These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9205#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 950 fasta sequence [TCAATCTGACGGCCTGCACATTACTCGAATGAGCATTCAGAACCTGGTTTAGTAACGTGTTACAACAGTGTACATGTTCCGATGGTTCAGAGGGTTAGTATAACTATGCATGTCATAGGGATGACGCAAAGCTTGGTTGAATAAGTTGTTTAGTGAACGAGAACTAGTCGCTGTCATGCGATCAGAACACCAGACGTTCTGCTGAAGCGAATTGTGACTAATGCTTATCCCTGCGTGTTGATCTGCTGTATGGGATTACTTGGAATGGATTCGTTTGAGTTTCTTGACGCCGGGTTTTCGTCAGTCTGTTTGTTTGCATGCCGAGTTGGTGGTCATAGATATTGCACCAGGGTTAAAACAACTGAGGCTCACAGGTTAAAGAAGCGTGGTTCGAAATGGTCTGACTTCAAATCAACAGGTTTACAGATGACCAACCTTCAGATGGTAAGTGGGTATTGTTTGTTTTCCAACTGTATGCATATCAGTAGGTATCTCCCCGTAAGCAGTCCTCAACTTTCTTAACCGTACGTTGGCCATGTCATTGTTGCAACTATTGCAGCATGGAATACTTATCTCATGACAACCGATTGGTTCGGGCTTCGCTCTTATGAGTTACGGTTTTGTCAAAACGTGATTTTGTCCGCAACTGCAGTTGGAGTCCCAACAGTTCTCTGGATTGTCGAGAAGTATAGCATCTTGTGTGTCATTGTTATAAACTGCTGTCCAGCGGGAACACAGCTAGTGATAGGATTAATTCTAACAGTACGGCAAACACGCATGCTTTTTCGTGATTGTAATGCTGTGCAGATTGTATCGAGATTCAGTTCAAACCTAAAAGCCTTCATTTCATTGGGTCGTCAGATAAGTGTCACGCCTGTCGGCGCTATGACTAGTGAAGCCTTGATTTCAAACCACCGGTATGTACGAACTCCAGTATCCTGAGGACACTT] [-] EMBL CD182823 [TCAATCTGACGGCCTGCACATTACTCGAATGAGCATTCAGAACCTGGTTTAGTAACGTGTTACAACAGTGTACATGTTCCGATGGTTCAGAGGGTTAGTATAACTATGCATGTCATAGGGATGACGCAAAGCTTGGTTGAATAAGTTGTTTAGTGAACGAGAACTAGTCGCTGTCATGCGATCAGAACACCAGACGTTCTGCTGAAGCGAATTGTGACTAATGCTTATCCCTGCGTGTTGATCTGCTGTATGGGATTACTTGGAATGGATTCGTTTGAGTTTCTTGACGCCGGGTTTTCGTCAGTC ] [-] EMBL CD070261 [ AAGCGAATTGTGACTAATGCTTATCACTGCGTGTTGATCTGCTGTATGGGATTACTTGGAATGGATTCGTTTGAGTTTCTTGACGCCGGGTTTTCGTCAGTCTGTTTGTTTGCATGCCGAGTTGGTGGTCATAGATATTGCACCAGGGTTAAAACAACTGAGGCTCACAGGTTAAAGAAGCGTGGTTCGAAATGGTCTGACTTCAAATCAACAGGTTTACAGATGACCAACCTTCAGATGGTAAGTGGGTATTGTTTGTTTTCCAACTGTATGCATATCAGTAGGTATCTCCCCGTAAGCAGCCCTCAACTTTCTTAACCGTACGTTGGCCATGTCATTGTTGCA ] [-] EMBL CD191896 [ CGTTTGAGTTTCTTGACGCCGGGTTTTCGTCAGTCTGTTTGTTTGCATGCCGAGTTGGTGGTCATAGATATTGCACCAGGGTTAAAACAACTGAGGCTCACAGGTTAAAGAAGCGTGGTTCGAAATGGTCTGACTTCAAATCAACAGGTTTACAGATGACCAACCTTCAGATGGTAAGTGGGTATTGTTTGTTTTCCAACTGTATGCATATCAGTAGGTATCTCCCCGTAAGCAGTCCTCAACTTTCTTAACCGTACGTTGGCCATGTCATTGTTGCAACTATTGCAGCATGGAATACTTATCTCATGACAACCGATTGGTTCGGGCTTCGCTCTTATGAGTTACGG ] [+] EMBL CD153092 [ CAAATCAACAGGTTTACAGATGACCAACCTTCAGATGGTAAGTGGGTATTGTTTGTTTTCCAACTGTATGCATATCAGTAGGTATCTCCCCGTAAGCAGTCCTCAACTTTCTTAACCGTACGTTGGCCATGTCATTGTTGCAACTATTGCAGCATGGAATACTTATCTCATGACAACCGATTGGTTCGGGCTTCGCTCTTATGAGTTACGGTTTTGTCAAAACGTGATTTTGTCCGCAACTGCAGTTGGAGTCCCAACAGTTCTCTGGATTGTCGAGAAGTATAGCATCTTGTGTGTCATTGTTATAAACTGCTGTCCAGCGGGAACACAGCTAGTGATAGGATTAATTCTAACAGTACGGCAAACACGCATGCTTTTTCGTGATTGTAATGCTGTGCAGATTGTATCGAGATTCAGTTCAAACCTAAAAGCCTTCATTTCATTGGGTCGTCAGATAAGTGTCACGCCTGTCGGCGCTATGACTAGTGAAGCCTTGATTTCAAACCACCGGTATGTACGAACTCCAGTATCCTGAGGACACTT] consensusID : consensus_9205#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 628 fasta sequence [CGGGAATTCGATTGAAATAACGTGTTACTAGTGAAGCCTTGATTTCAAACCACCGGTATGTACGAACTCCAGTATCCTGAGGACACTTAATGTGTGAACAACCCGTTGGTGACCTGCAGCCGTGGGACCGCATCTATTGACTTAGCTACAGTCTTACTGATCAGATTTTCAGGTAGATGGCTCCGGTGGTGAACCTCTAAGATGACCTACTTTCGTTAGGACCCCAGGCTAGTATCATGATTCCTATACAAATAAAATATGGTTTTTTTGGCGCAAATGTATTCGGCACTTCTTATATCAATATTTATGTATTCAAATGAAAGTCACATCGGAGTATGTTGTTTAGTTCGTATTTGATGAGGGATTTTGAGCTGGGTAGTAGTTGTTTTGGACCCGATGAATGTAAGATCTACAATGTGTTTTGTGGTTGATCTGTCACTAAAGTTAACAGAGAAGACTCTAACCAAACCCAAAGGCTATGTTGAATTTTTTTCAATCTAACAGTACGGCAAACACGCATGCTTTTTCGTGATTGTAATGCTGTGCAGATTGTATCGAGATTCAGTTCAAACCTAAAAGCCTTCATTTCATTGGGTCGTCAGATAAGTGTCACGCCTGTCGGCGCTAT] [+] EMBL CD134223 [CGGGAATTCGATTGAAATAACGTGTTACTAGTGAAGCCTTGATTTCAAACCACCGGTATGTACGAACTCCAGTATCCTGAGGACACTTAATGTGTGAACAACCCGTTGGTGACCTGCAGCCGTGGGACCGCATCTATTGACTTAGCTACAGTCTTACTGATCAGATTTTCAGGTAGATGGCTCCGGTGGTGAACCTCTAAGATGACCTACTTTCGTTA ] [-] EMBL CD121940 [ CTATTGACTTAGCTACAGTCTTACTGATCAGATTTTCAGGTAGATGGCTCCGGTGGTGAACCTCTAAGATGACCTACTTTCGTTAGGACCCCAGGCTAGTATCATGATTCCTATACAAATAAAATATGGTTTTTTTGGCGCAAATGTATTCGGCACTTCTTATATCAATATTTATGTATTCAAATGAAAGTCACATCGGAGTATGTTGTTTAGTTCGTATTTGATGAGGGATTTTGAGCTGGGTAGTAGTTGTTTTGGACCCGATGAATGTAAGATCTACAATGTGTTTTGTGGTTGATCTGTCACTAAAGTTAACAGAGAAGACTCTAACCAAACCCAAAGGCTATGTTGAATTTTTTTCAATCTAACAGTACGGCAAACACGCATGCTTTTTCGTGATTGTAATGCTGTGCAGATTGTATC ] [-] EMBL CD121950 [ TTTCAGGTAGATGGCTCCGGTGGTGAACCTCTAAGATGACCTACTTTCGTTAGGACCCCAGGCTAGTATCATGATTCCTATACAAATAAAATATGGTTTTTTTGGCGCAAATGTATTCGGCACTTCTTATATCAATATTTATGTATTCAAATGAAAGTCACATCGGAGTATGTTGTTTAGTTCGTATTTGATGAGGGATTTTGAGCTGGGTAGTAGTTGTTTTGGACCCGATGAATGTAAGATCTACAATGTGTTTTGTGGTTGATCTGTCACTAAAGTTAACAGAGAAGACTCTAACCAAACCCAAAGGCTATGTTGAATTTTTTTCAATCTAACAGTACGGCAAACACGCATGCTTTTTCGTGATTGTAATGCTGTGCAGATTGTATCGAGATTCAGTTCAAACCTAAAAGCCTTCATTTCATTGGGTCGTCAGATAAGTGTCACGCCTGTCGGCGCTAT] consensusID : consensus_9205#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 251 fasta sequence [GACGTTCTGCTGAAGCGAATTGTGACTAATGCTTATCACTGCGTGTTGATCTGCTGTATGGGATTACTTGGAATGGATTCGTTTGAGTTTCTTGACGCCGGGTTTTCGTCAGTCTGTTTGTTTGCATGCCGAGTTGGTGGTCATAGATATTGCACCAGGGTTAAAACAACTGAGGCTCACAGGTTAAAGAAGCGTGGTTCGAAATGGTCTGACTTCAAATCAGCAGGTTTACAGATGACCGGGTACCGGAG] [-] EMBL CD129253 [GACGTTCTGCTGAAGCGAATTGTGACTAATGCTTATCACTGCGTGTTGATCTGCTGTATGGGATTACTTGGAATGGATTCGTTTGAGTTTCTTGACGCCGGGTTTTCGTCAGTCTGTTTGTTTGCATGCCGAGTTGGTGGTCATAGATATTGCACCAGGGTTAAAACAACTGAGGCTCACAGGTTAAAGAAGCGTGGTTCGAAATGGTCTGACTTCAAATCAGCAGGTTTACAGATGACCGGGTACCGGAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9205#0 TCAATCTGACGGCCTGCACATTACTCGAATGAGCATTCAGAACCTGGTTTAGTAACGTGT 60 consensus_9205#2 ------------------------------------------------------------ consensus_9205#1 ------------------------------------------------------------ consensus_9205#0 TACAACAGTGTACATGTTCCGATGGTTCAGAGGGTTAGTATAACTATGCATGTCATAGGG 120 consensus_9205#2 ------------------------------------------------------------ consensus_9205#1 ------------------------------------------------------------ consensus_9205#0 ATGACGCAAAGCTTGGTTGAATAAGTTGTTTAGTGAACGAGAACTAGTCGCTGTCATGCG 180 consensus_9205#2 ------------------------------------------------------------ consensus_9205#1 ------------------------------------------------------------ consensus_9205#0 ATCAGAACACCAGACGTTCTGCTGAAGCGAATTGTGACTAATGCTTATCCCTGCGTGTTG 240 consensus_9205#2 ------------GACGTTCTGCTGAAGCGAATTGTGACTAATGCTTATCACTGCGTGTTG 48 consensus_9205#1 -----------------------------------------CGGGAATTCGATTGAAATA 19 * ** * * consensus_9205#0 ATCTGCTGTATGGGATTACTTGGAATGGATTCGTTTGAGTTTCTTGACGCCGGGTTTTCG 300 consensus_9205#2 ATCTGCTGTATGGGATTACTTGGAATGGATTCGTTTGAGTTTCTTGACGCCGGGTTTTCG 108 consensus_9205#1 ACGTGTTACTAGTGAAGCCTTGATTTCAAACCACCGGTATGTACGAACTCCAGTATCCTG 79 * ** * * ** **** * * * * * * ** ** * * * consensus_9205#0 TCAGT-CTGTTTGTTTGCATGCCGAGTTGGTGGTC-ATAGATATTGCACCAGGGTTAAAA 358 consensus_9205#2 TCAGT-CTGTTTGTTTGCATGCCGAGTTGGTGGTC-ATAGATATTGCACCAGGGTTAAAA 166 consensus_9205#1 AGGACACTTAATGTGTGAACAACCCGTTGGTGACCTGCAGCCGTGGGACCGCATCTAT-- 137 ** *** ** * * ******* * ** * * *** ** consensus_9205#0 CAACTGAGGCTCACAGGTTAAAGAAGCGTGGTTCGAAATGGTCTGACTTCAAATCAACAG 418 consensus_9205#2 CAACTGAGGCTCACAGGTTAAAGAAGCGTGGTTCGAAATGGTCTGACTTCAAATCAGCAG 226 consensus_9205#1 TGACTTAG--CTACAGTCTTACTGATCAGATTTTCAGGTAGA-TGGCTCCGGTGGTGAAC 194 *** ** **** * * * * ** * * * ** ** * * consensus_9205#0 GTTTACAGATGACCAACCTTCAGATGGTAAGTGGGTATTGTTTGTTTTCCAACTGTATGC 478 consensus_9205#2 GTTTACAGATGACCGGGTACCGGAG----------------------------------- 251 consensus_9205#1 CTCTA-AGATGACCTACTTTCGTTAGGACCCCAGGCTAGTATCATGATTC--CTATACAA 251 * ** ******** * consensus_9205#0 ATATCAGTAGGTATCTCCCCGTAAGCAGTCCTCAACTTTCTTAACCGTACGTTGGCCATG 538 consensus_9205#2 ------------------------------------------------------------ consensus_9205#1 ATAAAATATGGTTTTTTTGGCGCAAATGTATTCGGCACTTCT--------------TATA 297 consensus_9205#0 TCATTGTTGCAACTATTGCAGCATGGAATACTTATCTCATGACAACCGATTGGTTCGGGC 598 consensus_9205#2 ------------------------------------------------------------ consensus_9205#1 TCAATATT-TATGTATTCAA--ATGAAAGTCACATCGGAGTATG-TTGTTTAGTTCGTAT 353 consensus_9205#0 TTCGCTCTTATGAGTTACGGTTTTGTCAAAACGTGATTTTGTCCGCAACTGCAGTTGGAG 658 consensus_9205#2 ------------------------------------------------------------ consensus_9205#1 TTGA---TGAGGGATTTTGAGCTGGGTAGTA-GTTGTTTTGGACCCGATGAATGTAAGAT 409 consensus_9205#0 TCCCAACA-GTTCTCTGGATTGTCGAGAAGTATAGCATCTTGTGTGTCATTGTTATAAAC 717 consensus_9205#2 ------------------------------------------------------------ consensus_9205#1 CTACAATGTGTTTTGTGGTTGATCTGTCACTAAAG-----------TTAACAGAGAAGAC 458 consensus_9205#0 TGCTGTCCAGCGGGAACACAGCTAGTGATAGGATTAATTCTAACAGTACGGCAAACACGC 777 consensus_9205#2 ------------------------------------------------------------ consensus_9205#1 TCTAACCAAACCCAAAGGCTATGTTGAATTTTTTTCAATCTAACAGTACGGCAAACACGC 518 consensus_9205#0 ATGCTTTTTCGTGATTGTAATGCTGTGCAGATTGTATCGAGATTCAGTTCAAACCTAAAA 837 consensus_9205#2 ------------------------------------------------------------ consensus_9205#1 ATGCTTTTTCGTGATTGTAATGCTGTGCAGATTGTATCGAGATTCAGTTCAAACCTAAAA 578 consensus_9205#0 GCCTTCATTTCATTGGGTCGTCAGATAAGTGTCACGCCTGTCGGCGCTATGACTAGTGAA 897 consensus_9205#2 ------------------------------------------------------------ consensus_9205#1 GCCTTCATTTCATTGGGTCGTCAGATAAGTGTCACGCCTGTCGGCGCTAT---------- 628 consensus_9205#0 GCCTTGATTTCAAACCACCGGTATGTACGAACTCCAGTATCCTGAGGACACTT 950 consensus_9205#2 ----------------------------------------------------- consensus_9205#1 ----------------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||