These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9228#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 858 fasta sequence [AGCCTTATTCGGCACCGGGGGATTGTACCACATGTAAAAATTCAAAGGGAAAATTTCATTCAAGAACG-TTGATTTCAAATA-TTCCGCTCAAACTGAGAGACGGGTTCTTAAGAACTTTTCACACACTGTTAAACCTGGTCAAACGGTTGCATTAGTTGGACCTTCTGGTTGTGGGAAATCAACACTGCTTCAGTTAGTATTGAGATTCTACGATCCATTGTATCACGGTTCCGATAATGGTGTGTTTTTCGATGATATCAACATCAGAAATATTGCACCTAGTTGGGTTAGAAAACAGATTGGTCTTGTTTCACAAGAACCCACTTTATTCGATCTCACCATAAGAGAGAATATTGCGTATGGAGACAATAGTCGAGAAGTGACAATGGAAGAGATTATTGAGGCAGCACGTGCAGCTAACATCCATGATTTTATTACAACAC-TTCCAGAGCAATATGAAACCAAAGTTGGACAACGTGGATCAAAGCTATCTGGAGGACAGAAACAGAGGATAGCCATTGCACGAGCTTTAGTTCGTAAACCTGTTTTGCTTGTGTTGGACGAAGCCACTTCAGCTTTAGACAATGAGAGTGAGCGTATAGTTCAAGAAGCTCTTGATGCTGCCATGGGGTCGAGAACATCATTAGTTGTTGCCCATCGTCTATCGACAATTGTCAATGCTGATTTGGTAGTAGTTTTACGGGATGGATGTAAGATAGAGTCTGGACCTCCAGCAGCATTGCTCGCTAAGAAAGGAGCTTTCTATGCATTGCACCACATGGAGAATTAAATCAACTCATCAAACTCGTTCATCATTACACATCTTTTTGG-TG-TT-TAATTTTGATATAATATTATTTT] [+] EMBL CD081798 [AGCCTTATTCGGCACCGGGGGATTGTACCACATGTAAAAATTCAAAGGGAAAATTTCATTCAAGAACG TTGATTTCAAATA TTCCGCTCAAACTGAGAGACGGGTTCTTAAGAACTTTT ACACACTGTTAAACCTGGTCAAACGGTTGCATTAGTTGGACCTTCTGGTTGTGGGAAATCAACACTGCTTCAGTTAGTATTGAGATTCTACGATCCATTGTATCACGGTTCCGATAATGGTGTGTTTTTCGATGATATCAACATCAGAAATATTGCACCTAGTTGGGTTAGAAAACAGATTGGTCTTGTTTCACAAGAACCCACTTTATTCGATCTCACCATAAGAGAGAATATTGCGTATGGAGACAATAGTCGAGAAGTGACAATGGAAGAGATTATTGAGGCAGCACGTGCAGCTAACATCCATGATTTTATTACAACAC TTCCAGAGCAATATGAAACCAAAGTTGGACAACGTGGATCAAAGCTATCTGGAGGACAGAAACAGAGGATAGCCATTGCACGAGCTTTAGTTCGTAAACCTGTTTTGCTTGTGTTGGACGAAGCCACTTCAGCTTTAGACAATGAGAGTGAGCGTATAGTTCAAGAAGCTCTTGATGCTGCCATGGGGTCGAGAACATCATTAGTTGTTGCCCATCGTCTATCGACAATTGTCAATGCTGATTTGGTAGTAGTTTTACGGGATGGATGTAAGATAGAGTCTGGACCTCCAGCAGCATTGCTCGCTAAGAAAGGAGCTTTCTATGCATTGCACCACATGGAGAATTAAATCAACTCATCANACTCGTTCATCATTACACATCTTTTTGGNTG TT TAATTTTGATATAATATTATTT ] [+] EMBL CD081805 [ aggnanAACGNTTGATTTCAAATATTTCCGCTCAAACTGCGAGACGGGTTCTTAAGAACTTTTCACACACTGTTAAACCTGGTCAAACGGTTGCATTAGTTGGACCTTCTGGTTGTGGGAAATCAACACTGCTTCAGTTAGTATTGAGATTCTACGATCCATTGTATCACGGTTCCGATAATGGTGTGTTTTTCGATGATATCAACATCAGAAATATTGCACCTAGTTGGGTTAGAAAACAGATTGGTCTTGTTTCACAAGAACCCACTTTATTCGATCTCACCATAAGAGAGAATATTGCGTATGGAGACAATAGTCGAGAAGTGACAATGGAAGAGATTATTGAGGCAGCACGTGCAGCTAACATCCATGATTTTATTACAACAC TTCCAGAGCAATATGAAACCAAAGTTGGACAACGTGGATCAAAGCTATCTGGAGGACAGAAACAGAGGATAGCCATTGCACGAGCTTTAGTTCGTAAACCTGTTTTGCTTGTGTTGGACGAAGCCACTTCAGCTTTAGACAATGAGAGTGAGCGTATAGTTCAAGAAGCTCTTGATGCTGCCATGGGGTCGAGAACATCATTAGTTGTTGCCCATCGTCTATCGACAATTGTCAATGCTGATTTGGTAGTAGTTTTACGGGATGGATGTAAGATAGAGTCTGGACCTCCAGCAGCATTGCTCGCTAAGAAAGGAGCTTTCTATGCATTGCACCACATGGAGAATTAAATCAACTCATCAAACTCGTTCATCATTACACATCTTTTTGG TG TTNTAATTNTGATATAATATTATTT ] [+] EMBL CD137688 [ TGATTTCAAATA TTCCGCTCAAACTGAGAGACGGGTTCTTAAGAACTTTTCACACACTGTTAAACCTGGTCAAACGGTTGCATTAGTTGGACCTTCTGGTTGTGGGAAATCAACACTGCTTCAGTTAGTATTGAGATTCTACGATCCATTGTATCACGGTTCCGATAATGGTGTGTTTTTCGATGATATCAACATCAGAAATATTGCACCTAGTTGGGTTAGAAAACAGATTGGTCTTGTTTCACAAGAACCCACTTTATTCGATCTCACCATAAGAGAGAATATTGCGTATGGAGACAATAGTCGAGACGTGACAATGGTACACATTATTGAGGCACCACGTGCACCTCACATCCATGATATTATTACAATACTTTCCAG ] [+] EMBL CD167476 [ GTTAAACCTGGTCAAACGGTTGCATTAGTTGGGCCTTCTGGTTGTGGGAAATCAACACTGCTTCAGTTAGTATTGAGATTCTACGATCCATTGTATCACGGTTCCGATAATGGTGTGTTTTTCGATGATATCAACATCAGAAATATTGCACCTAGTTGGGTTAGAAAACAGATTGGTCTTGTTTCACAAGAACCCACTTTGTTCGATCTCACCATAAGAGAGAATATTGCGTATGGAGACAATAGTCGAGAAGTGACAATGGAAGAGATTATTGAGGCAGCACGTGCAGCTAACATCCATGATTTTATTACAACAC TTCCAGAGCA ] [-] EMBL CD075536 [ AACGGTTGCATTAGTTGGACCTTCTGGTTGTGGGAAATCAACACTGCTTCAGTTAGTATTGAGATTCTACGATCCATTGTATCACGGTTCCGATAATGGTGTGTTTTTCGATGATATCAACATCAGAAATATTGCACCTAGTTGGGTTAGAAAACAGATTGGTCTTGTTTCACAAGAACCCACTTTATTCGATCTCACCATAAGAGAGAATATTGCGTATGGAGACAATAGTCGAGAAGTGACAATGGAAGAGATTATTGAGGCAGCACGTGCAGCTAACATCCATGATTTTATTACAACAC TTCCAGAGCAATATGAAACCAAAGTTGGACAACGTGGATCAAAGCTATTTGGAGGACAGAAACAGAGGATAGCCATTGCCCGAGCTTTAGTTCGTAAACCTGTTTTGCTTGTGTTGGACGAAGCCACTTCAGCTTTAGACAATGAGAGTGAGCGTATAGTTCAAGAAGCTCTTGATGCTGCCATGGGGTCGAGAACATCATTAGTTGTTGCCCATCGTCTATCGACAATTGTCAATGCTGATTTGGTAGTAGTTTTACGGGATGGATGTAAGATAGAGTTTGGACCTCCAGCAGCATTGCTCGCTAAGAAAGGAGCTTTTTATGCATTGCGCCACATGGAGAATTAAATCAAAACATCAAACTCGTTCATCATTACACATCTTTTTGG TGTTT TAATTTTGATAGAATTTTATTTT] [-] EMBL CD075529 [ GGTTGCATTAGTTGGACCTTCTGGTTGTGGGAAATCAACACTGCTTCAGTTAGTATTGAGATTCTACGATCCATTGTATCACGGTTCCGATAATGGTGTGTTTTTCGATGATATCAACATCAGAAATATTGCACCTAGTTGGGTTAGAAAACAGATTGGTCTTGTTTCACAAGAACCCACTTTATTCGATCTCACCATAAGAGAGAATATTGCGTATGGAGACAATAGTCGAGAAGTGACAATGGAAGAGATTATTGAGGCAGCACGTGCAGCTAACATCCATGATTTTATTACAACAC TTCCAGAGCAATATGAAACCAAAGTTGGACAACGTGGATCAAAGCTATCTGGAGGACAGAAACAGAGGATAGCCATTGCACGAGCTTTAGTTCGTAAACCTGTTTTGCTTGTGTTGGACGAAGCCACTTCAGCTTTAGACAATGAGAGTGAGCGTATAGTTCAAGAAGCTCTTGATGCTGCCATGGGGTCGAGAACATCATTAGTTGTTGCCCATCGTCTATCGACAATTGTCAATGCTGATTTGGTAGTAGTTTTACGGGATGGATGTAAGATAGAGTCTGGACCTCCAGCAGCATTGCTCGCTAAGAAAGGAGCTTTTTATGCATTGCACCACATGGAGAATTAAATCAACTCATCAAACTCGTTCATCATTACACATCTTTTTGG TGTTT TAATTTTGATATAGGATTA ] [+] EMBL CD079199 [ GGTTGTGGGAAATCAACACTGCTTCAGTTAGTATTGAGATTCTACGATCCGTCATACCATGGTCCCGATAGTGGTGTGTTTTTCGATGATATCAACATCAGAAATATTGCACCTAGTTGGGTTAGAAAACAGATTGGTCTTGTTTCACAAGAACCCACTTTATTCGATCTCACCATAAGAGAGAATATTGCGTATGGAGACAATAGTCGAGAAGTGACAATGGAAGAGATTATTGAGGCAGCACGTGCAGCTAACATCCATGATTTTATTACAACAC TTCCAGAGCAATATGAAACCAAAGTTGGACAACGTGGATCAAAGCTATCTGGAGGACAGAAACAGAGGATAGCCATTGCACGAGCTTTAGTTCGTAAACCTGTTTTGCTTGTGTTGGACGAAGCCACTTCAGCTTTAGACAATGAGAGTGAGCGTATAGTTCAAGAAGCTCTTGATGCTGCCATGGGGTCGAGAACATCATTAGTTGTTGCCCATCGTCTATCGACAATTGTCAATGCTGATCTGGTAGTAGTATTACAGGATGGACGTAAGATAGAGTCAGGACCTCCAGCAGCACTGCTCGCTAAGAAAGGAGCTTTCTATGCATTGCAt ] consensusID : consensus_9228#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 352 fasta sequence [CCGACGGCTCACGGAACTTTCACACACTGTT-ACCTGGTCAAACGGTTGCATTAGTTGGACCTTCTGGTTGTGGGAAATCAACACTGCTTCAGTTAGTATTGAGATTCTACGATCCATTGTATCACGGTTCCGATAATGGTGTGTTTTTCGATGATATCAACATCAGAAATATTGCACCTAGTTGGGTTAGAAAACAGATTGGTCTTGTTTCACAAGAACCCACTTTATTCGATCTCACCATAAGAGAGAATATTGCGTATGGAGACAATAGTCGAGAAGTGACAATGGAAGAGATTATTGAGGCAGCACGTGCAGCTAACATCCATGATTTTATTACAACACTTCCAGAGCA] [+] EMBL CD167236 [CCGACGGCTCACGGAACTTTCACACACTGTT ACCTGGTCAAACGGTTGCATTAGTTGGACCTTCTGGTTGTGGGAAATCAACACTGCTTCAGTTAGTATTGAGATTCTACGATCCATTGTATCACGGTTCCGATAATGGTGTGTTTTTCGATGATATCAACATCAGAAATATTGCACCTAGTTGGGTTAGAAAACAGATTGGTCTTGTTTCACAAGAACCCACTTTATTCGATCTCACCATAAGAGAGAATATTGCGTATGGAGACAATAGTCGAGAAGTGACAATGGAAGAGATTATTGAGGCAGCACGTGCAGCTAACATCCATGATTTTATTACAACACTTCCAGAGCA] [+] EMBL CD065786 [ CACGGAACTTTCACACACTGTTAAACCGGTC AACGGTTGCATTAGTTGGGCCTTCTGGTTGTGGGAAATCAACACTGCTTCAGTTAGTATTGAGATTCTACGATCCATTGTATCACGGTTCCGATAATGGTGTGTTTTTCGATGATATCAACATCAGAAATATTGCACCTAGTTGGGTTAGAAAACAGATTGGTCTTGTTTCACAAGAACCCACTTTGTTCGATCTCACCATAAGAGAGAATATTGCGTATGGAGACAATAGTCGAGAAGTGACAATGGAAGAGATTATTGAGGCAGCACGTGCAGCTAACATCCATGATTTTATTACAACACTTCCAGAGCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9228#0 AGCCTTATTCGGCACCGGGGGATTGTACCACATGTAAAAATTCAAAGGGAAAATTTCATT 60 consensus_9228#1 ------------------------------------------------------------ consensus_9228#0 CAAGAACGTTGATTTCAAATATTCCGCTCAAACTGAGAGACGGGTTCTTAAGAACTTTTC 120 consensus_9228#1 ---------------------------------------CCGACGGCTCACGGAACTTTC 21 ** ** * * * **** consensus_9228#0 ACACACTGTTAAACCTGGTCAAACGGTTGCATTAGTTGGACCTTCTGGTTGTGGGAAATC 180 consensus_9228#1 ACACACTGTTA--CCTGGTCAAACGGTTGCATTAGTTGGACCTTCTGGTTGTGGGAAATC 79 *********** *********************************************** consensus_9228#0 AACACTGCTTCAGTTAGTATTGAGATTCTACGATCCATTGTATCACGGTTCCGATAATGG 240 consensus_9228#1 AACACTGCTTCAGTTAGTATTGAGATTCTACGATCCATTGTATCACGGTTCCGATAATGG 139 ************************************************************ consensus_9228#0 TGTGTTTTTCGATGATATCAACATCAGAAATATTGCACCTAGTTGGGTTAGAAAACAGAT 300 consensus_9228#1 TGTGTTTTTCGATGATATCAACATCAGAAATATTGCACCTAGTTGGGTTAGAAAACAGAT 199 ************************************************************ consensus_9228#0 TGGTCTTGTTTCACAAGAACCCACTTTATTCGATCTCACCATAAGAGAGAATATTGCGTA 360 consensus_9228#1 TGGTCTTGTTTCACAAGAACCCACTTTATTCGATCTCACCATAAGAGAGAATATTGCGTA 259 ************************************************************ consensus_9228#0 TGGAGACAATAGTCGAGAAGTGACAATGGAAGAGATTATTGAGGCAGCACGTGCAGCTAA 420 consensus_9228#1 TGGAGACAATAGTCGAGAAGTGACAATGGAAGAGATTATTGAGGCAGCACGTGCAGCTAA 319 ************************************************************ consensus_9228#0 CATCCATGATTTTATTACAACACTTCCAGAGCAATATGAAACCAAAGTTGGACAACGTGG 480 consensus_9228#1 CATCCATGATTTTATTACAACACTTCCAGAGCA--------------------------- 352 ********************************* consensus_9228#0 ATCAAAGCTATCTGGAGGACAGAAACAGAGGATAGCCATTGCACGAGCTTTAGTTCGTAA 540 consensus_9228#1 ------------------------------------------------------------ consensus_9228#0 ACCTGTTTTGCTTGTGTTGGACGAAGCCACTTCAGCTTTAGACAATGAGAGTGAGCGTAT 600 consensus_9228#1 ------------------------------------------------------------ consensus_9228#0 AGTTCAAGAAGCTCTTGATGCTGCCATGGGGTCGAGAACATCATTAGTTGTTGCCCATCG 660 consensus_9228#1 ------------------------------------------------------------ consensus_9228#0 TCTATCGACAATTGTCAATGCTGATTTGGTAGTAGTTTTACGGGATGGATGTAAGATAGA 720 consensus_9228#1 ------------------------------------------------------------ consensus_9228#0 GTCTGGACCTCCAGCAGCATTGCTCGCTAAGAAAGGAGCTTTCTATGCATTGCACCACAT 780 consensus_9228#1 ------------------------------------------------------------ consensus_9228#0 GGAGAATTAAATCAACTCATCAAACTCGTTCATCATTACACATCTTTTTGGTGTTTAATT 840 consensus_9228#1 ------------------------------------------------------------ consensus_9228#0 TTGATATAATATTATTTT 858 consensus_9228#1 ------------------ |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||