These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9164#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 858 fasta sequence [GGCATATCTTTGTGACAAAGACGGATGATATCATTATGAGTGTATCGATCTGAGAAGTGTATCAGGTAGATATAATCAACAGACTTTAGCAAAGAAGCATTCTGACGAATTTCATCCAAATGCGTATGACCATGACTTCTAGCGCTTTCAATCTTACGATCTGGATTATCTAAAAATGTTGCCTCCATTATCAATAGGCGAGATGATAAAAGATCTGGGCAGAGTGAATTCGCTTCGCGAATAATAGTAAATCTAGAATCACCTAAATAAGCTATTTCCGGAACTTCCTTGCCACTAGGATCTCGAGAATAAAGTAAATAACCCACACTAGTAATCGAGTGATCAGTTGAAAAAACAACTACATGCCAATCATCCGACAACTCATATTTATTTCCCGGTTCAACAGGAACAAAGGTACCGACAAAGTCTGAGTCAGCTTTTTCAGACATAGCAGTGAAAGCATCGCAAATAGCCTTCACATGTGGGACCAGATGCTTTGGCATGAAATATGTCGCTCTTCTTAGATTATTCAAGGCCCTCTNTTTCATATGCTGAGCGATAGCTCCAATATGATCAGCATGTCCATGACTAATAAATATATGATCGGCAAAAACGAGTGGTCTAGGTGAAAATCCAATATCGAAACCGAATACTTGGCGATTCTTACGTACAGCAACGCAGGTTTCGTTTCCGGCAACCGACCAGCCAAAAATTTCAAATCCCCCAACTTTCTTGCGAAATTCAAGTCTCTTTAGATTACGGATGTCAAAAGTATTCTTAGTAATTTATATCGAGACTTTAGTGAGCAAATAGTAGCAGCGCGTAAACATAAACACGCCTCGTGCCGAATCTTGGCTC] [-] EMBL CD124641 [GGCATATCTTTGTGACAAAGACGGATGATATCATTATGAGTGTATCGATCTGAGAAGTGTATCAGGTAGATATAATCAACAGACTTTAGCAAAGAAGCATTCTGACGAATTTCATCCAAATGCGTATGACCATGACTTCTAGCGCTTTCAATCTTACGATCTGGATTATCTAAAAATGTTGCCTCCATTATCAATAGGCGAGATGATAAAAGATCTGGGCAGAGTGAATTCGCTTCGCGAATAATAGTAAATCTAGAATCACCTAAATAAGCTATTTCCGGAACTTCCTTGCCACTAGGATCTCGAGAATAAAGTAAATAACCCACACTAGT ] [+] EMBL CD124713 [ CCAAATGCGTATGACCATGACTTCTAGCGCTTTCAATCTTACGATCTGGATTATCTAAAAATGTTGCCTCCATTATCAATAGGCGAGATGATAAAAGATCTGGGCAGAGTGAATTCGCTTCGCGAATAATAGTAAATCTAGAATCACCTAAATAAGCTATTTCCGGAACTTCCTTGCCACTAGGATCTCGAGAATAAAGTAAATAACCCACACTAG ] [+] EMBL CD124808 [ CCAAATGCGTATGACCATGACTTCTAGCGCTTTCAATCTTACGATCTGGATTATCTAAAAATGTTGCCTCCATTATCAATAGGCGAGATGATAAAAGATCTGGGCAGAGTGAATTCGCTTCGCGAATAATAGTAAATCTAGAATCACCTAAATAAGCTATTTCCGGAACTTCCTTGCCACTAGGATCTCGAGAATAAAGTAAATAACCCACACTAG ] [+] EMBL CD124708 [ CCAAATGCGTATGACCATGACTTCTAGCGCTTTCAATCTTACGATCTGGTTTATCTAAAAATGTTGCCTCCATTATCAATAGGCGAGATGATAAAAGATCTGGGCAGAGTGAATTCGCTTCGCGAATAATAGTAAATCTAGAATCACCTAAATAAGCTATTTCCGGAACTTCCTTGCCACTAGGATCTCGAGAATAAAGTAAATAACCCACACTAG ] [+] EMBL CD187632 [ AAATGTTGCCTCCATTATCAATAGGCGAGATGATAAAAGATCTGGGCAGAGTGAATTCGCTTCGCGAATAATAGTAAATCTAGAATCACCTAAATAAGCTATTTCCGGAACTTCCTTGCCACTANGATCTCGAGAATAAAGTAAATAACCCACACTAGTAATCGAGTGATCAGTTGAAAAAACAACTACATGCCAATCATCCGACAACTCATATTTATTTCCCGGTTCAACAGGAACAAAGGTACCGACAAAGTCTGAGTCAGCTTTTTCAGACATAGCAGTGAAAGCATCGCAAATAGCCTTCACATGTGGGACCAGATGCTTTGGCATGAAATATGTCGCTCTTCTTAGATTATTCAAGGCCCTCTNTTTCATATGCTGAGCGATAGCTCCAATATGATCAGCATGT CTAATAAATATATGATCGGCAAAAACGAGTGGTCTAGGTGAAAATCCAATATCGAAAC ] [+] EMBL CD111272 [ ataaagtAAATAAC CCACA CAATCATCCGATAACTCATATTTATTTCCCGGTTCAACAGGAACAAAGGTACCGACAAAGTCTGAGTCAGCTTTTTCAGACATAGCAGTGAAAGCATCGCAAATAGCCTTCACATGTGGGACCAGATGCTTTGGCATGAAATATGTCGCTCTTCTTAGATTATTCAAGGCTCTCTTTTTCATATGCTGAGCGATAGCTCCAATATGATCAGCATGTCCATGACTAATAAATATATGATCGGCAAAAACGAGTGGTCTAGGTGAAAATCCAATATCGAAACCGAATACTTGGCGATTCTTACGTACAGCAACGCAGGTTTCGTTTCCGGCAACCGACCAGCCAAAAATTTCAAATCCCCCAACTTTC ] [-] EMBL CD077888 [ TTCATATGCTGAGCGATAGCTCCAATATGATCAGCATGTCCATGACTAATAAATATATGATCGGCAAAAACGAGTGGTCTAGGTGAAAATCCAATATCGAAACCGAATACTTGGCGATTCTTACGTACAGCAACGCAGGTTTCGTTTCCGGCAACCGACCAGCCAAAAATTTCAAATCCCCCAACTTTTTTGCGAAATTCAAGTCTCTTTAGATTACGGATGTCAAAAGTATTCTTAGTAATTTATATCGAGACTTTAGTGAGCAAATAGTAGCAGCGCGTAAACATAAACACGCCTCGTGCCGAATCTTGGCTC] consensusID : consensus_9164#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 506 fasta sequence [AGCGATAGCTCCAATATGATCAGCATGTCCATGACTAGAAACTGTTAACTTCACTATTCACTTACCTAATAAATATATGATCGGCAAAAACGAGTGGTCTAGGTGAAAATCCAATATCGAAACCGAATACTTGGCGATTCTTACGTACAGCAACGCAGGTTTCGTTTCCGGCAACCGACCAGCCAAAAATTTCAAATCCCCCAACTTTCTGGAAACTCATACCTAGGTAAACTTTTATACATGACTGCAATATACGTAAAATTATTGAAAGCATATAAATTCCGGTACATTAGGGCACTAAAAACGTGCCGCATAAATAATAATTGAACAGGAACAATGTTTAATAGGAAATACATTAGAGCCAGAAACAGCCAATAAAGCCCTTTTTCAGATAAGTGTTCGCGACTAGCTTTTATCTTACATTGCATCTGATAACATCAAGCTATGTGAAATAAGTGATTGCATTTCAGGACCTTACACCAGAAACATAAGATAAGTAAGAAAGC] [-] EMBL CD185598 [AGCGATAGCTCCAATATGATCAGCATGTCCATGACTAGAAACTGTTAACTTCACTATTCACTTACCTAATAAATATATGATCGGCAAAAACGAGTGGTCTAGGTGAAAATCCAATATCGAAACCGAATACTTGGCGATTCTTACGTACAGCAACGCAGGTTTCGTTTCCGGCAACCGACCAGCCAAAAATTTCAAATCCCCCAACTTTCTGGAAACTCATACCTAGGTAAACTTTTATACATGACTGCAATATACGTAAAATTATTGAAAGCATATAAATTCCGGTACATTAGGGCACTAAAAACGTGCCGCATAAATAATAATTGAACAGGAACAATGTTTAATAGGAAATACATTAGAGCCAGAAACAGCCAATAAAGCCCTTTTTCAGATAAGTGTTCGCGACTAGCTTTTATCTTACATTGCATCTGATAACATCAAGCTATGTGAAATAAGTGATTGCATTTCAGGACCTTACACCAGAAACATAAGATAAGTAAGAAAGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9164#0 GGCATATCTTTGTGACAAAGACGGATGATATCATTATGAGTGTATCGATCTGAGAAGTGT 60 consensus_9164#1 ------------------------------------------------------------ consensus_9164#0 ATCAGGTAGATATAATCAACAGACTTTAGCAAAGAAGCATTCTGACGAATTTCATCCAAA 120 consensus_9164#1 ------------------------------------------------------------ consensus_9164#0 TGCGTATGACCATGACTTCTAGCGCTTTCAATCTTACGATCTGGATTATCTAAAAATGTT 180 consensus_9164#1 ------------------------------------------------------------ consensus_9164#0 GCCTCCATTATCAATAGGCGAGATGATAAAAGATCTGGGCAGAGTGAATTCGCTTCGCGA 240 consensus_9164#1 ------------------------------------------------------------ consensus_9164#0 ATAATAGTAAATCTAGAATCACCTAAATAAGCTATTTCCGGAACTTCCTTGCCACTAGGA 300 consensus_9164#1 -----------------------------------------------------AGCGATA 7 * * consensus_9164#0 TCTCGAGAATAAAGTAAATAACCCACACTAGTAATCGAGTGATCAGTTGAAAAAACAACT 360 consensus_9164#1 GCTCCAATATGATCAGCATGTCCATGACTAGAAAC----TGTTAACTTCACTATTCACTT 63 *** * ** * ** ** ***** ** ** * * ** * * ** * consensus_9164#0 ACATGCCAATCATCCGACAACTCATATTTATTTCCCGGTTCAACAGGAACAAAGGTACCG 420 consensus_9164#1 ACCTAATAAATATATGATCGGCAAAAACGAGT----GGTCTAGGTGAAAATCCAATATCG 119 ** * ** ** ** * * * * *** * * ** ** ** consensus_9164#0 ACAAAGTCTGAGTCAGCTTTTTCAGACATAGCAGTGAAAGCATCGCAAATAGCCTTCACA 480 consensus_9164#1 AAACCGAATACTTGGCGATTCTTACGTACAGCAACGCAGGTTTCG----TTTCCGGCAAC 175 * * * * * ** * * * **** * * * *** * ** ** consensus_9164#0 TGTGGGACCAGATGCTTTGGCATGAAATATGTCGCTCTTCTTAGA--TTAT-TCAAGGCC 537 consensus_9164#1 CGACCAGCCAAAAATTTC------AAATCCCCCAACTTTCTGGAAACTCATACCTAGGTA 229 * *** * ** **** * **** * * ** * *** consensus_9164#0 CTCTNTTTCATATGCTGAGCGATAGCTCCAATATGATCAGCATGTCCATGACTAATAA-A 596 consensus_9164#1 AACTTTTATACATGACT-GCAATATACGTAAAATTATT-GAAAGCATATAAATTCCGGTA 287 ** ** * *** ** *** ** ** ** * * * ** * * * consensus_9164#0 TATATGATCGGCAAAAACGAGTGGTCTAGGTGAAAATCCAATATCGAAACCGAATACTTG 656 consensus_9164#1 CATTAGGGCACTAAAAACGTGCCGCATAAATAATAATTGAACAGGAACAATGTTTAATAG 347 ** * * ******* * * ** * * *** ** * * * * ** * * consensus_9164#0 GCGATTCTT-------ACGTACAGCAACGCAGGTTTCGTTTCCGGCAACCGACCAGCCAA 709 consensus_9164#1 GAAATACATTAGAGCCAGAAACAGCCAATAAAGCCCTTTTTCAGATAAGTGTTCG--CGA 405 * ** * * * ***** * * * **** * ** * * * * consensus_9164#0 AAATTTCAAATCCCCCAACTTTCTTGCGAAATTCAAGTCTCTTTAGATTACGGATGTCAA 769 consensus_9164#1 CTAGCTTTTATCTTACATTGCATCTGATAACATCAAGCTATGTGAAATAAGTGATTGCA- 464 * * *** ** ** ** ***** * * ** * *** ** consensus_9164#0 AAGTATTCTTAGTAATTTATATCGAGACTTTAGTGAGCAAATAGTAGCAGCGCGTAAACA 829 consensus_9164#1 ------TTTCAGGACCTTACACCAGAAACATAA--GATAAGTAAGAA-AGC--------- 506 * * ** * *** * * * ** ** ** * *** consensus_9164#0 TAAACACGCCTCGTGCCGAATCTTGGCTC 858 consensus_9164#1 ----------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||