cluster # 9212

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Schistosoma mansoni
cluster # 9212 cluster # 9212 Sequences # 9 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9212#0 length = 746 sequences # 6

consensus_9212#1 length = 471 sequences # 3

consensusID : consensus_9212#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 746
fasta sequence

                              [CTGCTGCTCCCACATTCCCCAGTAGGCATACACACACATCTATCTCAATGTCAGTCGTGCTTTATGTTTAACTCAACGGATTATCACTTTCATTTTCATCGAACATCCAGCTTTCCAGAAATGTGGTCACAATCATCGTATTCCGTTCCATCTGTACATTGTTTGCTCAATCATTTTCTTTGCAACCATTTCCATTCGAGTGCTTCAACATGCACAGATTGTATACATCATTGAGCGTCTCATGGTGAACAAGCGAAACGCTCACGAATGTGTATGCACTTATTTGCAATTCTTCAGCGATTCAATAACTTGAAGTGATCACTGTGAACACACTCACACATTGAGGTACAAACAGTGTTCGTCGATCGACTCCTCATTATTCATAGTGAGTGATGTATCATAGAGCAGCACCACTCATTTCACTGTTCCACATCAGCATTTCGATGCATGTCATTTTACTACTCCGTCACCATAGGATATGAGTAAAGCTTGAATGCAACTTCTTACTGGAAGGAGCTTCAAATTAGCATATCAGTCATTGGAGTTCAATTTGAGTATTATCACTGAAGGGTTATATATATGTATATAGAAATGCTCGTCCATTTACATGTGAATGTTTATACATTCGTTATTTGTAGATAAACCAGCAATGAAGCCAAATGTTCACATGATGCGTAAGTGTACTTATTCTGATGATATTTACAATCCAAACAATTTTTGATTTGTCCTTATAACAAACAGATTTC]

[+] EMBL CD083392             [CTGCTGCTCCCACATTCCCCAGTAGGCATACACACACATCTATCTCAATGTCAGTCGTGCTTTATGTTTAACTCAACGGATTATCACTTTCATTTTCATCGAACATCCAGCTTTCCAGAAATGTGGTCACAATCATCGTATTCCGTTCCATCTGTACATTGTTTGCTCAATCATTTTCTTTGCAACCATTTCCATTCGAGTGCTTCAACATGCACAGATTGTATACATCATTGAGCGTCTCATGGTGAACAAGCGAAACGCTCACGAATGTGTATGCACTTATTTGCAATTCTTCAGCGATTCAATAACTTGAAGTGATCACTGTGAACACACTCACACATTGAGGTACAAACAGTGTTCGTCGATCGACTCCTCATTATTCATAGTGAGTGATGTATCATAGAGCAGCA                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL CD163525             [                  CCAGTAGGCATACACACACATCTATCTCAATGTCAGTCGTGCTTTATGTTTAACTCAACGGATTATCACTTTCATTTTCATCGAACATCCAGCTTTCCAGAAATGTGGTCACAATCATCGTATTCCGTTCCATCTGTACATTGTTTGCTCAATCATTTTCTTTGCAACCATTTCCATTCGAGTGCTTCAACATGCACAGATTGTATACATCATTGAGCGTCTCATGGTGAACAAGCGAAACGCTCACGAATGTGTATGCACTTATTTGCAATTCTTCAGCGATTCAATAACTTGAAGTGATCACTGTGAACACACTCACACATTGAGGTACAAACAGTGTTCGTCGATCGACTCCTCATTATTCATAGTGAGTG                                                                                                                                                                                                                                                                                                                                                                  ]
[-] EMBL CD163343             [                   CAGTAGGCATACACACACATCTATCTCAATGTCAGTCGTGCTTTATGTTTAACTCAACGGATTATCACTTTCATTTTCATCGAACATCCAGCTTTCCAGAAATGTGGTCACAATCATCGTATTCCGTTCCATCTGTACATTGTTTGCTCAATCATTTTCTTTGCAACCATTTCCATTCGAGTGCTTCAACATGCACAGATTGTATACATCATTGAGCGTCTCATGGTGAACAAGCGAAACGCTCACGAATGTGTATGCACTTATTTGCAATTCTTCAGCGATTCAATAACTTGAAGTGATCACTGTGAACACACTCACACATTGAGGTACAAACAGTGTTCGTCGATCGACTCCTCATTATTCATAGTGAGTGA                                                                                                                                                                                                                                                                                                                                                                 ]
[-] EMBL CD155809             [                                        TATCTCAATGTCAGTCGTGCTTTATGTTTAACTCAACGGATTATCACTTTCATTTTCATCGAACATCCAGCTTTCCAGAAATGTGGTCACAATCATCGTATTCCGTTCCATCTGTACATTGTTTGCTCAATCATTTTCTTTGCAACCATTTCCATTCGAGTGCCTCAACATGCACAGATTGTATACATCATTGAGCGTCTCATGGTGAACAAGCGAAACGCTCACGAATGTGTATGCACTTATTTGCAATTCTTCAGCGATTCAATAACTTGAAGTGATCACTGTGAACACACTCACACATTGAGGTACAAACAGTGTTC                                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL CD154444             [                                                                                                                            GGTCACAATCATCGTATTCCGTTCCATCTGTACATTGTTTGCTCAATCATTTTCTTTGCAACCATTTCCATTCGAGTGCTTCAACATGCACAGATTGTATACATCATTGAGCGTCTCATGGTGAACAAGCGAAACGCTCACGAATGTGTATGCACTTATTTGCAATTCTTCAGCGATTCAATAACTTGAAGTGATCACTGTGAACACACTCACACATTGAGGTACAAACAGTGTTCGTCGATCGACTCCTCATTATTCATAGTGAGTGATGTATCATAGAGCACAACCACTCATTTCACTGTTCCACATCAGCATTTCGATGCATGTCATTTTACTACTCCGTCACCATAGGATATGAGTAAAGCTTGAATGCAACTTCTTACTGGAAGGAGCTTCAAATTAGCATATCAGTCATTGGAGTTCAATTTGAGTATTATCACTGAAGGGTTATATATATGTATATAGAAATGCTCGTCCATTTACATGTGAATGTTTATACATTCGTTATTTGTAGATAAACCAGCA                                                                                                 ]
[+] EMBL CD124118             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           TATTATCACTGAAGGGTTATATATATGTATATAGAAATGCTCGTCCATTTACATGTGAATGTTTATACATTCGTTATTTGTAGATAAACCAGCAATGAAGCCAAATGTTCACATGATGCGTAAGTGTACTTATTCTGATGATATTTACAATCCAAACAATTTTTGATTTGTCCTTATAACAAACAGATTTC]




>consensus_9212#0
CTGCTGCTCCCACATTCCCCAGTAGGCATACACACACATCTATCTCAATGTCAGTCGTGC
TTTATGTTTAACTCAACGGATTATCACTTTCATTTTCATCGAACATCCAGCTTTCCAGAA
ATGTGGTCACAATCATCGTATTCCGTTCCATCTGTACATTGTTTGCTCAATCATTTTCTT
TGCAACCATTTCCATTCGAGTGCTTCAACATGCACAGATTGTATACATCATTGAGCGTCT
CATGGTGAACAAGCGAAACGCTCACGAATGTGTATGCACTTATTTGCAATTCTTCAGCGA
TTCAATAACTTGAAGTGATCACTGTGAACACACTCACACATTGAGGTACAAACAGTGTTC
GTCGATCGACTCCTCATTATTCATAGTGAGTGATGTATCATAGAGCAGCACCACTCATTT
CACTGTTCCACATCAGCATTTCGATGCATGTCATTTTACTACTCCGTCACCATAGGATAT
GAGTAAAGCTTGAATGCAACTTCTTACTGGAAGGAGCTTCAAATTAGCATATCAGTCATT
GGAGTTCAATTTGAGTATTATCACTGAAGGGTTATATATATGTATATAGAAATGCTCGTC
CATTTACATGTGAATGTTTATACATTCGTTATTTGTAGATAAACCAGCAATGAAGCCAAA
TGTTCACATGATGCGTAAGTGTACTTATTCTGATGATATTTACAATCCAAACAATTTTTG
ATTTGTCCTTATAACAAACAGATTTC

consensusID : consensus_9212#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 471
fasta sequence

                              [CTGACAATCAACATAAATTAGCAATGAAGCGAGGTGTCAACATGATCCGTAAGTGTACTTATTCTAATGATATTTACAATCCAAACAATTTTTGATTTGTCCTTATAACAAACAGATCGCTGTGAACACACTCACATATTGAGGTACAAACACTGTTCGACGATCAACTCCTCATTATTCATAGTGAGTGATGTTTCATAAAGCACAACCACTCATTTCACTGTTACACATCAGCATTTCGATGCATGTCATTTTGTTACTCTGTCACCGTAGGATATGAGTAAAGCTTGAATGCAACTTCTTACTGGAAGGAGCTTCAAATTAGCATATCAGTCATTGGAGTTCAATTTGAGTATTATCACTGAAGGGT--TATATATATG--TATATAGAAATGCTCGTCCATTTACATTCGACTGTTTATATAATCGTTGTTTGTAGATAAATCAGCAAAGAAGCCAGGTGTCAACATGACC]

[+] EMBL CD165744             [CTGACAATCAACATAAATTAGCAATGAAGCGAGGTGTCAACATGATCCGTAAGTGTACTTATTCTAATGATATTTACAATCCAAACAATTTTTGATTTGTCCTTATAACAAACAGATCGCTGTGAACACACTCACATATTGAGGTACAAACAGTGTTCGTCGATCAACTCCTCATTATTCACAGTGAGTGATGTTTCATAAAGCACAACCACTCATTTCACTGTTCCACATCAGCATTTCGATGCATGTCATTTTATTACTCTGTCACCGTAGGATATGAGTATAGCTTGAATGCAACTTCTTACTGGAAGGAGCTTCAAATTAGCATATCAGTCATTGGAGTTCAATTTGAGTATTATCACTGAAGGGTGCTTTATATATGTTTATATTCGAAGGCTCGTCCATTTA                                                                   ]
[-] EMBL CD162542             [                                                                                                                         GTGAACACACTCACATATTGAGGTACAAACACTGTTCGACGATCAACTCCTCATTATTCATAGTGAGTGATGTTTCATAAAGCACAACCACTCATTTCACTGTTACACATCAGTATTTCGATGCATGTCATTTTGTTACTCTGTCACCGTAGGATATGAGTAAAGCTTGAATGCAACTTCTTACTGGAAGGAGCTTCAAATTAGCATATCAGTCATTGGAGTTCAATTTGAGTATTATCACTGAAGGGT  TATATATATG  TATATAGAAATGCTCGTCCATTTACATTCGACTGTTTATATAATCGTTGTTTGTAGATAAATCAGCAAAGAAGCCAGGTGTCAACATGACC]
[-] EMBL CD162581             [                                                                                                                         GTGAACACACTCACATATTGAGGTACAAACACTGTTCGACGATCAACTCCTCATTATTCATAGTGAGTGATGTTTCATAAAGCACAACCACTCATTTCACTGTTACACATCAGCATTTCGATGCATGTCATTTTGTTACTCTGTCACCGTAGGATATGAGTAAAGCTTGAATGCAACTTCTTACTGGAAGGAGCTTCAAATTAGCATATCAGTCATTGGAGTTCAATTTGAGTATTATCACTGAAGGGT  TATATATATG  TATATAGAAATGCTCGTCCATTTACATTCGACTGTTTATATAATCGTTGTTTGTAGATAAATCAGCAAAGAAGCCAGGTGTCAACATGAtc]




>consensus_9212#1
CTGACAATCAACATAAATTAGCAATGAAGCGAGGTGTCAACATGATCCGTAAGTGTACTT
ATTCTAATGATATTTACAATCCAAACAATTTTTGATTTGTCCTTATAACAAACAGATCGC
TGTGAACACACTCACATATTGAGGTACAAACACTGTTCGACGATCAACTCCTCATTATTC
ATAGTGAGTGATGTTTCATAAAGCACAACCACTCATTTCACTGTTACACATCAGCATTTC
GATGCATGTCATTTTGTTACTCTGTCACCGTAGGATATGAGTAAAGCTTGAATGCAACTT
CTTACTGGAAGGAGCTTCAAATTAGCATATCAGTCATTGGAGTTCAATTTGAGTATTATC
ACTGAAGGGTTATATATATGTATATAGAAATGCTCGTCCATTTACATTCGACTGTTTATA
TAATCGTTGTTTGTAGATAAATCAGCAAAGAAGCCAGGTGTCAACATGACC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9212#0      CTGCTGCTCCCACATTCCCCAGTAGGCATACACACACATCTATCTCAATGTCAGTCGTGC 60
consensus_9212#1      ------------------------------------------------------------
                                                                                  

consensus_9212#0      TTTATGTTTAACTCAACGGATTATCACTTTCATTTTCATCGAACATCCAGCTTTCCAGAA 120
consensus_9212#1      ------------------------------------------------------------
                                                                                  

consensus_9212#0      ATGTGGTCACAATCATCGTATTCCGTTCCATCTGTACATTGTTTGCTCAATCATTTTCTT 180
consensus_9212#1      ------------------------------------------------------------
                                                                                  

consensus_9212#0      TGCAACCATTTCCATTCGAGTGCTTCAACATGCACAGATTGTATACATCATTGAGCGTCT 240
consensus_9212#1      ---------------------CTGACAATCAACATAAATTAGCAATGAAGCGAGGTGTCA 39
                                               ***    ** * ***    *         * *** 

consensus_9212#0      -CATGGTGAACAAGCGAAACGCTCACGAATGTGTATGCACTTATTTGCAATTCTTCAGCG 299
consensus_9212#1      ACATGATCCGTAAGTGTACTTATTCTAATGATATTTACAATC-CAAACAATTTTTGATTT 98
                       **** *    *** * *    *    *   * * * ** *      ***** ** *   

consensus_9212#0      ATTCA-ATAACTTGAAGTGATCACTGTGAACACACTCACACATTGAGGTACAAACAGTGT 358
consensus_9212#1      GTCCTTATAAC--AAACAGATCGCTGTGAACACACTCACATATTGAGGTACAAACACTGT 156
                       * *  *****   **  **** ***************** *************** ***

consensus_9212#0      TCGTCGATCGACTCCTCATTATTCATAGTGAGTGATGTATCATAGAGCAGCACCACTCAT 418
consensus_9212#1      TCGACGATCAACTCCTCATTATTCATAGTGAGTGATGTTTCATAAAGCACAACCACTCAT 216
                      *** ***** **************************** ***** ****  *********

consensus_9212#0      TTCACTGTTCCACATCAGCATTTCGATGCATGTCATTTTACTACTCCGTCACCATAGGAT 478
consensus_9212#1      TTCACTGTTACACATCAGCATTTCGATGCATGTCATTTTGTTACTCTGTCACCGTAGGAT 276
                      ********* *****************************  ***** ****** ******

consensus_9212#0      ATGAGTAAAGCTTGAATGCAACTTCTTACTGGAAGGAGCTTCAAATTAGCATATCAGTCA 538
consensus_9212#1      ATGAGTAAAGCTTGAATGCAACTTCTTACTGGAAGGAGCTTCAAATTAGCATATCAGTCA 336
                      ************************************************************

consensus_9212#0      TTGGAGTTCAATTTGAGTATTATCACTGAAGGGTTATATATATGTATATAGAAATGCTCG 598
consensus_9212#1      TTGGAGTTCAATTTGAGTATTATCACTGAAGGGTTATATATATGTATATAGAAATGCTCG 396
                      ************************************************************

consensus_9212#0      TCCATTTACATGTGAATGTTTATACATTCGTTATTTGTAGATAAACCAGCAATGAAGCCA 658
consensus_9212#1      TCCATTTACATTCGACTGTTTATATAATCGTTGTTTGTAGATAAATCAGCAAAGAAGCCA 456
                      ***********  ** ******** * ***** ************ ****** *******

consensus_9212#0      AATGTTCACATGATGCGTAAGTGTACTTATTCTGATGATATTTACAATCCAAACAATTTT 718
consensus_9212#1      GGTGTCAACATGACC--------------------------------------------- 471
                        ***  ******                                               

consensus_9212#0      TGATTTGTCCTTATAACAAACAGATTTC 746
consensus_9212#1      ----------------------------