cluster # 9223

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Schistosoma mansoni
cluster # 9223 cluster # 9223 Sequences # 9 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9223#0 length = 808 sequences # 8

consensus_9223#1 length = 483 sequences # 1

consensusID : consensus_9223#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 8
consensus length = 808
fasta sequence

                              [ATGTCATTTGCAAAATTCAGAAGAAGTATGATCTCAGATAACCTGCCAATGGATGAAGAGCATAAGTATCAAGGTCGCAATCTGTCTCATGACGATTCAACAGCTTTTGCAAGAGATTCAAAATTTAGAAAACCAATACATAGCATTGAAGGTCAAATTGGAACTCCACTTGTTCCTAGACATAGCTTTGAAGACAAACATACCAATAAGAGTAAGGTGGATCCACAAATTAAAACGGAGAAACCGAAAACACAACCTTTGGACATAAAAGCACGTAATTTGGAAGAAAACCATGGAAAATCTAAGAAAGATCAAGAACGTGATGAACTTGTTAAACGAAATAAAACACATCACCAGTCATTAAGATCTAAACAAAACAAACCCCATGGATCTATATCTTCAAAAAATGATCGTATTTCATCTTGGGTTGAAAATAGTAGATATCAAACAAGGCAATTATTACAAGATGGTATGATTGACGTCGTTCCTCAAGCTCAACCTCAAAAATCTGATTTGACAAGACACCAATCTTTAAATGAAAAACAGAACTCCTACAGAACTAATAACAAGATGAAATATAGGCATCCTGATGATCCTTCAAGGGAACCCATAAAGAAGGACAGTATAAGTTCTGATCAGAAAGATCCTACAAAACCACTGGATAATAATCAACTAAAGAAAACTGACAATTTAAAAGACATTCATAAGAAATCTATGACTGAAAAACAACACGACCGAAATAAGAAAGATAATATTCCAAAAACAACTGAGCATAAACAGGAAAAGAAATATTCACCTAACAGTCCAC]

[+] EMBL CD116926             [ATGTCATTTGCAAAATTCAGAAGAAGTATGATCTCAGATAACCTGCCAATGGATGAAGAGCATAAGTATCAAGGTCGCAATCTGTCTCATGACGATTCAACAGCTTTTGCAAGAGATTCAAAATTTAGAAAACCAATACATAGCATTGAAGGTCAAATTGGAACTCCACTTGTTCCTAGACATAGCTTTGAAGACAAACATACCAATAAGAGTAAGGTGGATCCACAAATTAAAACGGAGAAACCGAAAACACAACCTTTGGACATAAAAGCACGTAATTTGGAAGAAAACCATGGAAAATCTAAGAAAGATCAAGAACGTGATGAACTTGTTAAACGAAATAAAACACATCACCAGTCATTAAGATCCAAACAAAACAAACCCCATGGATCTATATCTTCAAAAAATGATCGTATTTCATCTTGGGTTGAAAATAGTAGATATCAAACAAGGCAATTATTACAAGATGGTATGATTGACGTCGTTC                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL CD121830             [                                                                                                                                                                                                                                                                                                                                      ACTTGTTAAACGAAATAAAACACATCACCAGTCATTAAGATCTAAACAAAACAAACCCCATGGATCTATATCTTCAAAAAATGATCGTATTTCATCTTGGGTTGAAAATAGTAGATATCAAACAAGGCAATTATTACAAGATGGTATGATTGACGTCGTTCCTCAAGCTCAACCTCAAAAATCTGATTTGACAAGACACCAATCTTTAAATGAAAAACAGAACTCCTACAGAACTAATAACAAGATGAAATATAGGCATCCTGATGATCCTTCAAGGGAACCCATAAAGAAGGACAGTATAAGTTCTGATCAGAAAGATCCTACAAAACCACTGGATAATAATCAACTAAAGAAAACTGACAATTTAAAAGACATTCATAAGAAATCTATGACTGAAAAACAACACGACCGAAATAAGAAAGATAATATTCCAAAAACAACTGAGCATAAACAGGAAAAGAAATATTCACCTAACAGTCCA ]
[+] EMBL CD121845             [                                                                                                                                                                                                                                                                                                                                      ACTTGTTAAACGAAATAAAACACATCACCAGTCATTAAGATCTAAACAAAACAAACCCCATGGATCTATATCTTCAAAAAATGACCGTATTTCATCTTGGGTTGAAAATAGTAGATATCAAACAAGGCAATTATTACAAGATGGTATGATTGACGTCGTTCCTCAAGCTCAACCTCAAAAATCTGATTTGACAAGACACCAATCTTTAAATGAAAAACAGAACTCCTACAGAACTAATAACAAGATGAAATATAGGCATCCTGATGATCCTTCAAGGGAACCCATAAAGAAGGACAGTATAAGTTCTGATCAGAAAGATCCTACAAAACCACTGGATAATAATCAACTAAAGAAAACTGACAATTTAAAAGACATTCATAAGAAATCTATGACTGAAAAACAACACGACCGAAATAAGACAGATA                                                         ]
[-] EMBL CD121888             [                                                                                                                                                                                                                                                                                                                                                                    GTCATTAAGATCTTAGCTGTACTAACCCCATGGATCTATATCTTCAAAAAATGATCGTATTTCATCTTGGGTTGAAAATAGTAGATATCAAACAAGGCAATTATTACAAGATGGTATGATTGACGTCGTTCCTCAAGCTCAACCTCAAAAATCTGATTTGACAAGACACCAATCTTTAAATGAAAAACAGAACTCCTACAGAACTAATAACAAGATGAAATATAGGCATCCTGATGATCCTTCAAGGGAACCCATAAAGAAGGACAGTATAAGTTCTGATCAGAAAGATCCTACAAAACCACTGGATAATAATCAACTAAAGAAAACTGACAATTTAAAAGACATTCATAAGAAATCTATGACTGAAAAACAACGCGACCGAAATAAGAAAGATAATATTCCAAAAACAACTGAGCATAAACAGGAAAAGAAATATTCACCTAACAGTCCAC]
[-] EMBL BE519395             [                                                                                                                                                                                                                                                                                                                                                                                              CCCATGGATCTATATCTTCAAAAAATGATCGTA TTCATCTTGGGTTGAAAATAGTAGATATCAAACAAGGCAATTATTACAAGATGGTATGATTGACGTCGTTCCTCAAGCTCAACCTCAAAAATCTGATTTGACAAGACACCAATCTTTAAATGAAAAACAGAACTCCTACAGAACTAATAACAAGATGAAATATAGGCATCCTGATGATCCTTCAAGGGAACCCATAAAGAAGGACAGTATAAGTTCTGATCAGAAAGATCCTACAAAACCACTGGATAATAATCAACTAAAGAAAACTGACAATTTAAAAGACATTCATAAGAA                                                                                                  ]
[-] EMBL CD121995             [                                                                                                                                                                                                                                                                                                                                                                                                    GATCTATATCTTCAAAAAATGATCGTATTTCATCTTGGGTTGAAAATAGTAGATATCAAACAAGGCAATTATTACAAGATGGTATGATTGACGTCGTTCCTCAAGCTCAACCTCAAAAATCTGATTTGACAAGACACCAATCTTTAAATGAAAAACAGAACTCCTACAGAACTAATAACAAGATGAAATATAGGCATCCTGATGATCCTTCAAGGGAACCCATAAAGAAGGACAGTATAAGTTCTGATCAGAAAGATCCTACAAAACCACTGGATAATAATCAACTAAAGAAAACTGACAATTTAAAAGACATTCATAAGAAATCTATGACTGAAAAACAACACGACCGAAATAAGAAAGATAATATTCCAAAAACAACTGAGCATAAACAGGAAAAGAAATATTCACCTAACAGTCCAC]
[-] EMBL CD121962             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                   GGCAATTATTACAAGATGGTATGATNGACGTCGTTCCTCAAGCTCAACCTCAAAAATCTGATTTGACAAGACACCAATCTTTAAATGAAAAACAGAACTCCTACAGAACTAATAACAAGATGAAATATAGGCATCCTGATGATCCTTCAAGGGAACCCATAAAGAAGGACAGTATAAGTTCTGATCAGAAAGATCCTACAAAACCACTGGATAATAATCAACTAAAGAAAACTGACAATTTAAAAGACATTCATAAGAAATCTATGACTGAAAAACAACACGACCGAAATAAGAAAGATAATATTCCAAAAACAACTGAGCATAAACAGGAAAAGAAATATTCACCTAACAGTCCAC]
[-] EMBL CD091755             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            GAACTAATAACGAGATGAAATATAGGCATCCTGATGATCCTTCAAGGGAACCCATAAAGAAGGACAGTATAAGTTCTGATCAGAAAGATCCTACAAAACCACTGGATAATAATCAACTAAAGAAAACTGACAATTTAAAAGACATTCATAAGAAATTTATG                                                                                           ]




>consensus_9223#0
ATGTCATTTGCAAAATTCAGAAGAAGTATGATCTCAGATAACCTGCCAATGGATGAAGAG
CATAAGTATCAAGGTCGCAATCTGTCTCATGACGATTCAACAGCTTTTGCAAGAGATTCA
AAATTTAGAAAACCAATACATAGCATTGAAGGTCAAATTGGAACTCCACTTGTTCCTAGA
CATAGCTTTGAAGACAAACATACCAATAAGAGTAAGGTGGATCCACAAATTAAAACGGAG
AAACCGAAAACACAACCTTTGGACATAAAAGCACGTAATTTGGAAGAAAACCATGGAAAA
TCTAAGAAAGATCAAGAACGTGATGAACTTGTTAAACGAAATAAAACACATCACCAGTCA
TTAAGATCTAAACAAAACAAACCCCATGGATCTATATCTTCAAAAAATGATCGTATTTCA
TCTTGGGTTGAAAATAGTAGATATCAAACAAGGCAATTATTACAAGATGGTATGATTGAC
GTCGTTCCTCAAGCTCAACCTCAAAAATCTGATTTGACAAGACACCAATCTTTAAATGAA
AAACAGAACTCCTACAGAACTAATAACAAGATGAAATATAGGCATCCTGATGATCCTTCA
AGGGAACCCATAAAGAAGGACAGTATAAGTTCTGATCAGAAAGATCCTACAAAACCACTG
GATAATAATCAACTAAAGAAAACTGACAATTTAAAAGACATTCATAAGAAATCTATGACT
GAAAAACAACACGACCGAAATAAGAAAGATAATATTCCAAAAACAACTGAGCATAAACAG
GAAAAGAAATATTCACCTAACAGTCCAC

consensusID : consensus_9223#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 483
fasta sequence

                              [AAACGGACTTGCTGTCATAGTGAAAGTACAAATTTCCTGCCCAAGGCCCTAAAGCATAATGATATACGCCAAAATCATGATATGATGACGATCTAGCGCGTTTTGCAAGAGAAACAGGATGAAAAACACCAATACATAGCGGTGAGGGGACCATTGTACCTTCACTTGTTCCTAGACATAACTCCGAAGACAGACATACCAATATGAGCAAGGTGGATCCACAAATTAAAACGGTTAAACCGAAAACACAACCTTTGGACATAAACGCACGTGATTTGGAAGAAAACCATGGAAAATCTAAGAAAGATCAAAAACGCGATGAACTTGTTAAACGAAATAAAACACATCACCAGGCATTAAGATCCAGACAAAACATACCCCATGGATCTATATCTTCAAAAGATGATCGCATTTCATCTTGGGCTGAAAATAGTAGATATCAAACAAGGCAATTATTACAAGATGGTCTGATTGACGTCGTTC]

[+] EMBL CD116927             [AAACGGACTTGCTGTCATAGTGAAAGTACAAATTTCCTGCCCAAGGCCCTAAAGCATAATGATATACGCCAAAATCATGATATGATGACGATCTAGCGCGTTTTGCAAGAGAAACAGGATGAAAAACACCAATACATAGCGGTGAGGGGACCATTGTACCTTCACTTGTTCCTAGACATAACTCCGAAGACAGACATACCAATATGAGCAAGGTGGATCCACAAATTAAAACGGTTAAACCGAAAACACAACCTTTGGACATAAACGCACGTGATTTGGAAGAAAACCATGGAAAATCTAAGAAAGATCAAAAACGCGATGAACTTGTTAAACGAAATAAAACACATCACCAGGCATTAAGATCCAGACAAAACATACCCCATGGATCTATATCTTCAAAAGATGATCGCATTTCATCTTGGGCTGAAAATAGTAGATATCAAACAAGGCAATTATTACAAGATGGTCTGATTGACGTCGTTC]




>consensus_9223#1
AAACGGACTTGCTGTCATAGTGAAAGTACAAATTTCCTGCCCAAGGCCCTAAAGCATAAT
GATATACGCCAAAATCATGATATGATGACGATCTAGCGCGTTTTGCAAGAGAAACAGGAT
GAAAAACACCAATACATAGCGGTGAGGGGACCATTGTACCTTCACTTGTTCCTAGACATA
ACTCCGAAGACAGACATACCAATATGAGCAAGGTGGATCCACAAATTAAAACGGTTAAAC
CGAAAACACAACCTTTGGACATAAACGCACGTGATTTGGAAGAAAACCATGGAAAATCTA
AGAAAGATCAAAAACGCGATGAACTTGTTAAACGAAATAAAACACATCACCAGGCATTAA
GATCCAGACAAAACATACCCCATGGATCTATATCTTCAAAAGATGATCGCATTTCATCTT
GGGCTGAAAATAGTAGATATCAAACAAGGCAATTATTACAAGATGGTCTGATTGACGTCG
TTC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9223#0      ATGTCATTTGCAAAATT-CAGAAGAAGTATGATCTCAGATAACCTGCCAATGGATGAAGA 59
consensus_9223#1      -------AAACGGACTTGCTGTCATAGTGAAAGTACAAATTTCCTGCCCAAGGCCCTAAA 53
                                *  * ** * *    ***   *   ** **  ****** * **    * *

consensus_9223#0      GCATAAGTATCAAGGTCGCAATCT--GTCTCATGACGATTCAACAGCTTTTGCAAGAGAT 117
consensus_9223#1      GCATAATGATATACGCCAAAATCATGATATGATGACGATCTAGCGCGTTTTGCAAGAGAA 113
                      ******  **  * * *  ****    * * ********  * *   ************ 

consensus_9223#0      TCAAAATTTAGAAAACCAATACATAGCATTGAAGGTCAAATTGGAACTCCACTTGTTCCT 177
consensus_9223#1      ACAGGATGAAAAACACCAATACATAGCGGTGAGGGGACCATTGTACCTTCACTTGTTCCT 173
                       **  **  * ** *************  *** **    **** * ** ***********

consensus_9223#0      AGACATAGCTTTGAAGACAAACATACCAATAAGAGTAAGGTGGATCCACAAATTAAAACG 237
consensus_9223#1      AGACATAACTCCGAAGACAGACATACCAATATGAGCAAGGTGGATCCACAAATTAAAACG 233
                      ******* **  ******* *********** *** ************************

consensus_9223#0      GAGAAACCGAAAACACAACCTTTGGACATAAAAGCACGTAATTTGGAAGAAAACCATGGA 297
consensus_9223#1      GTTAAACCGAAAACACAACCTTTGGACATAAACGCACGTGATTTGGAAGAAAACCATGGA 293
                      *  ***************************** ****** ********************

consensus_9223#0      AAATCTAAGAAAGATCAAGAACGTGATGAACTTGTTAAACGAAATAAAACACATCACCAG 357
consensus_9223#1      AAATCTAAGAAAGATCAAAAACGCGATGAACTTGTTAAACGAAATAAAACACATCACCAG 353
                      ****************** **** ************************************

consensus_9223#0      TCATTAAGATCTAAACAAAACAAACCCCATGGATCTATATCTTCAAAAAATGATCGTATT 417
consensus_9223#1      GCATTAAGATCCAGACAAAACATACCCCATGGATCTATATCTTCAAAAGATGATCGCATT 413
                       ********** * ******** ************************* ******* ***

consensus_9223#0      TCATCTTGGGTTGAAAATAGTAGATATCAAACAAGGCAATTATTACAAGATGGTATGATT 477
consensus_9223#1      TCATCTTGGGCTGAAAATAGTAGATATCAAACAAGGCAATTATTACAAGATGGTCTGATT 473
                      ********** ******************************************* *****

consensus_9223#0      GACGTCGTTCCTCAAGCTCAACCTCAAAAATCTGATTTGACAAGACACCAATCTTTAAAT 537
consensus_9223#1      GACGTCGTTC-------------------------------------------------- 483
                      **********                                                  

consensus_9223#0      GAAAAACAGAACTCCTACAGAACTAATAACAAGATGAAATATAGGCATCCTGATGATCCT 597
consensus_9223#1      ------------------------------------------------------------
                                                                                  

consensus_9223#0      TCAAGGGAACCCATAAAGAAGGACAGTATAAGTTCTGATCAGAAAGATCCTACAAAACCA 657
consensus_9223#1      ------------------------------------------------------------
                                                                                  

consensus_9223#0      CTGGATAATAATCAACTAAAGAAAACTGACAATTTAAAAGACATTCATAAGAAATCTATG 717
consensus_9223#1      ------------------------------------------------------------
                                                                                  

consensus_9223#0      ACTGAAAAACAACACGACCGAAATAAGAAAGATAATATTCCAAAAACAACTGAGCATAAA 777
consensus_9223#1      ------------------------------------------------------------
                                                                                  

consensus_9223#0      CAGGAAAAGAAATATTCACCTAACAGTCCAC 808
consensus_9223#1      -------------------------------