These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9170#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 1001 fasta sequence [TCTGTTTCTGCAATCTAAAGAATTGGTAGTAGCCCAAACCACTGTTAATGTGTGGTATAGAAGCATTAGAAGAGGTGAAAAAGTTAGCTGAGGACGATTCTAAGTACGTTGCCTTAATAAATGACAAAACTACACTACATGGACTTGTCTTACTACTTTCGAAC-AAAAATAACACAATTGTTTCATCAGTGTTGGAAACGTTGAAAATTATATCTGGCCGACCAGGTGGCAACGATACTTTGCAATCATTATTGGGATTAAATGAACAGCTAAATGAACTAATAAAATCCACTGAATCTGGTGGTAGCGTAGCTGCTCAGTCCATTTCTAGGAGCGCTGAGGAACTTTTAGCTTTGCTTAACTGCTCCAATAGACAAGGTCCTCCCAGACCCATAAAAACCAATCCAGAAAAATCACACCGTACGTTCAGACCAAAGAATGTAGTTTTACAACTCAGAGGAATAACAGACGAGGATGAT-ATTGAAATAGTATGTGCAAAGCT-CTTGAAAATTCGCGGCGTAGTCAGTATAACATTCCAGTTTCAAAAACATCGTGTTATTGTTTGCACGGTACCTTCGTTAGACCCCGAATGCCTTATACATGCAGTATCTTCAGTTAAAAACAACTCGGGTCAGTCAAATGACACGTGTCAAACAGATTTGACCCGTCCTAACATCACAGCCCAGATAGTCAAGAAAAAACACAGAGCACAATCCTTATGCAGACACAGTTCATTCAGCGGTTCAAAATATAGGCAAAACTTGCGAAATACTGAAATCCCACCTTATTTAGAAGATGATGCTGATCTCTTCGAGGTTGATGAAACAAGAGCTGCTCCGAAATTAATGGATGCTCCAATCAAATCAGATTCTTCTAAAGGTCCTATTAGTTGGCTATCAGATTTCCTGGAAAAATCACTATTTTGGTGAATTTAGTACAATATTTCCTGTTTCATATGTTTTACATTTATGCTAGCTACTGTATTTAGAAATACAAACTTT] [-] EMBL CD141715 [TCTGTTTCTGCAATCTAAAGAATTGGTAGTAGCCCAAACCACTGTTAATGTGTGGTATAGAAGCATTAGAAGAGGTGAAAAAGTTAGCTGAGGACGATTCTAAGTACGTTGCCTTAATAAATGACAAAACTACACTACATGGACTTGTCTTACTACTTTCGAACAAAAAATAACACAATTGTTTCATCAGTGTTGGAAACGTTGAAAATTATATCTGGCCGACCAGGTGGCAACGATACTTTGCAATCATTATTGGGATTAAATGAACAGCTAAATGAACTAATAAAATCCACTGAATCTGGTGGTAGCGTAGCTGCTCAGTCCATTTCTAGGAGCGCTGAGGAACTTTTAGCTTTGCTTAACTGCTCCAATAGACAAGGTCCTCCCAGACCCATAAAAACCAATCCAGAAAAATCACACCGTACGTTCAGACCAAAGAATGTAGTTTTACAACTCAGAGGAATAACAGACGAGGATGAT ATTGAAATAGTATGTGCAAAGCTGCTTGAAAATTCGCGGCGTAGTCAGTATAACATTCCAGTTTCAAAAACATCGTGTTATCGGTTGCACGGTACATT ] [+] EMBL SMAA18473 [ TCTAAAGAATTGGTAGTAGCCCAAACCACTGTTAATGTGTGGTATAGAAGCATTAGAAGAGGTGAAAAAGTTAGCTGAGGACGATTCTAAGTACGTTGCCTTAATAAATGACAAAACTACACTACATGGACTTGTCTTACTACTTTCGAAC AAAAATAACACAATTGTTTCATCAGTGTTGGAAACGTTGAAAATTATATCTGGCCGACCAGGTGGCAACGATACTTTGCAATCATTATTGGGATTAAATGAACAGCTAAATGAACTAATAAAATCCACTGAATCTGGTGGTAGCGTA CTGCTCAGTCCATTTCTAGGAGCGCTGAGGAACTTTTAGCTTTGCTTAACTGCNCCAATAGACAAGGTCCTCCCAGACCCATAAAAACCA ] [+] EMBL CD078497 [ GAAAAAGTTAGCTGAGGACGATTCTAAGTACGTTGCCTTAATAAATGACAAAACTACACTACATGGACTTGTCTTACTACTTTCGAAC AAAAATAACACAATTGTTTCATCAGTGTTGGAAACGTTGAAAATTATATCTGGCCGACCAGGTGGCAACGATACTTTGCAATCATTATTGGGATTAAATGAACAGCTAAATGAACTAATAAAATCCACTGAATCTGGTGGTAGCGTAGCTGCTCAGTCCATTTCTAGGAGCGCTGAGGAACTTTTAGCTTTGCTTAACTGCTCCAATAGACAAGGTCCTCCCAGACCCATAAAAACCAATCCAGAAAAATCACACCGTACGTTCAGACCAAAGAATGTAGTTTTACAACTCAGAGGAATAACAGACGAGGATGAT ATTGAAATAGTATGTGCAAAGCT CTTGAAAATTCGCGGCGTAGTCAGTATAACATTCCAGTTTCAAAAACATCGTGTTATTGTTTGCACGGTACCTTCGTTAGACCCCGAATGCCTTATACATGCAGTATCTTCAGTTAAAAACAACTCGGGTCAGTCAAATGACACGTGTCAAACAGATTTGACCCGTCCTAACATCACAGCCCAGAT ] [-] EMBL CD141935 [ GGAAACGTTGAAAATTATATCTGGCCGACCAGGTGGCAACGATACTTTGCAATCATTATTGGGATTAAATGAACAGCTAAATGAACTAATAAAATCCACTGAATCTGGTGGTAGCGTAGCTGCTCAGTCCATTTCTAGGAGCGCTGGGGAACTTTTAGCTTTGCTTAACTGCTCCAATAGACAAGGTCCTCCCAGACCCATAAAAACCAATCCAGAAAAATCACACCGTACGTTCAGACCAAAGAATGTAGTTTTACAACTCAGAGGAATAACAGACGAGGATGAT ATTGAAATAGTATGTGCAAAGCT CTTGAAAATTCGCGGCGTAGTCAGTATAACATTCCAGTTTCAAAAACATCGTGTTATTGTTTGCACGGTACCTTCGTTAGACCCCGAATGCCTTATACATGCAGTATCTTCAGTTAAAAACAACTCGGGTCAGTCAAATGACACGTGTCAAACAGATTTGACCCGTCCTA ] [-] EMBL CD127026 [ CCCAGACCCATAAAAGCCAATCCAGAGAAATCACACCGTACGTTCAGACCAAAGAATGTAGTTTTACTATGCAGAGGAATAACAGAC ] [+] EMBL CD188081 [ CCAATCCAGAAAAATCACACCGTACGTTCAGACCAATGAATGTAGTTTTACAACTCAGAGGAATAACAGACGAGGATGATAATTGAAATAGTATGTGCAAAGCT CTTGAAAATTCGCGGC ] [-] EMBL CD072969 [ AAATTCGCGGCGTAGTCAGTATAACATTCCAGTTTCAAAAACATCGTGTTATTGTTTGCACGGTACCTTCGTTAGACCCCGAATGCCTTATACATGCAGTATCTTCAGTTAAAAACAACTCGGGTCAGTCAAATGACACGTGTCAAACAGATTTGACCCGTCCTACAATCACAGCCCAGATAGTCAAGAAAAAACACAGAGCACAATCCTTATGCAGACACAGTTCATTCAGCGGTTCAAAATATAGGCAAAACTTGCGAAATACTGAAATCCCACCTTATTTAGAAGATGATGCTGATCTCTTCGAGGTTGATGAAACAAGAGCTGCTCCGAAATTAATGGATGCTCCAATCAAATCAGATTCTTCTAAAGGTCCTATTAGTTGGCTATCAGATTTCCTGGAAAAATCACTATTTTGGTGAATTTAGTACAATATTTCCTGTTTCATATGTTTTACATTTATGCTAGCTACTGTATTTAGAAATACAAACTTT] [-] EMBL CD136176 [ TGGATGCTCCAATCAAATCAGATTCTTCTAAAGGTCCTATTAGTTGGCTATCAGATTTCCTGGAAAAATCACTATTTTGGTGAATTTAGTACAATATTTCCTGTTTCATATGTTTTAC ] clustalw multiple alignements is not computed in this case |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||