These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9166#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 604 fasta sequence [GACAAAGTCATCTGAAGGCACTCGTAAGAGAAAAAAACGGAGGAAAGATGGTCCTCATAAATCTGCTTCTCAATCTAGGTGTAAATATTATATGGATGGTCGTTGTAGCAAGGGGGGTTCTTGCCCATTTCTTCATGATTTTACACCAGCAAAGAAAAATGAACTGTGCAAGTTTTATGCTGTTGGTATGTGTTCCAAAGAGTCTGCGTGTTCGTTTTTACATGGTGAATTTCCGTGCAAGTTCTTCCATCTGACGAATGATTGCCATCATGGTAGTGACTGCAAGTTTTCACACGCTCCTCTAACAGAATTCACACGCTCTTTGTTAGAAAAAATATCCTCAAAGGTTAGCTTAACATTTATTGTCAACCAACTTTCATCAGCATAGCGTTGATCGCTGTTCTAAACCCGGGCTTGTACGACAACATGACTCGAAACCCTTTATGAGTTGGCGTCCGAGAAACGATGATCATGGTGACGTTGATTACAGATTTGACCAGAATCTCCCACAAATGAATATATCATCTGAAAAAGAACTTGCTACTCCTGGTTTCAGCCCTCAACGTATGCCAGTTTTAACGCCGAATCTTTTTGCTCCTGTCTG] [+] EMBL CD152245 [GACAAAGTCATCTGAAGGCACTCGTAAGAGAAAAAAACGGAGGAAAGATGGTCCTCATAAATCTGCTTCTCAATCTAGGTGTAAATATTATATGGATGGTCGTTGTAGCAAGGGGGGTTCTTGCCCATTTCTTCATGATTTTACACCAGCAAAGAAAAATGAACTGTGCAAGTTTCATGCTGTTGGTATGTGTTCCAAAGAGTCTGCGTGTTCGTTTTTACATGGTGAATTTCCGTGCAAGTTCTTCCATCTGACGAATGATTGCCATCATGGTAGTGACTGCAAGTTTTCACACGCTCCTCTAACAGAATTCACACGCTCTTTGTTAGAAAAAATATCCTCAAAGGTTAGCTTAACATTTATTGTCAACCAACTTTCATCAGCATAGCGTTGATCGCTGTTCTAAACCCGGGCTTGTACGACAACATGACTCGAAACCCTTTATGAGTTGGCGTCCGAGAA ] [+] EMBL CD152332 [GACAAAGTCATCTGAAGGCACTCGTAAGAGAAAAAAACGGAGGAAAGATGGTCCTCATAAATCTGCTTCTCAATCTAGGTGTAAATATTATATGGATGGTCGTTGTAGCAAGGGGGGTTCTTGCCCATTTCTTCATGATTTTACACCAGCAAAGAAAAATGAACTGTGCAAGTTTTATGCTGTTGGTATGTGTTCCAAAGAGTCTGCGTGTTCGTTTTTACATGGTGAATTTCCGTGCAAGTTCTTCCATCTGACGAATGATTGCCATCATGGTAGTGACTGCAAGTTTTCACACGCTCCTCTAACAGAATTCACACGCTCTTTGTTAGAAAAAATATCCTCAAAGGTTAGCTTAACATTTATTGTCAACCAACTTTCATCAGCATAGCGTTGATCGCTGTTCTAAAACCGGGCTTGTACGACAACATGACTCGAAACCCTTTATGAG TGGCc ] [-] EMBL CD152238 [ TTTCTTCATGATTTTACACCAGCAAAGAAAAATGAACCGTGCAAGTTTTATGCTGTTGGTATGTGTTCCAAAGAGTCTGCGTGTTCGTTTTTACATGGTGAATTTCCGTGCAAGTTCTTCCATCTGACGAATGATTGCCATCATGGTAGTGACTGCAAGTTTTCACACGCTCCTCTAACAGAATTCACACGCTCTTTGTTAGAAAAAATATCCTCAAAGGTTAGCTTAACATTTATTGTCAACCAACTTTCATCAGCATAGCGTTGATCGCTGTTCTAAACCCGGGCTTGTACGACAACATGACTCGAAACCCTTTATGAGTGGCCGTCCGAGAAACGATGATCATGGTGACGTTGATTACAGATTTGACCAGAATCTCCCACAAATGAATATATCATCTGAAAAAGAACTTGCTACTCCTGGTTTCAGCCCTCAACGTATGCCAGTTTTAACGCCGAATCTTTTTGCTCCTGTCTG] consensusID : consensus_9166#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 492 fasta sequence [GTTCCATCTGACGAATGATTGCCATCATGGTAGTGACTGCAAGTTTTCACACGCTCCTCTAACAGAATTCACACGCTCTTTGTTAGAAAAAATATCCTCAAAGCATAGCGTTGATCGCTGTTCTAAACCCGGGCTTGTACGACAACATGACTCGAAGCCCTTTATGAGTGGCCGTCCGAGAAACGATGATCATGGTGACGTTGATTACAGATTTGACCAGAATCTCCCACAAATGAATATATCATCTGAAAAAGAACTTGCTACTCCTGGT-TTCAGCCCTCAACGTATGCCAGTTTTAACGCCGAATCTTTTTGCTCCTGTCTGCACTCCTAGTCCTCGTCACTTCCGCCCAGAGCACGAAATTTCACGCGCTAGGGGAATGCGTCCGTTCAATATGGTTCCTGGTGAGCAGATGCCTCAAACTGTGTATCCCAAAAATGACCGGTGTTTCCCTTCACCGGTGCCTTACGGCTCTGTACCATTTCAGTCTCA] [-] EMBL CD117215 [GTTCCATCTGACGAATGATTGCCATCATGGTAGTGACTGCAAGTTTTCACACGCTCCTCTAACAGAATTCACACGCTCTTTGTTAGAAAAAATATCCTCAAAGCATAGCGTTGATCGCTGTTCTAAACCCGGGCTTGTACGACAACATGACTCGAAGCCCTTTATGAGTGGCCGTCCGAGAAACGATGATCATGGTGACGTTGATTACAGATTTGACCAGAATCTCCCACAAATGAATATATCATCTGAAAAAGAACTTGCTACTCCTGGT TTCAGCCCTCAACGTATGCCAGTTTTAACGCCGAATCTTTTTGCTCCTGTCTGCACTCCTAGTCCTCGTCACTTCCGCCCAGAGCACGAAATTTCACGCGCTAGGGGAATGCGTCCGTTCAATATGGTTCCTGGTGAGCAGATGCCTCAAACTGTGTATCCCAAAAATGACCGGTGTTTCCCTTCACCGGTGCCTTACGGCTCTGTACCATTTCAGTCTCA] [-] EMBL CD117243 [ GAATGATTGCCATCATGGTAGTGACTGCAAGTTTTCACACGCTCCTCTAACAGAATTCACACGCTCTTTGTTAGAAAAAATATCCTCAAAGCATAGCGTTGATCGCTGTTCTAAACCCGGGCTTGTACGACAACATGACTCGAAGCCCTTTATGAGTGGCCGTCCGAGAAACGATGATCATGGTGACGTTGATTACAGATTTGACCAGAATCTCCCACAAATGAATATATCATCTGAAAAAGAACTTGCTACTCCTGGT TTCAGCCCTCAACGTATGCCAGTTTTAACGCCGAATCTTTTTGCTCCTGTCTGCACTCCTAGTCCTCGTCACTTCCGCCCAGAGCACGAAATTTCACGCGCTAGGGGAATGCGTCCGTTCAATATGGTTCCTGGTGAGCAGATGCCTCAAACTGTGTATCCCAAAAATGACCGGTGTTTCCCTTCACCGGTGCCTTACGGCTCTGTACCATTTCAGTCTCA] [+] EMBL CD114450 [ AGTTTTCACACGCTCCTCTAACAGAATTCACACGCTCTTTGTTAGAAAAAATATCCTCAAAGCATAGCGTTGATCGTTGTTCTAAACCCGGGCTTGTACGACAGCATGACTCGAAACCCTTTATGAGTGGCCGTCCGAGAAACGATGATCATGGTGACGTGGATTACAGATTTGACCAGAATCTCCCACAAATGAATATATCATCTGAAAAAGAACTTGCTACTCCTGGTGTTCAGCCCTCAACGTATGCCAGTTTTAACGCCGAATCTTTTTGCTCCTGTCTGCACTCCTAGTCCTCGTCACTTCCGCCCAGAGCACCAAATTTCACGCGCTAGGGGAATGCGTNCGct ] [+] EMBL CD118362 [ ACACGCTCCTCTAACAGAATTCACACGCTCTTTGTTAGAAAAAATATCTTCAAAGCATAGCGTTGATCGCTGTTCTAAACCCGGGCTTGTACGACAACATGACTCGAAACCCTTTATGAGTGGCCGTCCGAGAAACGATGATCATGGTGACGTTGATTACAGATTTGACCAGAATCTCCCACAAATGAATATATCATCTGAAAAAGAACTTGCTACTCCTGGT TTCAGCCCTCAACGTATGCCAGTTTTAACGCCGAATCTTTTTGCT ] consensusID : consensus_9166#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 139 fasta sequence [TACTGTAATCAGACGTCGCCATGATCATCGTTTATGGGCCGGCCACTCATAAAGGGTTTCGAGTCATGTTGTCGTACAAGCCCGGTGTTTAGAACAGCGCTCTACGATATGCTTTGAGGATATTTTTTCTAACAAACAG] [-] EMBL CD146928 [TACTGTAATCAGACGTCGCCATGATCATCGTTTATGGGCCGGCCACTCATAAAGGGTTTCGAGTCATGTTGTCGTACAAGCCCGGTGTTTAGAACAGCGCTCTACGATATGCTTTGAGGATATTTTTTCTAACAAACAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9166#0 GACAAAGTCATCTGAAGGCACTCGTAAGAGAAAAAAACGGAGGAAAGATGGTCCTCATAA 60 consensus_9166#1 ------------------------------------------------------------ consensus_9166#2 ------------------------------------------------------------ consensus_9166#0 ATCTGCTTCTCAATCTAGGTGTAAATATTATATGGATGGTCGTTGTAGCAAGGGGGGTTC 120 consensus_9166#1 ------------------------------------------------------------ consensus_9166#2 ------------------------------------------------------------ consensus_9166#0 TTGCCCATTTCTTCATGATTTTACACCAGCAAAGAAAAATGAACTGTGCAAGTTTTATGC 180 consensus_9166#1 ------------------------------------------------------------ consensus_9166#2 ------------------------------------------------------------ consensus_9166#0 TGTTGGTATGTGTTCCAAAGAGTCTGCGTGTTCGTTTTTACATGGTGAATTTCCGTGCAA 240 consensus_9166#1 ------------------------------------------------------------ consensus_9166#2 ------------------------------------------------------------ consensus_9166#0 GTTCTTCCATCTGACGAATGATTGCCATCATGGTAGTGACTGCAAGTTTTCACACGCTCC 300 consensus_9166#1 ---GTTCCATCTGACGAATGATTGCCATCATGGTAGTGACTGCAAGTTTTCACACGCTCC 57 consensus_9166#2 ------------------------------------------------------------ consensus_9166#0 TCTAACAGAATTCACACGCTCTTTGTTAGAAAAAATATCCTCAAAGGTTAGCTTAACATT 360 consensus_9166#1 TCTAACAGAATTCACACGCTCTTTGTTAGAAAAAATATCCTCAAAG-------------- 103 consensus_9166#2 ------------------------------------------------------------ consensus_9166#0 TATTGTCAACCAACTTTCATCAGCATAGCGTTGATCGCTGTTCTAAACCCGGGCTTGTAC 420 consensus_9166#1 -----------------------CATAGCGTTGATCGCTGTTCTAAACCCGGGCTTGTAC 140 consensus_9166#2 ----------------------------------------------TACTGTAATCAGAC 14 * * * ** consensus_9166#0 GACAACATGACTCGAAACCCTTTATGAGTTGGCGTCCGAGAAACGATGATCATGGTGACG 480 consensus_9166#1 GACAACATGACTCGAAGCCCTTTATGAGTGGCCGTCCGAGAAACGATGATCATGGTGACG 200 consensus_9166#2 GTCGCCATGATC----ATCGTTTATGGGCCGGCCACTCATAAAGGGT--TTCGAGTCATG 68 * * ***** * ****** * * * * * *** * * * ** * * consensus_9166#0 TTGATTACAGATTTGACCAGAATCTCCCACAAATGAATATATCATCTGAAAAAGAACTTG 540 consensus_9166#1 TTGATTACAGATTTGACCAGAATCTCCCACAAATGAATATATCATCTGAAAAAGAACTTG 260 consensus_9166#2 TTGT---CGTACAAGCCCGGTGTTTAGAACAGCGCTCTACGATATGCTTTGAGGATATTT 125 *** * * * ** * * * *** ** ** * ** ** consensus_9166#0 CTACTCCTGGTTTCAGCCCTCAACGTATGCCAGTTTTAACGCCGAATCTTTTTGCTCCTG 600 consensus_9166#1 CTACTCCTGGTTTCAGCCCTCAACGTATGCCAGTTTTAACGCCGAATCTTTTTGCTCCTG 320 consensus_9166#2 TTTCTAACAAA--CAG-------------------------------------------- 139 * ** *** consensus_9166#0 TCTG-------------------------------------------------------- 604 consensus_9166#1 TCTGCACTCCTAGTCCTCGTCACTTCCGCCCAGAGCACGAAATTTCACGCGCTAGGGGAA 380 consensus_9166#2 ------------------------------------------------------------ consensus_9166#0 ------------------------------------------------------------ consensus_9166#1 TGCGTCCGTTCAATATGGTTCCTGGTGAGCAGATGCCTCAAACTGTGTATCCCAAAAATG 440 consensus_9166#2 ------------------------------------------------------------ consensus_9166#0 ---------------------------------------------------- consensus_9166#1 ACCGGTGTTTCCCTTCACCGGTGCCTTACGGCTCTGTACCATTTCAGTCTCA 492 consensus_9166#2 ---------------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||