cluster # 9150

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Schistosoma mansoni
cluster # 9150 cluster # 9150 Sequences # 8 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9150#0 length = 786 sequences # 3

consensus_9150#1 length = 595 sequences # 4
consensus_9150#2 length = 565 sequences # 1

consensusID : consensus_9150#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 786
fasta sequence

                              [TCCTGGCTCGAGGGCCTAAAATTAAAGAAGAATCATTACGCAGTTTTTTATTTACTTTTAGTGCAATACATGATTCAATGACATTAGATCGTTTATCTATGTGTTTTGAATTACCAAAATCTGTAATTTATTCAGTCATTTGTCGTATGATTATCAATCAAGAATTAGCTGCCTCTTTGGAAGTTCCTAGTGATGCATTAATAATGCATAAAACAGAACGTTCACGTCTTCAGGCTCTTGCTTTGCAACTTAGTGATAAAGTCAATAGTATAGTTGAAATGAATGACAAACTAATTGAGTCACGTACTGGTGGTTTGTCTGGTTTGAAAGGTTCTCAGTCGTATCAAGGAACGCGTCGTGTGGGAACTCGTTACACTTTGAATAAATTTAACTGAAAATAGACAAGATCATTCGACATTTTCGTCATGATTGATTGATAAGCTGTTGACCTGTCTTCTAGTACACTTTACGGATTTCACACGCCGATCTGTGTTTTTTTGTCACTGTAATCTTTACTTATGCCTTGTGAGCTTTATATTACAAGTGCTATCTCGGTATAATCCTATGTACGTTCGAAGACTGTTTTCGAATTCAATCTTTTTCTTCCAACTTTTACTTATTTGTGTATTATGCAAAACGTCAAGCTACTCTGTTTAGATCACTAGTCTGGCAGATTCATGCTCGTCAGTATTATTACTTACCATAGTTTATTGAAGGTGAATAATGGGACTCTTTTTATAAATAAAAGCTTTTAAATGCNNNNNNNNNNNNNNNNNNNNNNNNNNN]

[+] EMBL CD082218             [TCCTGGCTCGAGGGCCTAAAATTAAAGAAGAATCATTACGCAGTTTTTTATTTACTTTTAGTGCAATACATGATTCAATGACATTAGATCGTTTATCTATGTGTTTTGAATTACCAAAATCTGTAATTTATTCAGTCATTTGTCGTATGATTATCAATCAAGAATTAGCTGCCTCTTTGGAAGTTCCTAGTGATGCATTAATAATGCATAAAACAGAACGTTCACGTCTTCAGGCTCTTGCTTTGCAACTTAGTGATAAAGTCAATAGTATAGTTGAAATGAATGACAAACTAATTGAGTCACGTACTGGTGGTTTGTCTGGTTTGAAAGGTTCTCAGTCGTATCAAGGAACGCGTCGTGTGGGAACTCGTTACACTTTGAATAAATTTAACTGAAAATAGACAAGATCATTCGACATTTTCGTCATGATTGATTGATAAGCTGTTGACCTGTCTTCTAGTACACTTTACGGATTTCACACGCCGATCTGTGTTTTTTTGTCACTGTAATCTTTACTTATGCCTTGTGAGCTTTATATTACAAGTGCTATCTCGGTATAATCCTATGTACGTTCGAAGACTGTTTTCGAATTCAATCTTTTTCTTCCAACTTTTACTTATTTGTGTATTATGCANAACGTCAAGCTACTCTGNTTAGATCACTAGTCTGGCAGATTCATGCTCGTCAGTATTATTACTTACCATAGTTTATTGAAGGTGAAATATGGGACTC TTTTAT AATAAAAGCTNTTAAATGCNNNNNNNNNNNNNNNNNNNNNNNNNNN]
[-] EMBL CD073408             [                                                                                                                                                                      AGCTGCCTCTTTGGAAGTTCCTAGTGATGCATTAATAATGCATAAAACAGAACGTTCACGTCTTCAGGCTCTTGCTTTGCAACTTAGTGATAAAGTCAATAGTATAGTTGAAATGAATGACAAACTAATTGAGTCACGTACTGGTGGTTTGTCTGGTTTGAAAGGTTCTCAGTCGTATCAAGGAACGCGTCGTGTGGGAACTCGTTACACTTTGAATAAATTTAACTGAAAATAGACAAGATCATTCGACATTTTCGTCATGATTGATTGATAAGCTGTTGACCTGTCTTCTAGTACACTTTACGGATTTCACACGCCGATCTGTGTTTTTTTGTCACTGTAATCTTTACTTATGCCTTGTGAGCTTTATATTACAAGTGCTATCTCGGTATAATCCTATGTACGTTCGAAGACTGTTTTCGAATTCAATCTTTTTCTTCCAACTTTTACTTATTTGTGTATTATGCAAATCGTCAAGCTACTCTGTTTAGATCACTAGTCTGGCAGATTCATGCTCGTCAGTATTATTACTTACCATAGTTTATTGAAGGTGAATAATGGGACTCTTTTTATAAATAAAAGCTT                                   ]
[+] EMBL CD185584             [                                                                                                                                                                                                                                                                                                                                                                                                    TAACTGAAAATAGACAAGATCATTCGACATTTTCGTCATGATTGATTGATAAGCTGTTGACCTGTCTTCTAGTACACTTTACGGATTTCACACGCCGATCTGTGTTTTTTTGTCACTGTAATCTTTACTTATGCCTTGTGAGCTTTATATTACAAGTGCTATCTCGGTATAATCCTATGTACGTTCGAAGACTGTTTTCGAATTCAATCTTTTTCTTCCAACTTTTACTTATTTGTGTATTATGCAAAACGTCAGGCTACTCTGTTTAGATCACTAGTCTGGCAGATTCATGCTCGTCAGTATTATTACTTACCATAGTTTATTGAAGGTGAATAATGGGACTCTTTTTATAAATAAAAGCTT                                   ]




>consensus_9150#0
TCCTGGCTCGAGGGCCTAAAATTAAAGAAGAATCATTACGCAGTTTTTTATTTACTTTTA
GTGCAATACATGATTCAATGACATTAGATCGTTTATCTATGTGTTTTGAATTACCAAAAT
CTGTAATTTATTCAGTCATTTGTCGTATGATTATCAATCAAGAATTAGCTGCCTCTTTGG
AAGTTCCTAGTGATGCATTAATAATGCATAAAACAGAACGTTCACGTCTTCAGGCTCTTG
CTTTGCAACTTAGTGATAAAGTCAATAGTATAGTTGAAATGAATGACAAACTAATTGAGT
CACGTACTGGTGGTTTGTCTGGTTTGAAAGGTTCTCAGTCGTATCAAGGAACGCGTCGTG
TGGGAACTCGTTACACTTTGAATAAATTTAACTGAAAATAGACAAGATCATTCGACATTT
TCGTCATGATTGATTGATAAGCTGTTGACCTGTCTTCTAGTACACTTTACGGATTTCACA
CGCCGATCTGTGTTTTTTTGTCACTGTAATCTTTACTTATGCCTTGTGAGCTTTATATTA
CAAGTGCTATCTCGGTATAATCCTATGTACGTTCGAAGACTGTTTTCGAATTCAATCTTT
TTCTTCCAACTTTTACTTATTTGTGTATTATGCAAAACGTCAAGCTACTCTGTTTAGATC
ACTAGTCTGGCAGATTCATGCTCGTCAGTATTATTACTTACCATAGTTTATTGAAGGTGA
ATAATGGGACTCTTTTTATAAATAAAAGCTTTTAAATGCNNNNNNNNNNNNNNNNNNNNN
NNNNNN

consensusID : consensus_9150#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 595
fasta sequence

                              [TTGGAAATCCCAAATTTAGCAGCTCATGAAACGGATTTACGTTGGCGTCCTATTAGCAAACCGTTTCATCTTGCCTTACGTGTTCATGATCGTGCTGCATTAGTTGGACCACCTGAAACACCAAGAGACCATGTTCTAGCTGCTGCTAAAGCTATGCGTTATGGCAATTGGAAAGCTTGTACTAATTTTATCATCAATCCCAAAATGGATGCTAAAATTTGGGATTTATTATTTGAATCGAATAAAGTGAAACAAAATTTAGAAGTTAAAATTAAAGAAGAATCATTACGCAGTTTTTTATTTACTTTTAGTGCAATACATGATTCAATGACATTAGATCGTTTATCTATGTGTTTTGAATTACCAAAATCTGTAATTTATTCAGTCATTTGTCGTATGATTATCAATCAAGAATTAGCTGCCTCTTTGGAAGTTCCTAGTGATGCATTAATAATGCATAAAACAGAACGTTCACGTCTTCAGGCTCTTGCTTTGCAACTTAGTGATAAAGTCAATAGTATAGTTGAAATGAATGACAAACTAATTGAGTCACGTACTGGTGGTTTGTCTGGTTTGAAGGTTCTCAGTCGTATCA]

[+] EMBL CD078954             [TTGGAAATCCCAAATTTAGCAGCTCATGAAACGGATTTACGTTGGCGTCCTATTAGCAAACCGTTTCATCTTGCCTTACGTGTTCATGATCGTGCTGCATTAGTTGGACCACCTGAAACACCAAGAGACCATGTTCTAGCTGCTGCTAAAGCTATGCGTTATGGCAATTGGAAAGCTTGTACTAATTTTATCATCAATCCCAAAATGGATGCTAAAATTTGGGATTTATTATTTGAATCGAATAAAGTGAAACAAAATTTAGAAGTTAAAATTAAAGAAGAATCATTACGCAGTTTTTTATTTACTTTTAGTGCAATACATGATTCAATGACATTAGATCGTTTATCTATGTGTTTTGAATTACCAAAATCTGTAATTTATTCAGTCATTTGTCGTATGATTATCAATCAAGAATTAGCTGCCTCTTTGGAAGTTCCTAGTGATGCATTAATAATGCATAAAACAGAACGTTCACGTCTTCAGGCTCTTGCTTTGCAACTTAGTGATAAAGTCAATAGTATAGTTGAAATGAATGACAAACTAATTGAGTCACGTACTGGTGGTTTGTCTGGTTTGAAGGTTCTCAGTCGTATCA]
[+] EMBL CD181057             [                                                                                                                                     TTCTAGCTGCTGCTAAAGCTATGCGTTATGGCAATTGGAAAGCTTGTACTAATTTTATCATCAATCCCAAAATGGATGCTAAAATTTGGGATTTATTATTTGAATCGAATAAAGTGAAACAAAATTTAGAAGTTAAAATTAAAGAAGAATCATTACGCAGTTTTTTATTTACTTTTAGTGCAATACATGATTCAATGACATTAGATCGTTTATCTATGTGTTTTGAATTACCAAAATCTGTAATTTATTCAGTCATTTGTCGTATGATTATCAATCAAGAATTAGCTGCCTCTTTGGAAGTTCCTAGTGATGCATTAATAATGCATAAAACAGAACGTTCACGTCTTCAGGCTCTTGCTTTGCAACTTAGTGATAAAGTCAATAGTATAGTTGAAATGAATGACAAACTAATT                                                 ]
[+] EMBL CD180916             [                                                                                                                                      TCTAGCTGCTGCTAAAGCTATGCGTTATGGCAATTGGAAAGCTTGTACTAATTTTATCATCAATCCCAAAATGGATGCTAAAATTTGGGATTTATTATTTGAATCGAATAAAGTGAAACAAAATTTAGAAGTTAAAATTAAAGAAGAATCATTACGCAGTTTTTTATTTACTTTTAGTGCAATACATGATTCAATGACATTAGATCGTTTATCTATGTGTTTTGAATTACCAAAATCTGTAATTTATTCAGTCATTTGTCGTATGATTATCAATCAAGAATTAGCTGCCTCTTTGGAAGTTCCTAGTGATGCATTAATAATGCATAAAACAGAACGTTCACGTCTTCAGGCTCTTGCTTTGCAACTTAGTGATAAAGTCAATAGTATAGTTGAAATGAATGACAAACTAATT                                                 ]
[+] EMBL CD121336             [                                                                                                                                                        TATGCGTTATGGCAATTGGAAAGCTTGTACTAATTTTATCATCAATCCCAAAATGGATGCTAAAATTTGGGATTTATTATTTGAATCGAATAAAGTGAAACAAAATTTAGAAGTTAAAATTAAAGAAGAATCATTACGCAGTTTTTTATTTACTTTTAGTGCAATACATGATTCAATGACATTAGATCGTTTATCTATGTGTTTTGAATTACCAAAATCTGTAATTTATTCAGTCATTTGTCGTATGATTATCAATCAAGAATTAGCTGCCTCTTTGGAAGTTCCTAGTGATGCATTAATAATGCATGAAACAGAACGTTCACGTCTTCAGGCTCTTGCTTTGCAACTTAGTGATAAAGTCAATAGTATAGTTGAAATGAATGACAAACTAATTGAGTCACGTACTGGTGGTTTGTCTG                        ]




>consensus_9150#1
TTGGAAATCCCAAATTTAGCAGCTCATGAAACGGATTTACGTTGGCGTCCTATTAGCAAA
CCGTTTCATCTTGCCTTACGTGTTCATGATCGTGCTGCATTAGTTGGACCACCTGAAACA
CCAAGAGACCATGTTCTAGCTGCTGCTAAAGCTATGCGTTATGGCAATTGGAAAGCTTGT
ACTAATTTTATCATCAATCCCAAAATGGATGCTAAAATTTGGGATTTATTATTTGAATCG
AATAAAGTGAAACAAAATTTAGAAGTTAAAATTAAAGAAGAATCATTACGCAGTTTTTTA
TTTACTTTTAGTGCAATACATGATTCAATGACATTAGATCGTTTATCTATGTGTTTTGAA
TTACCAAAATCTGTAATTTATTCAGTCATTTGTCGTATGATTATCAATCAAGAATTAGCT
GCCTCTTTGGAAGTTCCTAGTGATGCATTAATAATGCATAAAACAGAACGTTCACGTCTT
CAGGCTCTTGCTTTGCAACTTAGTGATAAAGTCAATAGTATAGTTGAAATGAATGACAAA
CTAATTGAGTCACGTACTGGTGGTTTGTCTGGTTTGAAGGTTCTCAGTCGTATCA

consensusID : consensus_9150#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 565
fasta sequence

                              [ATTACTCATCACATGCACTTGTAACATTGGCAGTTGGCATTATATCTTGTGGATTATCCGATTGTATACCTTAACCATACATGTATAATAATTTGCTTTCTTTGGAAATCAATATTGACTATATCTTAACTTACTTGTCTATTGTTGTTTTCTTTTCACTCAGCGCGTCGTGTGGGAACTCGTTACACTTTGAATAAATTTAACTGAAAATAGACAAGATCATTCGACATTTTCGTCATGATTGATTGATAAGCTGTTGACCTGTCTTCTAGTACACTTTACGGATTTCACACGCCGATCTGTGTTTTTTTGTCACTGTAATCTTTACTTATGCCTTGTGAGCTTCATATTACAAGTGCTATCTCGGTATAATCCTATGTACGTTCGAAGACTGTTTTCGAATTCAATCTTTTTCTTCCAACTTTTACTTATTTGTGTATTATGCAAAACGTCAAGCTACTTTGTTTAGATCACTAGTCTGGCAGATTCATGCTCGTCAGTATTATTACTTACCATAGTTTATTGAAGGTGAATAATGGGACTCTCTTTTTATAAATAAAAGCTT]

[-] EMBL BF936813             [ATTACTCATCACATGCACTTGTAACATTGGCAGTTGGCATTATATCTTGTGGATTATCCGATTGTATACCTTAACCATACATGTATAATAATTTGCTTTCTTTGGAAATCAATATTGACTATATCTTAACTTACTTGTCTATTGTTGTTTTCTTTTCACTCAGCGCGTCGTGTGGGAACTCGTTACACTTTGAATAAATTTAACTGAAAATAGACAAGATCATTCGACATTTTCGTCATGATTGATTGATAAGCTGTTGACCTGTCTTCTAGTACACTTTACGGATTTCACACGCCGATCTGTGTTTTTTTGTCACTGTAATCTTTACTTATGCCTTGTGAGCTTCATATTACAAGTGCTATCTCGGTATAATCCTATGTACGTTCGAAGACTGTTTTCGAATTCAATCTTTTTCTTCCAACTTTTACTTATTTGTGTATTATGCAAAACGTCAAGCTACTTTGTTTAGATCACTAGTCTGGCAGATTCATGCTCGTCAGTATTATTACTTACCATAGTTTATTGAAGGTGAATAATGGGACTCTCTTTTTATAAATAAAAGCTT]




>consensus_9150#2
ATTACTCATCACATGCACTTGTAACATTGGCAGTTGGCATTATATCTTGTGGATTATCCG
ATTGTATACCTTAACCATACATGTATAATAATTTGCTTTCTTTGGAAATCAATATTGACT
ATATCTTAACTTACTTGTCTATTGTTGTTTTCTTTTCACTCAGCGCGTCGTGTGGGAACT
CGTTACACTTTGAATAAATTTAACTGAAAATAGACAAGATCATTCGACATTTTCGTCATG
ATTGATTGATAAGCTGTTGACCTGTCTTCTAGTACACTTTACGGATTTCACACGCCGATC
TGTGTTTTTTTGTCACTGTAATCTTTACTTATGCCTTGTGAGCTTCATATTACAAGTGCT
ATCTCGGTATAATCCTATGTACGTTCGAAGACTGTTTTCGAATTCAATCTTTTTCTTCCA
ACTTTTACTTATTTGTGTATTATGCAAAACGTCAAGCTACTTTGTTTAGATCACTAGTCT
GGCAGATTCATGCTCGTCAGTATTATTACTTACCATAGTTTATTGAAGGTGAATAATGGG
ACTCTCTTTTTATAAATAAAAGCTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9150#0      TCCTGGCTCGAGGGCCTAAAATTAAAGAAGAATCATTACGCAGTTTTTTATTTACTTTTA 60
consensus_9150#2      ------------------------------------------------------------
consensus_9150#1      ------------------------------------------------------------
                                                                                  

consensus_9150#0      GTGCAATACATGATTCAATGACATTAGATCGTTTATCTATGTGTTTTGAATTACCAAAAT 120
consensus_9150#2      ------------------------------------------------------------
consensus_9150#1      ------------------------------------------------------------
                                                                                  

consensus_9150#0      CTGTAATTTATTCAGTCATTTGTCGTATGATTATCAATCAAGAATTAGCTGCCTCTTTGG 180
consensus_9150#2      ------------------------------------------------------------
consensus_9150#1      ------------------------------------------------------------
                                                                                  

consensus_9150#0      AAGTTCCTAGTG-ATGCATTAATAATGCATAAAA---CAGAACGTTCACGTCTTCAGGCT 236
consensus_9150#2      -ATTACTCATCACATGCACTTGTAACAT-TGGCA---GTTGGCATT-ATATCTTGTGGAT 54
consensus_9150#1      --TTGGAAATCCCAAAT-TTAGCAGCTCATGAAACGGATTTACGTTGGCGTCCT----AT 53
                         *    *    *     *   *     *   *        * **    ** *     *

consensus_9150#0      CTTGCTTTGCAACTTAGTGATAAAGTCAAT--AGTATAGT-TGAAATGAATGACA--AAC 291
consensus_9150#2      TATCCGATTGTATACCTTAACCATACATGT--ATAATAAT-TTGCTTTCTTTGGA--AAT 109
consensus_9150#1      TAGCAAACCGTTTCATCTTGCCTTACGTGTTCATGATCGTGCTGCATTAGTTGGACCACC 113
                                       *           *  *  **  *      *   *   *  *  

consensus_9150#0      TAATTGAGTCACGTACTGGTGGTTTGTCTGGTTTGAAAGGTTCTCAGTCGTATCAAGGAA 351
consensus_9150#2      CAAT--ATTGACTATATCTTAACTTACTTGTCTATTGTTGTTTTCTTT----TCACTCAG 163
consensus_9150#1      TGAAACACCAA-GAGACCATGTTCTAGCTG-CTGCTAAAGCTATGCGTTATGGCAATTGG 171
                        *   *   *        *    *   **  *      * * *   *     **     

consensus_9150#0      CGCGTCGTGTGGGAACT----CGTTACACTTTGAATAAATTT---AACTGAAAATAGACA 404
consensus_9150#2      CGCGTCGTGTGGGAACT----CGTTACACTTTGAATAAATTT---AACTGAAAATAGACA 216
consensus_9150#1      AAAG-CTTGTACTAATTTTATCATCAATCCCAAAATGGATGCTAAAATTTGGGATTTATT 230
                         * * ***   ** *    * * *  *    ***  **     ** *    **  *  

consensus_9150#0      AGATCATTCGAC--ATTTTCGTCATGATTGATTGAT--AAGCTGTTGACCTGTCTTCTAG 460
consensus_9150#2      AGATCATTCGAC--ATTTTCGTCATGATTGATTGAT--AAGCTGTTGACCTGTCTTCTAG 272
consensus_9150#1      ATTTGAATCGAATAAAGTGAAACAAAATTTAGAAGTTAAAATTAAAGAAGAATCATTACG 290
                      *  * * ****   *  *    **  *** *    *  **  *   **    ** *   *

consensus_9150#0      TA-CACTTTACGGATTTCACACGCCGATCTGTGTTTTTTTGTCACTGTAATCTTTACTTA 519
consensus_9150#2      TA-CACTTTACGGATTTCACACGCCGATCTGTGTTTTTTTGTCACTGTAATCTTTACTTA 331
consensus_9150#1      CAGTTTTTTATTTACTTTTAGTGC-AATACATGATTCAATGACATTAGATCGTTTATCTA 349
                       *    ****   * **     **  **   ** **   ** ** *  *   ****  **

consensus_9150#0      TGCCTTGTGAGCTTTATATTACAAGTGCTATCTCGGTATAATCCTATGTACGTTCGAAGA 579
consensus_9150#2      TGCCTTGTGAGCTTCATATTACAAGTGCTATCTCGGTATAATCCTATGTACGTTCGAAGA 391
consensus_9150#1      TGTGTTTTGAATT----ACCAAAATCTGTAATTTA-TTCAGTCATTTGT-CGTATGATTA 403
                      **  ** ***  *    *  * **    **  *   *  * ** * *** ***  **  *

consensus_9150#0      CTGTTTTCGAATTCAATCTTTTTCTTCCAACTTTTACTTATTTGTGTATTATGCAAAACG 639
consensus_9150#2      CTGTTTTCGAATTCAATCTTTTTCTTCCAACTTTTACTTATTTGTGTATTATGCAAAACG 451
consensus_9150#1      TCAATCAAGAATTAGCTGCCTCTTTGGAAGTTCCTAGTGATGCATTAATAATGCATAAAA 463
                          *   *****   *   * * *   *  *  ** * **   *  ** ***** **  

consensus_9150#0      TCAAGCTACTCTGT-TTAGATCACTAGTCTGGCAGATTCATGCTC--GTCAGTATTATTA 696
consensus_9150#2      TCAAGCTACTTTGT-TTAGATCACTAGTCTGGCAGATTCATGCTC--GTCAGTATTATTA 508
consensus_9150#1      CAGAACGTTCACGTCTTCAGGCTCTTGCTTTGCAACTTAGTGATAAAGTCAATAGTAT-A 522
                         * *      ** **    * ** *  * ***  **  ** *   **** ** *** *

consensus_9150#0      CTTACCATAGTTTATTGA--AGGTGAATAATGGGACTCT--TTT-TATAAATAAAAGCTT 751
consensus_9150#2      CTTACCATAGTTTATTGA--AGGTGAATAATGGGACTCTCTTTT-TATAAATAAAAGCTT 565
consensus_9150#1      GTTGAAATGAATGACAAACTAATTGAGTCACGTACTGGTGGTTTGTCTGGTTTGAAGGTT 582
                       **   **   * *   *  *  *** * * *      *  *** * *   *  *** **

consensus_9150#0      TTAAATGCNNNNNNNNNNNNNNNNNNNNNNNNNNN 786
consensus_9150#2      -----------------------------------
consensus_9150#1      CTCAGTCGTATCA---------------------- 595