTTTTCCTGCTTAACTGTTGTCTGTCAACTTCTTTGTACCAAGTATTAATACAATACTAGCCATAACATACTAAGTTATATCAAATGATGATCATGTACAACTTAATTTTGTAGTAAATTTATCCCAGTG ] consensusID : consensus_9111#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 463 fasta sequence [CTGATATTTAGTCAGTTCGATTACGGGTAGTGTTAACAACAATATTCTATGTCTAGATCTCAATGAAGGAACCTGATGAACTTTCATCTTATTTCTTATCTGATACACCTATCGTAACTCAGTTTCCAGATGACTGTAGTGAAGTGATTCCACAAGTCCGTCCCATTTTCGTTTCGTTATACAAAGGCATAGGTTTACGATAAATATAAATATCAGTTGCTGAAGTACGCAATTACTGTGCGATCTAACTATAGACAACCAGAGCAACAATTTTTATAGGTACATGGAACGTCCGAACAATGTGAGAGACAGGGAAGACCAGTCAAATAGCAATGGAAATGAGAAGATACAAATTGGCAGTACTCGGAATCAGCGAAACCCATTGGACACAAGCTGGACAACAAAGGCAAGATACGGGGATAATGCTGCTGTACTCTGGTCACGAAGAAGAAATGCTCCACAC] [+] EMBL CD086851 [CTGATATTTAGTCAGTTCGATTACGGGTAGTGTTAACAACAATATTCTATGTCTAGATCTCAATGAAGGAACCTGATGAACTTTCATCTTATTTCTTATCTGATACACCTATCGTAACTCAGTTTCCAGATGACTGTAGTGAAGTGATTCCACAAGTCCGTCCCATTTTCGTTTCGTTATACAAAGGCATAGGTTTACGATAAATATAAATATCAGTTGCTGAAGTACGCAATTACTGTGCGATCTAACTATAGACAACCAGAGCAACAATTTTTATAGGTACATGGAACGTCCGAACAATGTGAGAGACAGGGAAGACCAGTCAAATAGCAATGGAAATGAGAAGATACAAATTGGCAGTACTCGGAATCAGCGAAACCCATTGGACACAAGCTGGACAACAAAGGCAAGATACGGGGATAATGCTGCTGTACTCTGGTCACGAAGAAGAAATGCTCCACAC] consensusID : consensus_9111#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 407 fasta sequence [TATGTACATGGAACCTCCGGACAATGTGGGAGACTGGGAAGACCAGTCAAATAGCAATGGAAATGAGGAGATACAAATTGGCAGTACTTGGAATCAGCGAAACCCATCGGACACAAGCTGGACAGCAAAGGCTAGATACGGGAGAGATGCTGCTGTACTCTGTTCACGAAGAGGAAAATGCTCCACACACTACTACTATATGATTTACCATTCCTGAGTTATACCCAGTTTATTATTAATGTTCCCCTTATTCACAGCCACATTTAGCTAAATCTTGTACAAATGTTATTTTCTATTTGATGGTTCGATGTGATCTGTGTGATTGGTATATAAACCCAGTATGTTTGAGAATAATGATTCATATTGCAGAGGCTATTATTGGTGTTCTGGATACAACTGGCTGGTCT] [+] EMBL CD160283 [TATGTACATGGAACCTCCGGACAATGTGGGAGACTGGGAAGACCAGTCAAATAGCAATGGAAATGAGGAGATACAAATTGGCAGTACTTGGAATCAGCGAAACCCATCGGACACAAGCTGGACAGCAAAGGCTAGATACGGGAGAGATGCTGCTGTACTCTGTTCACGAAGAGGAAAATGCTCCACACACTACTACTATATGATTTACCATTCCTGAGTTATACCCAGTTTATTATTAATGTTCCCCTTATTCACAGCCACATTTAGCTAAATCTTGTACAAATGTTATTTTCTATTTGATGGTTCGATGTGATCTGTGTGATTGGTATATAAACCCAGTATGTTTGAGAATAATGATTCATATTGCAGAGGCTATTATTGGTGTTCTGGATACAACTGGCTGGTCT] [+] EMBL CD160090 [TATGTACATGGAACCTCCGGACAATGTGGGAGACTGGGAAGACCAGTCAAATAGCAATGGAAATGAGGAGATACAAATTGGCAGTACTTGGAATCAGCGAAACCCATCGGACACAAGCTGGACAGCAAAGGCTAGATACGGGAGAGATGCTGCTGTACTCTGTTCACGAAGAGGAAAATGCTCCACACACTATTACTATATGATTTACCATTCCTGAGTTATACCCAGTTTATTATTAATGTTCCCCTTATTCACAGCCACATTTAGCTTAATCTTGTACAAATGTTATTTTCTATTTGATGGTTCGATGTGATCTGTGTGATTGGTATTTTAACCCAGTATGTTTGAGAATTATGATTCATATTGCAGAGGCTATT ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9111#2 --------------------------------------------------------CTGA 4 consensus_9111#3 ------------------------------------------------------------ consensus_9111#0 CAAAATCTTGTAAACATGTTGTTTCTATTTGATGGTACGATGTGGTCTGTTTGATTGGTA 60 consensus_9111#1 GGGATAATAACACAAATAGACCAAATATTTAGGGATTGAGAAGGGCTTGACGGTGAGCAG 60 consensus_9111#2 TATTTAGT-CAGTTCGATTACGGGT----AGTGTTAACAACAATATTCTATGTCTAGATC 59 consensus_9111#3 TATGTACA-TGGAAC--CTCCGGAC----AATGTGGGAGACTGGGAAGACCAGTCAAATA 53 consensus_9111#0 TATAAACC-TAGTATGTTTGAGAGT----AATGATTCATATTGCAGAGGCTGTTATTGGT 115 consensus_9111#1 TAAATACCACCGAGTACCTGAAACTTCCTAGTAACCGTCATCAAGAAAG--GATATCATA 118 ** * * * * * * consensus_9111#2 TCAATG-AAGGAA---CCTGATGAACTTTCATCTTATTTCTTATCTGATACACCTA--TC 113 consensus_9111#3 GCAATGGAAATGA---GGAGATACAAATTGGCAGTACTTGGAATCAGCGAAACCCA--TC 108 consensus_9111#0 GTTCTGGATACAACTGGCTGGTCTAAACAGGAATCAGGACTGATAAGTACTCTAGA--CT 173 consensus_9111#1 TTTGTGATACTGA--ACTAGAATCAAATTGATGTTACTTGTTATGTATTCCTAAAAGCTT 176 ** * * * * ** * consensus_9111#2 GTAACTC-AGTTTCCAGATGACTGTAGTGAAGTGATTCCACAAGTCCGTCCCATT---TT 169 consensus_9111#3 GGACACA-AGCT---GGACAGCAAAGGCTAGATACGGGAGAGATGCTGCTGTACT---CT 161 consensus_9111#0 GCTCGTACGGGTTTCGTGTGTCATTGGTCTGATCGATAAGTCGCTGCTCTCTAATAGGCG 233 consensus_9111#1 GACCATACAGTT--CGAGGAGTAACTGTTGGAGGTTCACACAATCGTTTTGTGAG---TA 231 * * * * consensus_9111#2 CGTTTCGTTATACAAAG---GCATAGGTTTACGATAA--ATATAAATATCAGTTGCTGAA 224 consensus_9111#3 GTTCACGAAGAGGAAAA---TGCTCCACACACTACTACTATATGATTTACCATTCCTGAG 218 consensus_9111#0 GGCCACAAGATATAACAATTGGCGACACACGTTATAAGAATTTATATAATGCTGTGAGAG 293 consensus_9111#1 ATTTTTGTTGTGCTATC-CCGGTTTCCCTCAAGCCAACAAAAAATATTGTGTCGTCCGGA 290 * * * * * consensus_9111#2 GTACGC---AATTACTGT--GCGATCTAACTATAGACAACCAGAGCAA--CAATTTTT-- 275 consensus_9111#3 TTATACCCAGTTTATTATTAATGTTCCCCTTATTCACAGCCACATTTAGCTAAATCTT-- 276 consensus_9111#0 GTATGA--GAAAGATTGTC-ATTTCCTGGTTACTTA-AGCTGTAGAAGAATACTTCTTTA 349 consensus_9111#1 TCCTATTTAGCACGTAATACCTTTTTTTCCTGCTTA--ACTGTTGTCTGTCAACTTCT-- 346 * * * * * * * consensus_9111#2 -ATAGGTACATGGAACGTCCGAACAATGTG-AGAGACAGGGAAGACCA----GTCAAATA 329 consensus_9111#3 -GTA--CAAATGTTATTTTCTA----TTTG-ATGGTTCGATGTGATCT----GTGTGATT 324 consensus_9111#0 GGTTATCTGAAGAGAAAGTCAAATTATGTGTATGAGTGGCCATGACTTTCTGATAGCATG 409 consensus_9111#1 --TTGTACCAAGTATTAATACAATACTAGCCATAACATACTAAGTTAT----ATCAAATG 400 * * * * * * * * ** consensus_9111#2 GCAATGGAAATGAGAAGATACAAATTGGCAGTACTCGGAATCAGCGAAACCCATTGGACA 389 consensus_9111#3 GGTATATAAACCC-AGTATGTTTGAGAATAATGATTCATATT-GCAGAGGCTATTATTGG 382 consensus_9111#0 ACAACAGTGCCCGAAGAATAACTACTTGAGGCAGATCACATT---GAACTTTATGAGTAG 466 consensus_9111#1 ATGATCATGTACAACTTAATTTTGTAGTAAATTTATCCCAGTGGCAATCACATTTTTGTA 460 * * * * consensus_9111#2 CAAGCTGGACAACAAAGGCAAGATACGGGGATAATGCTGCTGTACTCTGGTCA-CGAAGA 448 consensus_9111#3 TGTTCTGGATACAACTGGCTGGTCT----------------------------------- 407 consensus_9111#0 TTTTAGATGTGTTATTTCTATACTTTAGAGGTGACAGAAATCCGTTAGAGGAATCTGAGG 526 consensus_9111#1 TGGTGTTCCTGTAATCGGTTGGATCTTATGGC---------------------------- 492 * consensus_9111#2 AGAAATGCTCCACAC--- 463 consensus_9111#3 ------------------ consensus_9111#0 TGTACTACTTTTTAGCCA 544 consensus_9111#1 ------------------ |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||