cluster # 9164

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Schistosoma mansoni
cluster # 9164 cluster # 9164 Sequences # 8 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9164#0 length = 858 sequences # 7

consensus_9164#1 length = 506 sequences # 1

consensusID : consensus_9164#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 7
consensus length = 858
fasta sequence

                              [GGCATATCTTTGTGACAAAGACGGATGATATCATTATGAGTGTATCGATCTGAGAAGTGTATCAGGTAGATATAATCAACAGACTTTAGCAAAGAAGCATTCTGACGAATTTCATCCAAATGCGTATGACCATGACTTCTAGCGCTTTCAATCTTACGATCTGGATTATCTAAAAATGTTGCCTCCATTATCAATAGGCGAGATGATAAAAGATCTGGGCAGAGTGAATTCGCTTCGCGAATAATAGTAAATCTAGAATCACCTAAATAAGCTATTTCCGGAACTTCCTTGCCACTAGGATCTCGAGAATAAAGTAAATAACCCACACTAGTAATCGAGTGATCAGTTGAAAAAACAACTACATGCCAATCATCCGACAACTCATATTTATTTCCCGGTTCAACAGGAACAAAGGTACCGACAAAGTCTGAGTCAGCTTTTTCAGACATAGCAGTGAAAGCATCGCAAATAGCCTTCACATGTGGGACCAGATGCTTTGGCATGAAATATGTCGCTCTTCTTAGATTATTCAAGGCCCTCTNTTTCATATGCTGAGCGATAGCTCCAATATGATCAGCATGTCCATGACTAATAAATATATGATCGGCAAAAACGAGTGGTCTAGGTGAAAATCCAATATCGAAACCGAATACTTGGCGATTCTTACGTACAGCAACGCAGGTTTCGTTTCCGGCAACCGACCAGCCAAAAATTTCAAATCCCCCAACTTTCTTGCGAAATTCAAGTCTCTTTAGATTACGGATGTCAAAAGTATTCTTAGTAATTTATATCGAGACTTTAGTGAGCAAATAGTAGCAGCGCGTAAACATAAACACGCCTCGTGCCGAATCTTGGCTC]

[-] EMBL CD124641             [GGCATATCTTTGTGACAAAGACGGATGATATCATTATGAGTGTATCGATCTGAGAAGTGTATCAGGTAGATATAATCAACAGACTTTAGCAAAGAAGCATTCTGACGAATTTCATCCAAATGCGTATGACCATGACTTCTAGCGCTTTCAATCTTACGATCTGGATTATCTAAAAATGTTGCCTCCATTATCAATAGGCGAGATGATAAAAGATCTGGGCAGAGTGAATTCGCTTCGCGAATAATAGTAAATCTAGAATCACCTAAATAAGCTATTTCCGGAACTTCCTTGCCACTAGGATCTCGAGAATAAAGTAAATAACCCACACTAGT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL CD124713             [                                                                                                                   CCAAATGCGTATGACCATGACTTCTAGCGCTTTCAATCTTACGATCTGGATTATCTAAAAATGTTGCCTCCATTATCAATAGGCGAGATGATAAAAGATCTGGGCAGAGTGAATTCGCTTCGCGAATAATAGTAAATCTAGAATCACCTAAATAAGCTATTTCCGGAACTTCCTTGCCACTAGGATCTCGAGAATAAAGTAAATAACCCACACTAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL CD124808             [                                                                                                                   CCAAATGCGTATGACCATGACTTCTAGCGCTTTCAATCTTACGATCTGGATTATCTAAAAATGTTGCCTCCATTATCAATAGGCGAGATGATAAAAGATCTGGGCAGAGTGAATTCGCTTCGCGAATAATAGTAAATCTAGAATCACCTAAATAAGCTATTTCCGGAACTTCCTTGCCACTAGGATCTCGAGAATAAAGTAAATAACCCACACTAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL CD124708             [                                                                                                                   CCAAATGCGTATGACCATGACTTCTAGCGCTTTCAATCTTACGATCTGGTTTATCTAAAAATGTTGCCTCCATTATCAATAGGCGAGATGATAAAAGATCTGGGCAGAGTGAATTCGCTTCGCGAATAATAGTAAATCTAGAATCACCTAAATAAGCTATTTCCGGAACTTCCTTGCCACTAGGATCTCGAGAATAAAGTAAATAACCCACACTAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL CD187632             [                                                                                                                                                                             AAATGTTGCCTCCATTATCAATAGGCGAGATGATAAAAGATCTGGGCAGAGTGAATTCGCTTCGCGAATAATAGTAAATCTAGAATCACCTAAATAAGCTATTTCCGGAACTTCCTTGCCACTANGATCTCGAGAATAAAGTAAATAACCCACACTAGTAATCGAGTGATCAGTTGAAAAAACAACTACATGCCAATCATCCGACAACTCATATTTATTTCCCGGTTCAACAGGAACAAAGGTACCGACAAAGTCTGAGTCAGCTTTTTCAGACATAGCAGTGAAAGCATCGCAAATAGCCTTCACATGTGGGACCAGATGCTTTGGCATGAAATATGTCGCTCTTCTTAGATTATTCAAGGCCCTCTNTTTCATATGCTGAGCGATAGCTCCAATATGATCAGCATGT      CTAATAAATATATGATCGGCAAAAACGAGTGGTCTAGGTGAAAATCCAATATCGAAAC                                                                                                                                                                                                                    ]
[+] EMBL CD111272             [                                                                                                                                                                                                                                                                                                                                                      ataaagtAAATAAC  CCACA   CAATCATCCGATAACTCATATTTATTTCCCGGTTCAACAGGAACAAAGGTACCGACAAAGTCTGAGTCAGCTTTTTCAGACATAGCAGTGAAAGCATCGCAAATAGCCTTCACATGTGGGACCAGATGCTTTGGCATGAAATATGTCGCTCTTCTTAGATTATTCAAGGCTCTCTTTTTCATATGCTGAGCGATAGCTCCAATATGATCAGCATGTCCATGACTAATAAATATATGATCGGCAAAAACGAGTGGTCTAGGTGAAAATCCAATATCGAAACCGAATACTTGGCGATTCTTACGTACAGCAACGCAGGTTTCGTTTCCGGCAACCGACCAGCCAAAAATTTCAAATCCCCCAACTTTC                                                                                                                              ]
[-] EMBL CD077888             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               TTCATATGCTGAGCGATAGCTCCAATATGATCAGCATGTCCATGACTAATAAATATATGATCGGCAAAAACGAGTGGTCTAGGTGAAAATCCAATATCGAAACCGAATACTTGGCGATTCTTACGTACAGCAACGCAGGTTTCGTTTCCGGCAACCGACCAGCCAAAAATTTCAAATCCCCCAACTTTTTTGCGAAATTCAAGTCTCTTTAGATTACGGATGTCAAAAGTATTCTTAGTAATTTATATCGAGACTTTAGTGAGCAAATAGTAGCAGCGCGTAAACATAAACACGCCTCGTGCCGAATCTTGGCTC]




>consensus_9164#0
GGCATATCTTTGTGACAAAGACGGATGATATCATTATGAGTGTATCGATCTGAGAAGTGT
ATCAGGTAGATATAATCAACAGACTTTAGCAAAGAAGCATTCTGACGAATTTCATCCAAA
TGCGTATGACCATGACTTCTAGCGCTTTCAATCTTACGATCTGGATTATCTAAAAATGTT
GCCTCCATTATCAATAGGCGAGATGATAAAAGATCTGGGCAGAGTGAATTCGCTTCGCGA
ATAATAGTAAATCTAGAATCACCTAAATAAGCTATTTCCGGAACTTCCTTGCCACTAGGA
TCTCGAGAATAAAGTAAATAACCCACACTAGTAATCGAGTGATCAGTTGAAAAAACAACT
ACATGCCAATCATCCGACAACTCATATTTATTTCCCGGTTCAACAGGAACAAAGGTACCG
ACAAAGTCTGAGTCAGCTTTTTCAGACATAGCAGTGAAAGCATCGCAAATAGCCTTCACA
TGTGGGACCAGATGCTTTGGCATGAAATATGTCGCTCTTCTTAGATTATTCAAGGCCCTC
TNTTTCATATGCTGAGCGATAGCTCCAATATGATCAGCATGTCCATGACTAATAAATATA
TGATCGGCAAAAACGAGTGGTCTAGGTGAAAATCCAATATCGAAACCGAATACTTGGCGA
TTCTTACGTACAGCAACGCAGGTTTCGTTTCCGGCAACCGACCAGCCAAAAATTTCAAAT
CCCCCAACTTTCTTGCGAAATTCAAGTCTCTTTAGATTACGGATGTCAAAAGTATTCTTA
GTAATTTATATCGAGACTTTAGTGAGCAAATAGTAGCAGCGCGTAAACATAAACACGCCT
CGTGCCGAATCTTGGCTC

consensusID : consensus_9164#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 506
fasta sequence

                              [AGCGATAGCTCCAATATGATCAGCATGTCCATGACTAGAAACTGTTAACTTCACTATTCACTTACCTAATAAATATATGATCGGCAAAAACGAGTGGTCTAGGTGAAAATCCAATATCGAAACCGAATACTTGGCGATTCTTACGTACAGCAACGCAGGTTTCGTTTCCGGCAACCGACCAGCCAAAAATTTCAAATCCCCCAACTTTCTGGAAACTCATACCTAGGTAAACTTTTATACATGACTGCAATATACGTAAAATTATTGAAAGCATATAAATTCCGGTACATTAGGGCACTAAAAACGTGCCGCATAAATAATAATTGAACAGGAACAATGTTTAATAGGAAATACATTAGAGCCAGAAACAGCCAATAAAGCCCTTTTTCAGATAAGTGTTCGCGACTAGCTTTTATCTTACATTGCATCTGATAACATCAAGCTATGTGAAATAAGTGATTGCATTTCAGGACCTTACACCAGAAACATAAGATAAGTAAGAAAGC]

[-] EMBL CD185598             [AGCGATAGCTCCAATATGATCAGCATGTCCATGACTAGAAACTGTTAACTTCACTATTCACTTACCTAATAAATATATGATCGGCAAAAACGAGTGGTCTAGGTGAAAATCCAATATCGAAACCGAATACTTGGCGATTCTTACGTACAGCAACGCAGGTTTCGTTTCCGGCAACCGACCAGCCAAAAATTTCAAATCCCCCAACTTTCTGGAAACTCATACCTAGGTAAACTTTTATACATGACTGCAATATACGTAAAATTATTGAAAGCATATAAATTCCGGTACATTAGGGCACTAAAAACGTGCCGCATAAATAATAATTGAACAGGAACAATGTTTAATAGGAAATACATTAGAGCCAGAAACAGCCAATAAAGCCCTTTTTCAGATAAGTGTTCGCGACTAGCTTTTATCTTACATTGCATCTGATAACATCAAGCTATGTGAAATAAGTGATTGCATTTCAGGACCTTACACCAGAAACATAAGATAAGTAAGAAAGC]




>consensus_9164#1
AGCGATAGCTCCAATATGATCAGCATGTCCATGACTAGAAACTGTTAACTTCACTATTCA
CTTACCTAATAAATATATGATCGGCAAAAACGAGTGGTCTAGGTGAAAATCCAATATCGA
AACCGAATACTTGGCGATTCTTACGTACAGCAACGCAGGTTTCGTTTCCGGCAACCGACC
AGCCAAAAATTTCAAATCCCCCAACTTTCTGGAAACTCATACCTAGGTAAACTTTTATAC
ATGACTGCAATATACGTAAAATTATTGAAAGCATATAAATTCCGGTACATTAGGGCACTA
AAAACGTGCCGCATAAATAATAATTGAACAGGAACAATGTTTAATAGGAAATACATTAGA
GCCAGAAACAGCCAATAAAGCCCTTTTTCAGATAAGTGTTCGCGACTAGCTTTTATCTTA
CATTGCATCTGATAACATCAAGCTATGTGAAATAAGTGATTGCATTTCAGGACCTTACAC
CAGAAACATAAGATAAGTAAGAAAGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9164#0      GGCATATCTTTGTGACAAAGACGGATGATATCATTATGAGTGTATCGATCTGAGAAGTGT 60
consensus_9164#1      ------------------------------------------------------------
                                                                                  

consensus_9164#0      ATCAGGTAGATATAATCAACAGACTTTAGCAAAGAAGCATTCTGACGAATTTCATCCAAA 120
consensus_9164#1      ------------------------------------------------------------
                                                                                  

consensus_9164#0      TGCGTATGACCATGACTTCTAGCGCTTTCAATCTTACGATCTGGATTATCTAAAAATGTT 180
consensus_9164#1      ------------------------------------------------------------
                                                                                  

consensus_9164#0      GCCTCCATTATCAATAGGCGAGATGATAAAAGATCTGGGCAGAGTGAATTCGCTTCGCGA 240
consensus_9164#1      ------------------------------------------------------------
                                                                                  

consensus_9164#0      ATAATAGTAAATCTAGAATCACCTAAATAAGCTATTTCCGGAACTTCCTTGCCACTAGGA 300
consensus_9164#1      -----------------------------------------------------AGCGATA 7
                                                                           *     *

consensus_9164#0      TCTCGAGAATAAAGTAAATAACCCACACTAGTAATCGAGTGATCAGTTGAAAAAACAACT 360
consensus_9164#1      GCTCCAATATGATCAGCATGTCCATGACTAGAAAC----TGTTAACTTCACTATTCACTT 63
                       *** *  ** *     **  **   ***** **     ** * * ** *  *  **  *

consensus_9164#0      ACATGCCAATCATCCGACAACTCATATTTATTTCCCGGTTCAACAGGAACAAAGGTACCG 420
consensus_9164#1      ACCTAATAAATATATGATCGGCAAAAACGAGT----GGTCTAGGTGAAAATCCAATATCG 119
                      ** *   **  **  **      * *   * *    ***  *   * **      ** **

consensus_9164#0      ACAAAGTCTGAGTCAGCTTTTTCAGACATAGCAGTGAAAGCATCGCAAATAGCCTTCACA 480
consensus_9164#1      AAACCGAATACTTGGCGATTCTTACGTACAGCAACGCAGGTTTCG----TTTCCGGCAAC 175
                      * *  *  *   *     ** * *   * ****  * * *  ***    *  **  **  

consensus_9164#0      TGTGGGACCAGATGCTTTGGCATGAAATATGTCGCTCTTCTTAGA--TTAT-TCAAGGCC 537
consensus_9164#1      CGACCAGCCAAAAATTTC------AAATCCCCCAACTTTCTGGAAACTCATACCTAGGTA 229
                       *     *** *   **       ****    *    ****   *  * **  * ***  

consensus_9164#0      CTCTNTTTCATATGCTGAGCGATAGCTCCAATATGATCAGCATGTCCATGACTAATAA-A 596
consensus_9164#1      AACTTTTATACATGACT-GCAATATACGTAAAATTATT-GAAAGCATATAAATTCCGGTA 287
                        ** **  * ***    ** ***     ** ** **  * * *   ** * *      *

consensus_9164#0      TATATGATCGGCAAAAACGAGTGGTCTAGGTGAAAATCCAATATCGAAACCGAATACTTG 656
consensus_9164#1      CATTAGGGCACTAAAAACGTGCCGCATAAATAATAATTGAACAGGAACAATGTTTAATAG 347
                       **  *  *   ******* *  *  **  * * ***  ** *   * *  *  ** * *

consensus_9164#0      GCGATTCTT-------ACGTACAGCAACGCAGGTTTCGTTTCCGGCAACCGACCAGCCAA 709
consensus_9164#1      GAAATACATTAGAGCCAGAAACAGCCAATAAAGCCCTTTTTCAGATAAGTGTTCG--CGA 405
                      *  ** * *       *   ***** *   * *     **** *  **  *  *   * *

consensus_9164#0      AAATTTCAAATCCCCCAACTTTCTTGCGAAATTCAAGTCTCTTTAGATTACGGATGTCAA 769
consensus_9164#1      CTAGCTTTTATCTTACATTGCATCTGATAACATCAAGCTATGTGAAATAAGTGATTGCA- 464
                        *  *   ***   **       **  **  *****     * * ** *  ***  ** 

consensus_9164#0      AAGTATTCTTAGTAATTTATATCGAGACTTTAGTGAGCAAATAGTAGCAGCGCGTAAACA 829
consensus_9164#1      ------TTTCAGGACCTTACACCAGAAACATAA--GATAAGTAAGAA-AGC--------- 506
                            * * ** *  *** * *   *   **      ** **  *  ***         

consensus_9164#0      TAAACACGCCTCGTGCCGAATCTTGGCTC 858
consensus_9164#1      -----------------------------