These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_914#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 374 fasta sequence [AGATCGCCGTGCTTCAGCGACTGGCCGCGGCCAACAAGCAAGGTGGACGTCATTGAAAGCGGCCATCCCCGAGCCTGCTGATCACCAGCGGCACGCTCAACGCCGCAGGGAGGCCAATGAGCGTATCACGGGCCCGATGGAACCTTGAACAACCCGATCGGGTGAACACATTCACCGTCACCAGTCTGTCCATGATTGGCCGCCTCCAGGTTGCGGCCGGGGCAATCCCGGCCTATGTTCCAAGCGATACATTTATCTGCAACCAGCCGCCCCAGCCTGCTGTCCATCCAATACGAACGCCCCCCCGTAACGAGGTGACACATGCCGAACAACTCCCGCCCCGCCGTGCTCGAACTGATCGGCAATACGCCGCT] [+] EMBL CD158874 [AGATCGCCGTGCTTCAGCGACTGGCCGCGGCCAACAAGCAAGGTGGACGTCATTGAAAGCGGCCATCCCCGAGCCTGCTGATCACCAGCGGCACGCTCAACGCCGCAGGGAGGCCAATGAGCGTATCACGGGCCCGATGGAACCTTGAACAACCCGATCGGGTGAACACATTCACCGTCACCAGTCTGTCCATGATTGGCCGCCTCCAGGTTGCGGCCGGGGCAATCCCGGCCTATGTTCCAAGCGATACATTTATCTGCAACCAGCCGCCCCAGCCTGCTGTCCATCCAATACGAACGCCCCCCCGTAACGAGGTGACACATGCCGAACAACTCCCGCCCCGCCGTGCTCGAACTGATCGGCAATACGCCGCT] consensusID : consensus_914#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 265 fasta sequence [GCGACTGGCCGCGGCCAACAAGCAAGGTGGACGTCATTGAAAGCGGCCATCCCCGAGCCTGCTGATCACCAGCGGCACGCTCAACGCCGCAGGGAGGCCAATGAGCGTATCACGGGCCCGATCCTGCCCCCTTCGCGGGAGTGCGCCCCGACAGACGCAATGATCGTGTCCCGGGAAGTGGTGTAACTGAACCAACCGAAGGCGCCTTGCGGGCGAAAGAGGTTGGTCATCGTGGTTTTTGGCTAACGTTGAGTTTGCGAAGACC] [+] EMBL CD164025 [GCGACTGGCCGCGGCCAACAAGCAAGGTGGACGTCATTGAAAGCGGCCATCCCCGAGCCTGCTGATCACCAGCGGCACGCTCAACGCCGCAGGGAGGCCAATGAGCGTATCACGGGCCCGATCCTGCCCCCTTCGCGGGAGTGCGCCCCGACAGACGCAATGATCGTGTCCCGGGAAGTGGTGTAACTGAACCAACCGAAGGCGCCTTGCGGGCGAAAGAGGTTGGTCATCGTGGTTTTTGGCTAACGTTGAGTTTGCGAAGACC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_914#0 AGATCGCCGTGCTTCAGCGACTGGCCGCGGCCAACAAGCAAGGTGGACGTCATTGAAAGC 60 consensus_914#1 ----------------GCGACTGGCCGCGGCCAACAAGCAAGGTGGACGTCATTGAAAGC 44 ******************************************** consensus_914#0 GGCCATCCCCGAGCCTGCTGATCACCAGCGGCACGCTCAACGCCGCAGGGAGGCCAATGA 120 consensus_914#1 GGCCATCCCCGAGCCTGCTGATCACCAGCGGCACGCTCAACGCCGCAGGGAGGCCAATGA 104 ************************************************************ consensus_914#0 GCGTATCACGGGCCCGATGGAACCTTGAACAACCCGATCGGGTGAACACATTCACCGTCA 180 consensus_914#1 GCGTATCACGGGCCCGAT-----CCTGC----CCCCTTCGCGGGAGTGCGCCC-----CG 150 ****************** * ** *** *** * ** * * * consensus_914#0 CCAGTCTGTCCATGATTGGCCGCCTCCAGGT--TGCGGCCGGGGCAATCCCGGCCTATGT 238 consensus_914#1 ACAGACG--CAATGATCGTGTCCCGGGAAGTGGTGTAACTGAACCAACCGAAGGC-GCCT 207 *** * * ***** * ** * ** ** * * *** * * * * consensus_914#0 TCCAAGCGATACATTTATCTGCAACCAGCCGCCCCAGCCTGCTGTCCATCCAATACGAAC 298 consensus_914#1 TGCGGGCGAAAGA--GGTTGGTCATC-GTGGTTTTTGGCTAACGTTGAGTT--TGCGAAG 262 * * **** * * * * * * * * * ** ** * * **** consensus_914#0 GCCCCCCCGTAACGAGGTGACACATGCCGAACAACTCCCGCCCCGCCGTGCTCGAACTGA 358 consensus_914#1 ACC--------------------------------------------------------- 265 ** consensus_914#0 TCGGCAATACGCCGCT 374 consensus_914#1 ---------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||