These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9203#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 722 fasta sequence [TCCAGGCCAANAATTCGGCACGAGGAGCGTTACTGCCCATGT-TGCCGAAATAAATTGCCTGGTTTGATATCGAATCACTATGGATACAGTCCTATTGAGTGATCTTGAACGGTTCTACTTAGTACAAGGAGTTGAAGTGGGATGTAGAATGGATGGTCGTGGGCCAAGTGAATATCGACCTTTAGAAATCGAAACTAATATTTTGAGTCATGCAACTGGTTCAGCTAGGTGAAACTTTCATCGTTTGCTGTGTTAAAATGGAGGTTGGCAAACCTTCTTTAACTAACACTAGTGAAGGTCGTATTGAAATAAATGTTGAGTGGTGAGTGAAAGGTATTCATCTTCAAATAATATATAACTTTGTAACGTATATTTAATGTTTTGTGTCAACATATGCTTTCAATATCCCATATATCTCATCTGTATCATTACGTACATTTTTTTACAAAACTGACGATTTGTACAAAATCTTTCTCAGTTACCCTACGGCAACTCACCGCTGTAACGAAAAGGCAGCATCCGAACTGGAGGAACGTTTGAAGACAACATTGCAATCAGCCTATCAATTGAAGTTTATAGATCTAAGCCCTCTGTGTATCCAACGTGGTCGACAGTGCTGGGTCATCTATATTGATCTGCTTGTCAGTTTTTATCATACTTAGTTATTTTTCCCAGATTTTAGAGGGTGCTGGNAACTTACTTGATGCTTCCTNCTTGGTAGT] [+] EMBL CD079828 [TCCAGGCCAANAATTCGGCACGAGGAGCGTTACTGCCCATGT TGCCGAAATAAATTGCCTGGTTTGATATCGAATCACTATGGATACAGTCCTATTGAGTGATCTTGAACGGTTCTACTTAGTACAAGGAGTTGAAGTGGGATGTAGAATGGATGGTCGTGGGCCAAGTGAATATCGACCTTTAGAAATCGAAACTAATATTTTGAGTCATGCAACTGGTTCAGCTAGGTGAAACTTTCATCGTTTGCTGTGTTAAAATGGAGGTTGGCAAACCTTCTTTAACTAACACTAGTGAAGGTCGTATTGAAATAAATGTTGAGTGGTGAGTGAAAGGTATTCATCTTCAAATAATATATAACTTTGTAACGTATATTTAATGTTTTGTGTCAACATATGCTTTCAATATCCCATATATCTCATCTGTATCATTACGTACATTTTTTTACAAAACTGACGATTTGTACAAAATCTTTCTCAGTTACCCTACGGCAACTCACCGCTGTAACGAAAAGGCAGCATCCGAACTGGAGGAACGTTTGAAGACAACATTGCAATCAGCCTATCAATTGAAGTTTATAGATCTAAGCCCTCTGTGTATCCAACGTGGTCGACAGTGCTGGGTCATCTATATTGATCTGCTTGTCAGTTTTTATCATACTTAGTTATTTTTCCCAGATTTTAGAGGGTGCTGGNAACTTACTTGATGCTTCCTNCTTGGTAGT] [+] EMBL CD079236 [ AGCGTTACTGCCCATGTATGCCGAAATAAATTGCCTGGTTTGATATCGAATCACTATGGATACAGTCCTATTGAGTGATCTTGAACGGTTCTACTTAGTACAAGGAGTTGAGGTGGGATGTAGAATGGATGGTCGTGGGCCAAGTGAATATCGACCTTTAGAAATCGAAACTAATATTTTGAGTCATGCAACTGGTTCAGCTAGGTGAAACTTTCATCGTTTGCTGTGTTAAAATGGAGGTTGGCAAACCTTCTTTAACTAACACTAGTGAAGGTCGTATTGAAATAAATGTTGAGTGGTGAGTGAAAGGTATTCATCTTCAAATAATATATAACTTTGTAACGTATATTTAATGTTTTGTGTCAACATATGCTTTCAATATCCCATATATCTCATCTGTATCATTACGTACATTTTTTTACAAAACTGACGATTTGTACAAAATCTTTCTCAGTTACCCTACGGCAACTCACCGCTGTAACGAAAAGGCAGCATCCGAACTGGAGGAACGTTTGAAGACAACATTGCAATCAGCCTATCAATTGAAGTTTATAGATCTAAGCCCTCTGTGT ] consensusID : consensus_9203#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 555 fasta sequence [AAAAATGGCGGGGTTGATATTGAATCCCTATGGATCCAGTCCTATTAAGTGTTTTGAACGGTTTTATTTAGACCAAGGAGTTGAATTGGGATGTAAAATGGATGTTCGTGGGCCAAGTAAATATCGACCTTTAGAAATCGAAACTAATATTTTGAGTCATGCAACTGGTTCAGCTAGTATTCGTATTGGTGAAACTTTCATCGTTTGCTGTGTTAAAATGGAGGTTGGCAAACCTTCTTTAACTAACACTAGTGAAGGTCGTATTGAAATAGATGTTGAGTGTTACCCTAC-GGCAACTCACCGCTGTAACGAAAAGGCAGCATCCGAACTGGAGGAACGTTTGAAGACAACATTGCAATCAGCCTATCAATTGAAGTTTATAGATCTAAGCCCTCTGTGTATCCAACGTGGTCGACAGTGCTGGGTCATCTATATTGATCTGCTTATTTTAGAGGGTGCTGGAAACTTACTTGATGCTTCCTCCTTGGTAGTCAAAGCTGCTCTACTAAACGCTACACAGTCAAATTCTTTATTATTGTCTGTTTTTCAAAACAA] [-] EMBL CD149915 [AAAAATGGCGGGGTTGATATTGAATCCCTATGGATCCAGTCCTATTAAGTGTTTTGAACGGTTTTATTTAGACCAAGGAGTTGAATTGGGATGTAAAATGGATGTTCGTGGGCCAAGTAAATATCGACCTTTAGAAATCGAAACTAATATTTTGAGTCATGCAACTGGTTCAGTTAGTATTCG ATTGGT AAACTTTCATGGTTGGCTGTGTTAAAAT GAGGGTGGCCAACCTTCTTTAATTAACATTAGTGAAGGTCGTATTGAAATAAATGTTAAGTGTTA CCTCCGGGCAATTCACGGTTGTAACGAAAAGCCAGC TCCGAACTGGAGGAACGTTTGAAGACAACATTGCAATCAGCCTATCAATTGAAGTTTATAGATCTAAGCCCTCTGTGTATCCAACGTGGTCGACAGTGCTGGGTCATCTATATTGATCTGCTTATTTTAGAGGGTGCTGGAAACTTACTTGATGCTTCCTCCTTGGTAGTCAAAGCTGCTCTACTAAACGCTACACAGTCAAATTCTTTATTATTGTCTGTTTTTCAAAACAA] [-] EMBL CD149991 [ GTCATGCAACTGGTTCAGCTAGTATTCGTATTGGTGAAACTTTCATCGTTTGCTGTGTTAAAATGGAGGTTGGCAAACCTTCTTTAACTAACACTAGTGAAGGTCGTATTGAAATAGATGTTGAGTGTTACCCTAC GGCAACTCACCGCTGTAACGAAAAGGCAGCATCCGAACTGGAGGAACGTTTGAAGACAACATTGCAATCAGCCTATCAATTGAAGTTTATAGATCTAAGCCCTCTGTGTATCCAACGTGGTCGACAGTGCTGGGTCATCTATATTGATCTGCTTATTTTAGAGGGTGCTGGAAACTTACTTGATGCTTCCTCCTTGGTAGTCAAAGCTGCTCTACTAAACGCTACACAGTCAAATTCTTTATTATTGTCTGTTTTTCAAAACAA] [-] EMBL CD150016 [ TTCAGCTAGTATTCGTATTGGTGAAACTTTCATCGTTTGCTGTGTTAAAATGGAGGTTGGCAAACCTTCTTTAACTAACACTAGTGAAGGTCGTATTGAAATAGATGTTGAGTGTTACCCTAC GGCAACTCACCGCTGTAACGAAAAGGCAGCATCCGAACTGGAGGAACGTTTGAAGACAACATTGCAATCAGCCTATCAATTGAAGTTTATAGATCTAAGCCCTCTGTGTATCCAACGTGGTCGACAGTGCTGGGTCATCTATATTGATCTGCTTATTTTAGAGGGTGCTGGAAACTTACTTGATGCTTCCTCCTTGGTAGTCAAAGCTGCTCTACTAAACGCTACACAGTCAAATTCTTTATTATTGTCTGTTTTTCAAAACAA] [-] EMBL CD149984 [ TGGTGAAACTTTCATCGTTTGCTGTGTTAAAATGGAGGTTGGCAAACCTTCTTTAACTAACACTAGTGAAGGTCGTATTGAAATAGATGTTGAGTGTTACCCTAC GGCAACTCACCGCTGTAACGAAAAGGCAGCATCCGAACTGGAGGAACGTTTGAAGACAACATTGCAATCAGCCTATCAATTGAAGTTTATAGATCTAAGCCCTCTGTGTATCCAACGTGGTCGACAGTGCTGGGTCATCTATATTGATCTGCTTATTTTAGAGGGTGCTGGAAACTTACTTGATGCTTCCTCCTTGGTAGTCAAAGCTGCTCTACTAAACGCTACACAGTCAAATTCTTTATTATTGTCTGTTTTTCAAAACAA] [-] EMBL CD149982 [ GTGAAGGTCGTATTGAAATAGATGTTGAGTGTTACCNTAC GGCAACTCACCGCTGTAACGAAAAGGCAGCATCCGAACTGGAGGAACGTTTGAAGACAACATTGCAATCAGCCTATCAATTGAAGTTTATAGATCTAAGCCCTCTGTGTATCCAACGTGGTCGACAGTGCTGGGTCATCTATATTGATCTGCTTATTTTAGAGGGTGCTGGAAACTTACTTGATGCTTCCTCCTTGGTAGTCAAAGCTGCTCTACTAAACGCTACACAGTCAAATTCTTTATTATTGTCTGTTTTTCAAAACAA] consensusID : consensus_9203#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 290 fasta sequence [GTGCTTTCAAACTTAAGCGTTACTGCCCATTTACCCTACGGCAACTCACCGCTGTAACGAAAAGGCAGCATCCGAACTGGAGGAACGTTTGAAGACAACATTGCAATCAGCCTATCAATTGAAGTTTATAGATCTAAGCCCTCTGTGTATCCAACGTGGTCGACAGTGCTGGGTCATCTATATTGATCTGCTTGTCAGTTTTTATCATACTTAGTTATTTTTCCCAGATTTTAGAGGGTGCTGGAAACTTACTTGATGCTTCCTCCTTGGTAGTCAAAGCTGCTCTACTA] [-] EMBL CD192630 [GTGCTTTCAAACTTAAGCGTTACTGCCCATTTACCCTACGGCAACTCACCGCTGTAACGAAAAGGCAGCATCCGAACTGGAGGAACGTTTGAAGACAACATTGCAATCAGCCTATCAATTGAAGTTTATAGATCTAAGCCCTCTGTGTATCCAACGTGGTCGACAGTGCTGGGTCATCTATATTGATCTGCTTGTCAGTTTTTATCATACTTAGTTATTTTTCCCAGATTTTAGAGGGTGCTGGAAACTTACTTGATGCTTCCTCCTTGGTAGTCAAAGCTGCTCTACTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9203#0 TCCAGGCCAANAATTCGGCACGAGGAGCGTTACTGCCCATGTTGCCGAAATAAATTGCCT 60 consensus_9203#2 ------------------------------------------------------------ consensus_9203#1 ------------------------------------------------------------ consensus_9203#0 GGTTTGATATCGAATCACTATGGATACAGTCCTATTGAGTGATCTTGAACGGTTCTACTT 120 consensus_9203#2 ------------------------------------------------------------ consensus_9203#1 ------------------------------------------------------------ consensus_9203#0 AGTACAAGGAGTTGAAGTGGGATGTAGAATGGATGGTCGTGGGCCAAGTGAATATCGACC 180 consensus_9203#2 ------------------------------------------------------------ consensus_9203#1 ------------------------------------------------------------ consensus_9203#0 TTTAGAAATCGAAACTAATATTTTGAGTCATGCAACTGGTTCAGCTAGGTGAAACTTTCA 240 consensus_9203#2 ------------------------------------------------------------ consensus_9203#1 ----------------AAAAATGGCGGGGTTGATATTGAATCCCTATGGATCCAGTCCTA 44 consensus_9203#0 TCGTTTGCTGTGTTAAAATGGAGGTTGGCAAACCTTCTTTAACTAACACTAGTGAAGGTC 300 consensus_9203#2 ------------------------------------------------------------ consensus_9203#1 TTAAGTGTTTTGAACGGTTTTATTTAGACCAAGGAGTTGAATTGGGATGTAAAATGGATG 104 consensus_9203#0 GTATTGAAATAAATGTTGAGTGGTGAGTGAAAGGTATTCATCTTCAAATAATATATAACT 360 consensus_9203#2 ------------------------------------------------------------ consensus_9203#1 TTCGTGGGCCAAGTAAATATCGACCTTTAGAAATCGAAACTAATATTTTGAGTCATGCAA 164 consensus_9203#0 TTGTAACGTATATTTAATGTTTTGTGTCAACATATGCTTTCAATATCCCATATATCTCAT 420 consensus_9203#2 ------------------------------------------------------------ consensus_9203#1 CTGGTTCAGCTAGTATTCGTATTGGTGAAACTTTCATCGTTTGCTGTGTTAAAATGGAGG 224 consensus_9203#0 CTGTATCATTACGTACATTTTTTTACAAAACTG-ACGATTTGTACAAAATCTTTCTCAGT 479 consensus_9203#2 ---------------------------GTGCTT-TCAAACT-TAAGCGTTACTGCCCATT 31 consensus_9203#1 TTGGCAAACCTTCTTTAACTAACACTAGTGAAGGTCGTATTGAAATAGATGTTGAGTG-T 283 * * * * * * consensus_9203#0 TACCCTACGGCAACTCACCGCTGTAACGAAAAGGCAGCATCCGAACTGGAGGAACGTTTG 539 consensus_9203#2 TACCCTACGGCAACTCACCGCTGTAACGAAAAGGCAGCATCCGAACTGGAGGAACGTTTG 91 consensus_9203#1 TACCCTACGGCAACTCACCGCTGTAACGAAAAGGCAGCATCCGAACTGGAGGAACGTTTG 343 ************************************************************ consensus_9203#0 AAGACAACATTGCAATCAGCCTATCAATTGAAGTTTATAGATCTAAGCCCTCTGTGTATC 599 consensus_9203#2 AAGACAACATTGCAATCAGCCTATCAATTGAAGTTTATAGATCTAAGCCCTCTGTGTATC 151 consensus_9203#1 AAGACAACATTGCAATCAGCCTATCAATTGAAGTTTATAGATCTAAGCCCTCTGTGTATC 403 ************************************************************ consensus_9203#0 CAACGTGGTCGACAGTGCTGGGTCATCTATATTGATCTGCTTGTCA--------GTTTTT 651 consensus_9203#2 CAACGTGGTCGACAGTGCTGGGTCATCTATATTGATCTGCTTGTCA--------GTTTTT 203 consensus_9203#1 CAACGTGGTCGACAGTGCTGGGTCATCTATATTGATCTGCTTATTTTAGAGGGTGCTGGA 463 ****************************************** * * * consensus_9203#0 ATCATACTTAGTTATTTTTCCCAGATTTTAGAGGGTGCTG----GNAACTTACTTGAT-G 706 consensus_9203#2 ATCATACTTAGTTATTTTTCCCAGATTTTAGAGGGTGCTG----GAAACTTACTTGAT-G 258 consensus_9203#1 AACTTACTTGATGCTTCCTCCTTGGTAGTCAAAGCTGCTCTACTAAACGCTACACAGTCA 523 * * ***** * ** *** * * * * * **** * *** * consensus_9203#0 CTTCCTNCTTGGTAGT---------------- 722 consensus_9203#2 CTTCCTCCTTGGTAGTCAAAGCTGCTCTACTA 290 consensus_9203#1 AATTCTTTATTATTGTCTGTTTTTCAAAACAA 555 * ** * * ** |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||