These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9211#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 879 fasta sequence [AGGGTCCTTTACAGTACGAAGTATACTTTCTAACTTGGGATAATCGTGACGTCATTTCCTTCGCGATATCTGTCTAATGGTGTCCGGATCATTAAGCAACTTTTCTTCCGCAGTCAACAAAACTGCAGGATCTGCAAATGCATTATGTGAACTTGTAGAAAAGTCTCAAGAATTTCTGATTCGTAATGTCCACTCACTAGACTTTATTTTGGATGACTTTGATATTGCTAAATTCGGAATTTTACATGCAGCTGTGATACATGCCAAATATATTTCACAGTCAGTTGTTGATAAAGAGTGGCTAGTAATCCAAACTCA-AAACCTTTTCAATCTTTGTAACTCAGAGTCTTTGCAAAAAATTCCATCTTATGTTCGTGTAATTTCACATGAATTTACGAACTGCCTGATTAATATGGGGATTCCACACAAGGGAATCAGTTGTATGGTCACTGCTATTCACAAACTTCAGAAATGTCCGGGGTATCTTACTCCACTACACTGTGATCTATGCCAGCTTGGATTAGCTGCTAGAATGTTTAGTCCCACTCTTTCAATTCTCGATATTAATATTTTAGAAATTGATAAAAGCAGTACAGCCCTTGAAGCTAAAGATTATCTCCTATACTTTTACTATGGAGGAATGATTTATGGCGCAGTAAAGAATTGGGAAAGAAGCCTACACTTTTTTGAATTGTGTTTAATTATCCCTGCCGTATCATCAAGCTGTATTCTGATTGAAGCTGCAAAAAAGATAATATTAATCTCCTTGATATTACATGGGAAATTCAGTACGGTCCTTGAAACTCCGGCTGCATATTTCATGTCTCCAAGGCCTTGGAAATGCTACTGTCAGCCATATTTAGAACTAGCAACAGCATT] [+] EMBL AI975624 [AGGGTCCTTTACAGTACGAAGTATACTTTCTAACTTGGGATAATCGTGACGTCATTTCCTTCGCGATATCTGTCTAATGGTGTCCGGATCATTAAGCAACTTTTCTTCCGCAGTCAACAAAACTGCAGGATCTGCAAATGCATTATGTGAACTTGTAGAAAAGTCTCAAGAATTTCTGATTCGTAATGTCCACTCACTAGACTTTATTTTGGATGACTTTGATATTGCTAAATTCGGAATTTTACATGCAGCTGTGATACATGCCAAATATATTTCACAGTCAGTTGTTGATAAAGAGTGGCTAGTAATCCAAACTCA AAACCTTTTCAATCTTTGTAACTCAGAGTCTTTGCAAAAAATTCCATCTTATGTTCGTGTAATTTCACATGAATTTACGAACTGCCTGATTAATATGGGGATTCCACACAAGGGAATCAGTTGTATGGTCACTGCTATTCACAAACTTCAGAAATGTCCGGGGTATCTTACTCCACTACACTGTGATCTATGCCAGCTTGGATTAGCTGCTTGAATG TTAATCC ] [+] EMBL CD161171 [ AGTATACTTTCTAACTTGGGATAATCGTGACGTCATTTCCTTCGCGATATCTGTCTAATGGTGTCCGGATCATTAAGCAACTTTTCTTCCGCAGTCAACAAAACTGCAGGATCTGCAAATGCATTATGTGAACTTGTAGAAAAGTCTCAAGAATTTCTGATTCGTAATGTCCACTCACTAGACTTTATTTTGGATGACTTTGATATTGCTAAATTCGGAATTTTACATGCAGCTGTGATACATGCCAAATATATTTCACAGTCAGTTGTTGATAAAGAGTGGCTAGTAATCCAAACTCA AAACCTCTTCAATCTTTGTAACTCAGAGTCTTTGCAAAAAATTCCATCTTATGTTCGTGTAATTTCACATGAATTTACGAACTGCCTGATTAATATGGGGATTCCACACAAGGGAATCAGTTGTATGGTCACTGCTATTCACAAACTTCAGAAATGTCCGGGGTATCTTACTCCACTACACTGTGATCTATGCCAGCTTGGATTAGCTGCTAGAATGTTTAGTCCCACTCTTTCAATTCTCGATATTAATATTTTAGAAATTGATAAAAGCAGTACAGCCCTTGAAGCTAAAGATTATCTCCTATACTTTTACTATGGA ] [-] EMBL CD178400 [ CCTTCGCGATATCTGTCTAATGGTGTCCGGATCATTAAGCAACTTTTCTTCCGCAGTCAACAAAACTGCAGGATCTGCAAATGCATTATGTGAACTTGTAGAAAAGTCTCAAGAATTTCTGGTTCGTAATGTCCACTCACTAGACTTTATTTTGGATGACTTTGATATTGCTAAATTCGGAATTTTACATGCAGCTGTAATACATGCCAAATATATTTCACAGTCAGTTGTTGATAAAGAGTGGCTAGTAATCCAAACTCA AAACCTTTTCAATCTTTGTGACTCAGAGTCTTTGCAAAAAATTCCATCTTATGTTCGTGTAATTTCACATGAATTTACGAACTGCCTGATTAATATGGGGATTCCACACAAGGGAATCAGTTGTATGGTCACTGCTATTCACAAACTTCAGAAATGTCCGGGGTATCTTACTCCACTACACTGTGATCTATGCCAGCTTGGATTAGCTGCTAGAATGTTT ] [-] EMBL CD133258 [ CTCAAGAATTTCTGATTCGTAATGTCCACTCACTAGACTTTATTTTGGATGACTTTGATATTGCTAAATTCGGAATTTTACATGCAGCTGTAATACATGCCAAATATATTTCACAGTCAGTTGTTGATAAAGAGTGGCTAGTAATCCAAACTCA AAACCTTTTCAATCTTTGTAACTCAGAGTCTTTGCAAAAAATTCCATTTTATGTTCGTGTAATTTCACATGAATTTACGAACTGCCTGATTAATATGGGGATTCCACACAAGGGAATCAGTCGTATGGTCACTGCTATTCACAAACTTTACAAATGTCCCGGGTGTCTTACTCCAC ] [-] EMBL CD161042 [ AAACTCANAACCCTTTTCAATCTTTGTAACTCAGAGTCTNTGCAAAAAATTCCATCTTATGTTCGTGTAATTTCACATGAATNTACGAACTGCCTGATTAATATGGGGATTCCACACAAGGGAATCAGTTGTATGGTCACTGCCATTCACAAACTTCAGAAATGTCCGGGGTATCTTACTCCACTACACTGTGATCTATGCCAGCTTGGATTAGCTGCTAGAATGTTTAGTCCCACTCTTTCAATTCTCGATATTAATATTTTAGAAATTGATAAAAGCAGTACAGCCCTTGAAGCTAAAGATTATCTCCTATACTTTTACTATGGAGGAATGATTTATGGCGCAGTAAAGAATTGGGAAAGAAGCCTACACTTTTTTGAATTGTGTTTAATTATCCCTGCCGTATCATCAAGCTGTATTCTGATTGAAGCTGCAAAAAAGATAATATTAATCTCCTTGATATTACATGGGAAATTCAGTACGGTCCTTGAAACTCCGGCTGCATATTTCATGTCTCCAAGGCCTTGGAAATGCTACTGTCAGCCATATTTAGAACTAGCAACAGCATT] [+] EMBL CD193699 [ AACTCA AAACCTTTTCAATCTTTGTAACTCAGAGTCTTTGCAAAAAATTCCATCTTATGTTCGTGTAATTTCACATGAATTTACGAACTGCCTGATTAATATGGGGATTCCACACAAGGGAATCAGTTGTATGGTCACTGCTATTCACAAACTTCAGAAATGTCCGGGGTATCTTACTCCACTACACTGTGATCTAT ] [+] EMBL CD130541 [ CCAGCTTGGATTAGCTGCTAGAATGTTTAGTCCCACTCTTTCAATTCTCGATATTAATATTTTAGAAATTGATAAAAGCAGTACAGCCCTTGAAGCTAAAGATTATCTCCTATACTTTTACTATGGAGGAATGATTTATGGCGCAGTAAAGAATTGGGAAAGAAGCCTACACTTTTTTGAATTGTGTTTAATTATCCCTGCCGTATCATCAAGCTGTATTCTGATTGAAGCTGCAAAAAAGATAATATTAATCTCCTTGATATTACATGGGAAATTCAGTACGGTCCTTGAAACTCCGGCTGCATATTTCATGTCTCCAAGGCCTTGNAA ] consensusID : consensus_9211#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 534 fasta sequence [TACTCCACTACACTGTGATCTATGCCAGGTAAATGCTAATGTATGTACATGGTGTGCAGCTTGGATTAGCTGCTAGAATGTTTAGTCCCACTCTTTCAATTCTCGATATTAATATTTTAGAAATTGATAAAAGCAGTACAGCCCTTGAAGCTAAAGATTATCTCCTATGCTTTTACTATGGAGGAATGATTTATGGCGCAGTAAAGAATTGGGAAAGAAGCCTACACTTTTTTGAATTGTGTTTAATTATCCCTGCCGTATCATCAAGCTGTATTCTGATTGAAGCTGCAAAAAAGATAATATTAATCTCCTTGATATTACATGGGAAATTCAGTACGGTCCTTGAAACTCCGGCTGCATATTTCATGTCTCCAAGGCCTTGGAAATGCTACTGTCAGCCATATTTAGAACTAGCAACAGCATTTCGATCTAACAATCCTGAGGACTTAACTAATTTTGTTGATCTTCATCGAGAATTATTTACAGCTGATTTCAACTTCGGACTTGTTAAACAAGTAATAAAGTGTCATGGAA] [+] EMBL CD183276 [TACTCCACTACACTGTGATCTATGCCAGGTAAATGCTAATGTATGTACATGGTGTGCAGCTTGGATTAGCTGCTAGAATGTTTAGTCCCACTCTTTCAATTCTCGATATTAATATTTTAGAAATTGATAAAAGCAGTACAGCCCTTGAAGCTAAAGATTATCTCCTATGCTTTTACTATGGAGGAATGATTTATGGCGCAGTAAAGAATTGGGAAAGAAGCCTACACTTTTTTGAATTGTGTTTAATTATCCCTGCCGTATCATCAAGCTGTATTCTGATTGAAGCTGCAAAAAAGATAATATTAATCTCCTTGATATTACATGGGAAATTCAGTACGGTCCTTGAAACTCCGGCTGCATATTTCATGTCTCCAAGGCCTTGGAAATGCTACTGTCAGCCATATTTAGAACTAGCAACAGCATTTCGATCTAACAATCCTGAGGACTTAACTAATTTTGTTGATCTTCATCGAGAATTATTTACAGCTGATTTCAACTTCGGACTTGTTAAACAAGTAATAAAGTGTCATGGAA] consensusID : consensus_9211#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 486 fasta sequence [TGACGTCATTTCCTTCGCGATATCTGTCTAATGGTGTCCGGATCATTAAGCAACTTTTCTTCCGCAGTCAACAAAACTGCAGGATCTGCAAATGCATTATGTGAACTTGTAGAAAAGTCTCAAGAATTTCTGATTCGTAATGTCCACTCACTAGACTTTATTTTGGATGACTTTGATATTGCTAAATTCGGAATTTTACATGCAGCTGTAATGTTAGTTGTCAACTATTTCACACTTACAGCAGACATGCCAAATATATTTCACAGTCAGTTGTTGATAAAGAGTGGCTAGTAATCCAAACTCAAAACCTTTTCAATCTTTGTAACTCAGAGTCTTTGCAAAAAATTCCATCTTATGTTCGTGTAATTTCACATGAATTTACGAACTGCCTGATTAATATGGGGATTCCACACAAGGGAATCAGTTGTATGGTCACTGCTATTCACAAACTTCAGAAATGTCCGGNGTATCTTACTCCACTACACT] [+] EMBL CD132747 [TGACGTCATTTCCTTCGCGATATCTGTCTAATGGTGTCCGGATCATTAAGCAACTTTTCTTCCGCAGTCAACAAAACTGCAGGATCTGCAAATGCATTATGTGAACTTGTAGAAAAGTCTCAAGAATTTCTGATTCGTAATGTCCACTCACTAGACTTTATTTTGGATGACTTTGATATTGCTAAATTCGGAATTTTACATGCAGCTGTAATGTTAGTTGTCAACTATTTCACACTTACAGCAGACATGCCAAATATATTTCACAGTCAGTTGTTGATAAAGAGTGGCTAGTAATCCAAACTCAAAACCTTTTCAATCTTTGTAACTCAGAGTCTTTGCAAAAAATTCCATCTTATGTTCGTGTAATTTCACATGAATTTACGAACTGCCTGATTAATATGGGGATTCCACACAAGGGAATCAGTTGTATGGTCACTGCTATTCACAAACTTCAGAAATGTCCGGNGTATCTTACTCCACTACACT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9211#0 AGGGTCCTTTACAGTACGAAGTATACTTTCTAACTTGGGATAATCGTGACGTCATTTCCT 60 consensus_9211#2 ----------------------------------------------TGACGTCATTTCCT 14 consensus_9211#1 -----------------------------------------------TACTCCACTACAC 13 ** ** * * consensus_9211#0 TCGCGATATCTGTCTAATGGTGTCCGGATCATTAAGCAACTTTTCTTCCGCAGTCAACAA 120 consensus_9211#2 TCGCGATATCTGTCTAATGGTGTCCGGATCATTAAGCAACTTTTCTTCCGCAGTCAACAA 74 consensus_9211#1 T-GTGATCTATGCCAGGTAA-ATGCTAAT--GTATGTACATGGTGTGCAGC--TTGGATT 67 * * *** * ** * * * * ** ** * * * * * * ** * consensus_9211#0 AACTGC-AGGATCTGCAAATGCATTATGTGAACTT---GTAGAAAAGTCTCAAGAATTTC 176 consensus_9211#2 AACTGC-AGGATCTGCAAATGCATTATGTGAACTT---GTAGAAAAGTCTCAAGAATTTC 130 consensus_9211#1 AGCTGCTAGAATGTTTAGTCCCACTCTTTCAATTCTCGATATTAATATTTTAGAAATTGA 127 * **** ** ** * * ** * * * ** * ** ** * * * **** consensus_9211#0 TGAT--TCGTAATGTCCACTCA-CTAGACTTTATTTTGGATGACTTTGATATTGCTAAAT 233 consensus_9211#2 TGAT--TCGTAATGTCCACTCA-CTAGACTTTATTTTGGATGACTTTGATATTGCTAAAT 187 consensus_9211#1 TAAAAGCAGTACAGCCCTTGAAGCTAAAGATTATCTCCTATGCTTTTACTATGGAGGAAT 187 * * *** * ** * *** * **** * *** *** *** * *** consensus_9211#0 ---TCGGAATTTTACATGCAGCTGTGAT-------------------------------- 258 consensus_9211#2 ---TCGGAATTTTACATGCAGCTGTAATGTTAGTTGTCAACTATTTCACACTTACAGCAG 244 consensus_9211#1 GATTTATGGCGCAGTAAAGAATTGGGAAAGAAGCCTACA-CTTTTTTGAATTGTGTTTAA 246 * * * ** * consensus_9211#0 ACATGCCAAATATATTTCACAGTCAGTTGTTGATAAAGAGTGGCTAGTAATCCAAACTCA 318 consensus_9211#2 ACATGCCAAATATATTTCACAGTCAGTTGTTGATAAAGAGTGGCTAGTAATCCAAACTCA 304 consensus_9211#1 TTATCCCTGCCGTATCATCAAGCTGTATTCTGATTGA-AGCTGCAAAAAAGATAATATTA 305 ** ** *** ** * **** * ** ** * ** ** * * consensus_9211#0 AAACCTTTTCAATC---TTTGTAACTCAG---AGTCTTTGCAAAA--AATTCCATCTTAT 370 consensus_9211#2 AAACCTTTTCAATC---TTTGTAACTCAG---AGTCTTTGCAAAA--AATTCCATCTTAT 356 consensus_9211#1 ATCTCCTTGATATTACATGGGAAATTCAGTACGGTCCTTGAAACTCCGGCTGCATATTTC 365 * * ** ** * * ** **** *** *** ** * *** ** consensus_9211#0 GTTCGTGTAATTTCACATGAAT-TTACGAACTGCCTGATTAATA--TGGGGATTCCACAC 427 consensus_9211#2 GTTCGTGTAATTTCACATGAAT-TTACGAACTGCCTGATTAATA--TGGGGATTCCACAC 413 consensus_9211#1 ATGTCTCCAAGGCCTTGGAAATGCTACTGTCAGCCATATTTAGAACTAGCAACAGCATTT 425 * * ** * *** *** * *** *** * * * * * ** consensus_9211#0 AAGGGAATCAGTTGTATGGTC---ACTGCTATTCACAAACTTCA----GAAATGTCCGGG 480 consensus_9211#2 AAGGGAATCAGTTGTATGGTC---ACTGCTATTCACAAACTTCA----GAAATGTCCGGN 466 consensus_9211#1 CGATCTAACAATCCTGAGGACTTAACTAATTTTGTTGATCTTCATCGAGAATTATTTACA 485 * ** * * ** * *** * ** * ***** *** * * consensus_9211#0 GTATCTTACTCCACTACACTGTGATCTATGCCAGCTTGGATTAGCTGCTAGAATGTTTAG 540 consensus_9211#2 GTATCTTACTCCACTACACT---------------------------------------- 486 consensus_9211#1 GCTGATTTCAACTTCGGACTTGTTAAACAAGTAATAAAGTGTCATGGAA----------- 534 * ** * * *** consensus_9211#0 TCCCACTCTTTCAATTCTCGATATTAATATTTTAGAAATTGATAAAAGCAGTACAGCCCT 600 consensus_9211#2 ------------------------------------------------------------ consensus_9211#1 ------------------------------------------------------------ consensus_9211#0 TGAAGCTAAAGATTATCTCCTATACTTTTACTATGGAGGAATGATTTATGGCGCAGTAAA 660 consensus_9211#2 ------------------------------------------------------------ consensus_9211#1 ------------------------------------------------------------ consensus_9211#0 GAATTGGGAAAGAAGCCTACACTTTTTTGAATTGTGTTTAATTATCCCTGCCGTATCATC 720 consensus_9211#2 ------------------------------------------------------------ consensus_9211#1 ------------------------------------------------------------ consensus_9211#0 AAGCTGTATTCTGATTGAAGCTGCAAAAAAGATAATATTAATCTCCTTGATATTACATGG 780 consensus_9211#2 ------------------------------------------------------------ consensus_9211#1 ------------------------------------------------------------ consensus_9211#0 GAAATTCAGTACGGTCCTTGAAACTCCGGCTGCATATTTCATGTCTCCAAGGCCTTGGAA 840 consensus_9211#2 ------------------------------------------------------------ consensus_9211#1 ------------------------------------------------------------ consensus_9211#0 ATGCTACTGTCAGCCATATTTAGAACTAGCAACAGCATT 879 consensus_9211#2 --------------------------------------- consensus_9211#1 --------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||