These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9200#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 539 fasta sequence [AACTTGCAATCCTATTCCCCGTAAATCTTCTGGTTCAGGACATAATCGATAAACTGTCTTTACTGCATATCGATAAAGGACTGTAGCGTCTGCTGTATGTTCAGTCATTTGTATAGTGTGATTGGTTATTGAACATAAACCATGACCCATATATTTTGAAGTCTGCACAGGGGCGTTAGGAAGTCGTAAGTATAATTTGATGGTTAGTGATTTTCCTACACAGCCTTCGTTCACTGAACTCATTTTGATATTTCGCATTCTAGAGCTCAATTCTTCGCATAGTGACTGTACTAAGGCTTCTAATTCAGATCGTGAGCTTAGTCGAATTCCGTAGTTCATTGATGCTGATACAGATTTATATTCCTTCTCGAATTGCAAACTATCCAAATCCTTTCCGCGACATGCCATGTAAACCCGATTACCAGTTTTCTTGCCCAGTAAACTTGTGATTTGATTGTGAGAGACTTTGGACATCAGTTGGCCGCATGTTTTGGCATCGAATGCTTGAAATATTTTACCTGCTAGGGATCTACCGATAT] [+] EMBL CD070988 [AACTTGCAATCCTATTCCCCGTAAATCTTCTGGTTCAGGACATAATCGATAAACTGTCTTTACTGCATATCGATAAAGGACTGTAGCGTCTGCTGTATGTTCAGTCATTCGTATAGTGTGATTGGTTATTGAACATAAACCATGACCCATATATTTTGAAGTCTGCACAGGGGCGTTAGGAAGTCGTAAGTATAATTTGATGGTTAGTGATTTTCCTACACAGCCTTCGTTCACTGAACTCATTTTGATATTTCGCATTCTAGAGCTCAATTCTTCGCATAGTGACTGTACTAAGGCTTCTAATTCAGATCGTGAGCTTAGTCGAATTCCGTAGTTCATTGATGCTGATACAGATTTATATTCCTTCTCGAATTGCAAACTATCCAAATCCTTTCCGCGACATGCCATGTAAACCCGATTACCAGTTTTCTTGCCCAGTAAACTTGTGATTTGATTGTGAGAGACTTTGGACATCAGTTGGCCGCATGTTTTGGCATCAAATGCTTGAAATATTTTACCTGCTAGGAATCTACCGATAT] [+] EMBL CD071007 [AACTTGCAATCCTATTCCCCGTAAATCTTCTGGTTCAGGACATAATCGATAAACTGTCTTTACTGCATATCGATAAAGGACTGTAGCGTCTGCTGTATGTTCAGTCATTTGTATAGTGTGATTGGTTATTGAACATAAACCATGACCCATATATTTTGAAGTCTGCACAGGGGCGTTAGGAAGTCGTAAGTATAATTTGATGGTTAGTGATTTTCCTACACAGCCTTCGTTCACTGAACTCATTTTGATATTTCGCATTCTAGAGCTCAATTCTTCGCATAGTGACTGTACTAAGGCTTCTAATTCAGATCGTGAGCTTAGTCGAATTCCGTAGTTCATTGATGCTGATACAGATTTATATTCCTTCTCGAATTGCAAACTATCCAAATCCTTTCCGCGACATGCCATGTAAACCCGATTACCAGTTTTCTTGCCCAGTAAACTTGTGATTTGATTGTGAGAGACTTTGGACATCAGTTGGCCGCATGTTTTGGCATCGAATGCTTGAAATATTTTACCTGCTAGGGATCTACCGATA ] [+] EMBL CD098069 [AACTTGCAATCCTATTCCCCGTAAATCTTCTGGTTCAGGACATAATCGATGAACTGTCTTTACTGCATATCGATAAAGGACTGTAGCGTCTGCTGTATGTTCAGTCATTTGTATAATGTGATTGGTTATTGAACATAAACCATGACCCATATATTTTGAAGTCCGCACAGGGGCGTTAGGAAGTCGTAAGTATAATTTGATGGTTAGTGATTTTCCTACACAGCCTTCGTTCACTGAACTCATTTTGATATTTCGCATTCTAGAGCTCAATTCTTCGCATAGTGACTGTACTAAGGCTTCTAATTCAGATCGTGAGCTTAGTCGAATTCCGTAGTTCATTGATGCTGATACAGATTTATATTCCTTCTCGAATTGCAAACTATCCAAATCCTTTCCGCGACATGCCATGTAAACCCGATTACCAGTTTTCTTGCCCAGTACACTTGTGATTTGATT ] [-] EMBL CD097931 [ ACTGTCTGTACTGCATATCGATAAAGGACTGTAGCGTCTGCTGTATGTTCAGTCATTTGTATAGTGTGATTGGTTATTGAACATAAACCATGACCCATATATTTTGAAGTCTGCACAGGGGCGTTAGGAAGTCGTAAGTATAATTTGATGGTTAGTGATTTTCCTACACAGCCTTCGTTCACTGAACTCATTTTGATATTTCGCATTCTAGAGCTCAATTCTTCGCATAGTGACTGTACTAAGGCTTCTAATTCAGATCGTGAGCTTAGTCGAATTCCGTAGTTCATTGATGCTGATACAGATTTATATTCCTTCTCGAATTGCAAACTATCCAAATCCTTTCCGCGACATGCCATGTAAACCCGATTACCAGTTTTCTTGCCCAGTAAACTTGTGATTTGATTGTGGGAGACTTTGGACATCAGCTGGCCGCATGTTTTGGCATCGAATGCTTGAAATATTTTACCTGCTAGGGATCTACCGATAT] [-] EMBL CD097948 [ TTACTGCATATCGATAAAGGACTGTAGCGTCTGCTGTATGTTCAGTCATTTGTATAGTGTGATTGGTTATTGAACATAAACCATGACCCATATATTTTGAAGTCTGCACAGGGGCGTTAGGAAGTCGTAAGTATAATTTGATGGTTAGCGATTTTCCTACACAGCCTTCGTTCACTGAACTCATTTTGATATTTCGCATTCTAGAGCTCAATTCTTCGCATAGTGACTGTACTAAGGCTTCTAATTCAGATCGTGAGCTTAGTCGAATTCCGTAGTTCATTGATGCTGATACAGATTTATATTCCTTCTCGAATTGCAAACTATCCAAATCCTTTCCGCGACATGCCATGTAAACCCGATTACCAGTTTTCTTGCCCAGTAAACTTGTGATTTGATTGTGAGAGACTTTGGACATCAGTTGGCCGCATGTTTTGGCATCGAATGCTTGAAATATTTTACCTGCTAGGGATCTACCGATAT] [-] EMBL CD097769 [ AGTCATTTGTATAGTGTGATTGGTTATTGAACATAAACCATGACCCATATATTTTGAAGTCTGCACAGGGGCGTTAGGAAGTCGTAAGTATAATTTGATGGTTAGTGATTTTCCTACACAGCCTTCGTTCACTGAACTCATTTTGATATTTCGCATTCTAGAGCTCAATTCTTCGCATAGTGACTGTACTAAGGCTTCTAATTCAGATCGTGAGCTTAGTCGAATTCCGTAGTTCATTGATGCTGATACAGATTTATATTCCTTCTCGAATTGCAAACTATCCAAATCCTTTCCGCGACATGCCATGTAAACCCGATTACCAGTTTTCTTGCCCAGTAAACTTGTGATTTGATTGTGAGAGACTTTGGACATCAGTTGGCCGCATGTTTTGGCATCGAATGCTTGAAATATTTTACCTGCTAGGGATCTACCGATAT] [-] EMBL CD070951 [ GATTTTCCTACACAGCCTTCGTTCACTGAACTCATTTTGATATTTCGCATTCTAGAGCTCAATTCTTCGCATGGTGACTGTACTAAGGCTTCTAATTCAGATCGTGAGCTTAGTCGAATTCCGTAGTTCATTGATGCTGATACAGATTTATATTCCTTCTCGAATTGCAAACTATCCAAATCCTTTCCGCGACATGCCATGTAAACCCGATTACCAGTTTTCTTGCCCAGTAAACTTGTGATTTGATTGTGAGAGACCTTGGACATCAGTTGGCCGCATGTTTTGGCATCGAATGCTTGAAATATTTTACCTGCTAGGGATCTACCGATAT] consensusID : consensus_9200#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 427 fasta sequence [AACTCACTCNCCGTAAATCTTCTGGTTCAGGACATAATCGATAAACTGTCTTTACTGCATATCGATAAAGGACTGTAGCGTCTGCTGTATGTTCAGTCATTTGTATAGTGTGATTGGTTATTGAACATAAACCATGACCTAAATTAGGAAGTGAGAAACGATTTATGCTCGCTTATCATATAATCACTTGAGATTGAAAAAATATGTTCAATGAATTAATTGATTTATAAGACACAAAATCGGGGTTTTGTTTCGTTTGTATTTTGTAGATAACATAAAGTCATTTCCATACTGTTTTTTACGCGAACGTGCATCGAGAAAAGCGTGTTCTGTGTATGGAAGTGCTAATATGGCGATATAAGATATGCGGTCCATTGCCCTGCACTAGACATTAAATAATTAGATCAGTAGGACAAAACTCAAAACT] [-] EMBL CD194312 [AACTCACTCNCCGTAAATCTTCTGGTTCAGGACATAATCGATAAACTGTCTTTACTGCATATCGATAAAGGACTGTAGCGTCTGCTGTATGTTCAGTCATTTGTATAGTGTGATTGGTTATTGAACATAAACCATGACCTAAATTAGGAAGTGAGAAACGATTTATGCTCGCTTATCATATAATCACTTGAGATTGAAAAAATATGTTCAATGAATTAATTGATTTATAAGACACAAAATCGGGGTTTTGTTTCGTTTGTATTTTGTAGATAACATAAAGTCATTTCCATACTGTTTTTTACGCGAACGTGCATCGAGAAAAGCGTGTTCTGTGTATGGAAGTGCTAATATGGCGATATAAGATATGCGGTCCATTGCCCTGCACTAGACATTAAATAATTAGATCAGTAGGACAAAACTCAAAACT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9200#0 AACTTGCAATCCTATTCCCCGTAAATCTTCTGGTTCAGGACATAATCGATAAACTGTCTT 60 consensus_9200#1 --------AACTCACTCNCCGTAAATCTTCTGGTTCAGGACATAATCGATAAACTGTCTT 52 * * * ** ****************************************** consensus_9200#0 TACTGCATATCGATAAAGGACTGTAGCGTCTGCTGTATGTTCAGTCATTTGTATAGTGTG 120 consensus_9200#1 TACTGCATATCGATAAAGGACTGTAGCGTCTGCTGTATGTTCAGTCATTTGTATAGTGTG 112 ************************************************************ consensus_9200#0 ATTGGTTATTGAACATAAACCATGACCCATATATTTTGAAGTCTGCACAGGGGCGTTAGG 180 consensus_9200#1 ATTGGTTATTGAACATAAACCATGACC--TAAATTAGGAAGT-----GAGAAACGATTTA 165 *************************** ** *** ***** ** ** * consensus_9200#0 AAGTCGTAAGTATAATTTGATGGTTAGTGATTTTCCTACACAGCCTTCGTTCACTGAACT 240 consensus_9200#1 TGCTCGCT--TATCATATAATCACTTGAGATT------GAAAAAATATGTTCAATGAATT 217 *** *** ** * ** * * **** * * * ***** **** * consensus_9200#0 CATTTTGATATTTCGCATTCTAGAGCTCAATTCTTCGCATAGTGACTGTACTAAGGCTTC 300 consensus_9200#1 AAT--TGATTTATAAGACACAAAA--TCGGGGTTTTGTTTCGT--TTGTATT-----TTG 266 ** **** * * * * * * ** ** * * ** **** * ** consensus_9200#0 TAATTCAGATCGTGAGCTTAGTCGAATTCCGTAGTTCATTGATGCTGATACAGATTTATA 360 consensus_9200#1 TAG---ATAACATAAAGTCATTTCCATACTGTTTTTTACGCGAACGTGCATCGAGAAAAG 323 ** * * * * * * * * ** * ** ** * * * ** * consensus_9200#0 TTCCTTCTCGAATTGCAAACTATCCAAATCCTTTCCGCGACATGCCATGTAAACCCGATT 420 consensus_9200#1 CGTGTTCT-GTGTATGGAAGTGCTAATAT------GGCGATATAAGATATGCGGTCCATT 376 **** * * ** * * ** **** ** ** * * *** consensus_9200#0 ACCAGTTTTCTTGCCCAGTAAACTTGTGATTTGATTGTGAGAGACTTTGGACATCAGTTG 480 consensus_9200#1 GCC--CTGCACTAGACATTAAATAATTAGATCAGTAGGACAAAACTCAAAACT------- 427 ** * * ** **** * * * * * *** ** consensus_9200#0 GCCGCATGTTTTGGCATCGAATGCTTGAAATATTTTACCTGCTAGGGATCTACCGATAT 539 consensus_9200#1 ----------------------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||