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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9232#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1170 fasta sequence
[GGATATGTTTACTCGACCATTACTAGGCGCACAATCTGTCGAAGATGCTCGCAAACTATTAGCCCTGAGTGTAGGTAGTAAACGTTCTTCCCAGAGACGTTTACCAGTGTTCACTTTCCCAAATCACTTTGATTACAATAATACTCATAATGTTGCTCAGTCTTTGTTCATTACGTCACCAGTTCGACCATATGCTGGTATTGGGTTTGGACATTTGAAATCGCAACATTACAACAATTCTAATGTATCATCGTCTATAGGATCATCTTATCAAGTAAATAATAATACTATCATGCAAATGTCAAATAACAGCACATCTAAACCATCATCTACCACTAATGCTACTATTTCCACATGTTCTAATCATTTGCACCATCATCATTATAGTCATGCTCAGATTATATATCCACAACCGACTCGATGTTATTCCACTCCTATCGGTACATCAGGCAGTAAAAGTCTACTGTTGCATAATCTTATCCCAATACCATCTCGTTTAGCTACTAATATGAAAGATAGTGGGAATAGCAATTCTACATCGAATCAAATGTATGCTATGCTACCAAATCAAAGAGATCCTTCTCATTTGCATCAGCAGCAGCATTCTTTAATCCATCACCAACAGACATCAGCATCTCCACCTGATAACCGAGGCCAATCTACTATGAAACATCAATATTTTAGTCAGGCAACAAATCAGAATACAAATCATCAATACCAACAACAACCAAATCCACAGTCCCTGTCAAACTTCATAGGATCTCGTCTAACATTGAATCCTAATACTGCTGCAGTGCTACATCCATCTTGTCGTGGTATTTCCCTGCAGCAACAGATGACTTGTCCATATCGGTCTACTCATTTATCTGGTGAAGGTGCCTATCCCCCATATCAACAACAGGCAACGGTACAATCAGGTCATTTTAGAGAACAATCACCATCGCAACAACATCAGCACTCAGTTTCATTCAATTTTGATGAGAATTATTTATATCCTACTGTAAATACACTTCCACTTGGTGGTTCAATGCTGTCTATACCTCGCAATTATCGGCAGTCTGTCATACAAAGAATAATTCCACAATGTAAGTTTTCCATATTTGATTTGATGGCATTTTTAGATCCACACGAAAATCATTGAGTCTTTTTACGAGCCAGTTAATGGTATTT]
[-] EMBL CD157071 [GGATATGTTTACTCGACCATTACTAGGCGCACAATCTGTCGAAGATGCTCGCAAACTATTAGCCCTGAGTGTAGGTAGTAAACGTTCTTCCCAGAGACGTTTACCAGTGTTCACTTTCCCAAATCACTTTGATTACAATAATACTCATAATGTTGCTCAGTCTTTGTTCATTACGTCACCAGTTCGACCATATGCTGGTATTGGGTTTGGACATTTGAAATCGCAACATTACAACAATTCTAATGTATCATCGTCTATAGGATCATCTTATCAAGTAAATAATAATACTATCATGCAAATGTCAAATAACAGCACATCTAAACCATCATCTACCACTAATGCTACTATTTCCACATGTTCTAATCATTTGCACCATCATCATTATAGTCATGCTCAGATTATATATCCAC ]
[-] EMBL CD157116 [ TGTTTACTCGACCATTACTAGGCGCACAATCTGTCGAAGATGCTCGCAAACTATTAGCCCTGAGTGTAGGTAGTAAACGTTCTTCCCAGAGACGTTTACCAGTGTTCACTTTCCCAAATCACTTTGATTACAATAATACTCATAATGTTGCTCAGTCTTTGTTCATTACGTCACCAGTTCGACCATATGCTGGTATTGGGTTTGGACATTTGAAATCGCAACATTACAACAATTCTAATGTATCATCGTCTATAGGATCATCTTATCAAGTAAATAATAATACTATCATGCAAATGTCAAATAACAGCACATCTAAACCATCATCTACCACTAATGCTACTATTTCCACATGTTCTAATCATTTGCACCATCATCATTATAGTCATGCTCAGATTATATATCCAC ]
[+] EMBL CD094463 [ TAAACGTTCTTCCCAGAGACGTTTACCAGTGTTCACTTTCCCAAATCACTTTGATTACAATAATACTCATAATGTTGCTCAGTCTTTGTTCATTACGTCACCAGTTCGACCATATGCTGGTATTGGGTTTGGACATTTGAAATCGCAACATTACAACAATTCTAATGTATCATCGTCTATAGGATCATCTTATCAAGTAAATAATAATACTATCATGCAAATGTCAAATAACAGCACATCTAAACCATCATCTACCACTAATGCTACTATTTCCACATGTTCTAATCATTTGCACCATCATCATTATAGTCATGCTCAGATTATATATCCACAACCGACTCGATGTTATTCCACTCCTATCGGTACATCAGGCAGTAAAAGTCTACTGTTGCATAATCTTATCCCAATACCATCTCGTTTAGCTACTAATATGAAAGATAGTGGGAATAGCAATTCTACATCGAATCAAATGTATGCTATGCTACCAAATCAAAGAGATCCTTCTCATTTGCATCAGCAGCAGCATTCTTTAATCCATCACCAACAGACATCAGCATCTCCACCTGATAACCGAGGCCAATCTACTATGAAACATCAATATTTTAGTCAGGCAACANATCAGAGTACA ]
[+] EMBL CD120020 [ CTTCCCAGAGACGTTTACCAGTGTTCACTTTCCCAAATCACTTTGATTACAATAATACTCATAATGTTGCTCAGTCTTTGTTCATTACGTCACCAGTTCGACCATATGCTGGTATTGGGTTTGGACATTTGAAATCGCAACATTACAACAATTCTAATGTATCATCGTCTATAGGATCATCTTATCAAGTAAATAATAATACTATCATGCAAATGTCAAATAACAGCACATCTA ]
[-] EMBL CD157325 [ TTCCCAGAGACGTTTACCAGTGTTCACTTTCCCAAATCACTTTGATTACAATAATACTCATAATGTTGCTCAGTCTTTGTTCATTACGTCACCAGTTCGACCATATGCTGGTATTGGGTTTGGACATTTGAAATCGCAACATTACAACAATTCTAATGTATCATCGTCTATAGGATCATCTTATCAAGTAAATAATAATACTATCATGCAAATGTCAAATAACAGCACATCTAAACCATCATCTACCACTAATGCTACTATTTCCACATGTTCTAATCATTTGCACCATCATCA TATAGTCATGCTCAGATTATATATCCAC ]
[-] EMBL CD094656 [ AATTCTAATGTATCATCGTCTATAGGATCATCTTATCAAGTAAATAATAATACTATCATGCAAATGTCAAATAACAGCACATCTAAACCATCATCTACCACTAATGCTACTATTTCCACATGTTCTAATCATTTGCACCATCATCATTATAGTCATGCTCAGATTATATATCCGCAACCGACTCGATGTTATTCCACTCCTATCGGTACATCAGGCAGTAAAAGTCTACTGTTGCATAATCTTATCCCAATACCATCTCGTTTAGCTACTAATATGAAAGATAGTGGGAATAGCAATTCTACATCGAATCAAATGTATGCTATGCTACCAAATCAAAGAGATCCTTCTCATTTGCATCAGCAGCAGCATTCTTTAATCCATCACCAACAGACATCAGCATCTCCACCTGATAACCGAGGCCAATCTACTATGAAACATCAATATTTTAGTCAGGCAACAAATCAGAATACAAATCATCAATACCAACAAC ]
[-] EMBL CD064947 [ gTCATTTGCATCAGCAGCAGCATTCTTTAATCCATCCGCAACAGACATCAGCATCTCCACGTGATAGCCGAGGGCAATCTACTATGAAGCATCAATATNTTAGTCAGGCAACAAATCAGAATACAAATCATCAATACCAACAACAACCAAATCCACAGTCCCTGTCAAACTTCATAGGATCTCGTCTAACATTGAATCCTAATACTGCTGCAGTGCTACATCCATCTTGTCGTGGTATTTCCCTGCAGCAACAGATGACTTGTCCATATCGGTCTACTCATTTATCTGGTGAAGGTGCCTATCCCCCATATCAACAACAGGCAACGGTACAATCAGGTCATTTTAGAGAACAATCACCATCGCAACAACATCAGCACTCAGTTTCATTCAATTTTGATGAGAATTATTTATATCCTACTGTAAATACACTTCCACTTGGTGGTTCAATGCTGTCTATACCTCGCAATTATCGGCAGTCTGTCATACAAAGAATAATTCCACAATGTAAGTTTTCCATATTTGATTTGATGGCATTTTTAGATCCACACGAAAATCATTGAGTCTTTTTACGAGCCAGTTAATGGTATTT]
consensusID : consensus_9232#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 384 fasta sequence
[TGAATCCTAATACTGCTGCGAGTGCTACATCCATCTTGTCGTGGTATTTCCCTGCAGCAACAGATGACTTGTCCATATCGGTCTACTCATTTATCTGGTGAAGGTGCCTATCCCCCATATCAACAACAGGCAACGGTACAATCAGGTCATTTTAGAGAACAATCACCATCGCAACAACATCAGCACTCAGTTTCATTCAATTTTGATGAGAATTATTTATATCCTACTGTAAATACACTTCCACTTGGTGGTTCAATGCTGTCTATACCTCGCAATTATCGGCAGTCTGTCATACAAAGAATAATTCCACAATACTTAAATTGCAAGCCAACTCGGCCACCACCCTATGAAATAGCTTTGGCTTTAAAATATCCTCAAAACGTC]
[+] EMBL CD112831 [TGAATCCTAATACTGCTGCGAGTGCTACATCCATCTTGTCGTGGTATTTCCCTGCAGCAACAGATGACTTGTCCATATCGGTCTACTCATTTATCTGGTGAAGGTGCCTATCCCCCATATCAACAACAGGCAACGGTACAATCAGGTCATTTTAGAGAACAATCACCATCGCAACAACATCAGCACTCAGTTTCATTCAATTTTGATGAGAATTATTTATATCCTACTGTAAATACACTTCCACTTGGTGGTTCAATGCTGTCTATACCTCGCAATTATCGGCAGTCTGTCATACAAAGAATAATTCCACAATACTTAAATTGCAAGCCAACTCGGCCACCACCCTATGAAATAGCTTTGGCTTTAAAATATCCTCAAAACGTC]
consensusID : consensus_9232#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 379 fasta sequence
[CGTTTTGAGGATATTTTAAAGCCAAAGCTATTTCATAGGGTGGTGGCCGAGTTGGCTTGCAATTTAAGTCTATTGAATTGTGAAAGAGGGATGAGGGAATAAGAAAGATAACAAGAAAAAAAAGTAAAAAAATTTTCAGATTTCTCGTCTTGAGTTACAAATATTCTCCATCGTCTTAAATGTGTGAGGAATAAATAAAAGTAGGGAAGGTACGACTTGATATTTGAAAAATTAGTTACAGAGACAATTCGTAGAGAGGACAAATTACACAGCAACCACTATTGTAAGTTACTCATCAGTAAACGAGACTTCAGAGAAACTCATATAATCCGGTTTTGGTAACCGGGGGCTGGTACCGTTATAGCGGTTTTATACACAC]
[+] EMBL CD191684 [CGTTTTGAGGATATTTTAAAGCCAAAGCTATTTCATAGGGTGGTGGCCGAGTTGGCTTGCAATTTAAGTCTATTGAATTGTGAAAGAGGGATGAGGGAATAAGAAAGATAACAAGAAAAAAAAGTAAAAAAATTTTCAGATTTCTCGTCTTGAGTTACAAATATTCTCCATCGTCTTAAATGTGTGAGGAATAAATAAAAGTAGGGAAGGTACGACTTGATATTTGAAAAATTAGTTACAGAGACAATTCGTAGAGAGGACAAATTACACAGCAACCACTATTGTAAGTTACTCATCAGTAAACGAGACTTCAGAGAAACTCATATAATCCGGTTTTGGTAACCGGGGGCTGGTACCGTTATAGCGGTTTTATACACAC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9232#0 GGATATGTTTACTCGACCATTACTAGGCGCACAATCTGTCGAAGATGCTCGCAAACTATT 60
consensus_9232#1 ------------------------------------------------------------
consensus_9232#2 ------------------------------------------------------------
consensus_9232#0 AGCCCTGAGTGTAGGTAGTAAACGTTCTTCCCAGAGACGTTTACCAGTGTTCACTTTCCC 120
consensus_9232#1 ------------------------------------------------------------
consensus_9232#2 ------------------------------------------------------------
consensus_9232#0 AAATCACTTTGATTACAATAATACTCATAATGTTGCTCAGTCTTTGTTCATTACGTCACC 180
consensus_9232#1 ------------------------------------------------------------
consensus_9232#2 ------------------------------------------------------------
consensus_9232#0 AGTTCGACCATATGCTGGTATTGGGTTTGGACATTTGAAATCGCAACATTACAACAATTC 240
consensus_9232#1 ------------------------------------------------------------
consensus_9232#2 ------------------------------------------------------------
consensus_9232#0 TAATGTATCATCGTCTATAGGATCATCTTATCAAGTAAATAATAATACTATCATGCAAAT 300
consensus_9232#1 ------------------------------------------------------------
consensus_9232#2 ------------------------------------------------------------
consensus_9232#0 GTCAAATAACAGCACATCTAAACCATCATCTACCACTAATGCTACTATTTCCACATGTTC 360
consensus_9232#1 ------------------------------------------------------------
consensus_9232#2 ------------------------------------------------------------
consensus_9232#0 TAATCATTTGCACCATCATCATTATAGTCATGCTCAGATTATATATCCACAACCGACTCG 420
consensus_9232#1 ------------------------------------------------------------
consensus_9232#2 ------------------------------------------------------------
consensus_9232#0 ATGTTATTCCACTCCTATCGGTACATCAGGCAGTAAAAGTCTACTGTTGCATAATCTTAT 480
consensus_9232#1 ------------------------------------------------------------
consensus_9232#2 ------------------------------------------------------------
consensus_9232#0 CCCAATACCATCTCGTTTAGCTACTAATATGAAAGATAGTGGGAATAGCAATTCTACATC 540
consensus_9232#1 ------------------------------------------------------------
consensus_9232#2 ------------------------------------------------------------
consensus_9232#0 GAATCAAATGTATGCTATGCTACCAAATCAAAGAGATCCTTCTCATTTGCATCAGCAGCA 600
consensus_9232#1 ------------------------------------------------------------
consensus_9232#2 ------------------------------------------------------------
consensus_9232#0 GCATTCTTTAATCCATCACCAACAGACATCAGCATCTCCACCTGATAACCGAGGCCAATC 660
consensus_9232#1 ------------------------------------------------------------
consensus_9232#2 ------------------------------------------------------------
consensus_9232#0 TACTATGAAACATCAATATTTTAGTCAGGCAACAAATCAGAATACAAATCATCAATACCA 720
consensus_9232#1 ------------------------------------------------------------
consensus_9232#2 ------------------------------------------------------------
consensus_9232#0 ACAACAACCAAATCCACAGTCCCTGTCAAACTTCATAGGATCTCGTCTAACATTGAATCC 780
consensus_9232#1 -----------------------------------------------------TGAATCC 7
consensus_9232#2 -------------------------------------------------------CGTTT 5
*
consensus_9232#0 TAATACTGCTGC-AGTGCTACATCCATCTTGTCGTGGTATTTCCCTGCAGCAACAGATGA 839
consensus_9232#1 TAATACTGCTGCGAGTGCTACATCCATCTTGTCGTGGTATTTCCCTGCAGCAACAGATGA 67
consensus_9232#2 TGAGGATATTTT-AAAGCCAAAGCTATTTCATAG-GGTGGTGGCCG--------AGTTGG 55
* * * * * ** * * * ** * * * *** * ** ** **
consensus_9232#0 CTTGTCCATATCGGTCTACTCATTTATCTGGTGAAGGTGCCTATCCCCCATATCAACAAC 899
consensus_9232#1 CTTGTCCATATCGGTCTACTCATTTATCTGGTGAAGGTGCCTATCCCCCATATCAACAAC 127
consensus_9232#2 CTTG-CAATTTAAGTCTATTGAATTGTGAAAGAGGGATGAGGG-----AATAAGAAAGAT 109
**** * ** * ***** * * ** * * ** *** ** *
consensus_9232#0 AGGCAACGGTACAATCAGGTCATTTTAGAGAACAATCACCATCGCAACAACATCAGCACT 959
consensus_9232#1 AGGCAACGGTACAATCAGGTCATTTTAGAGAACAATCACCATCGCAACAACATCAGCACT 187
consensus_9232#2 AACAAGAAAAAAAAGTAAAAAAATTTTCAGATTTCTCGTCTT--GAGTTACA--AATATT 165
* * * ** * * *** *** ** * * * *** * * *
consensus_9232#0 CAGTTTCATTCAATTTTGATGAGAATTATTTATATCCTACTGTAAATACACTTC--CACT 1017
consensus_9232#1 CAGTTTCATTCAATTTTGATGAGAATTATTTATATCCTACTGTAAATACACTTC--CACT 245
consensus_9232#2 CTCCATCGTCTTAAATGTGTGAGGAATAAATAAAAG-TAGGGAAGGTACGACTTGATATT 224
* ** * * * **** * ** ** * ** * * *** * * *
consensus_9232#0 TGGTGGTTCAATGCTGTCTATACCTCGCAATTATCGGCAGTCTGTCATACAAAGAATAAT 1077
consensus_9232#1 TGGTGGTTCAATGCTGTCTATACCTCGCAATTATCGGCAGTCTGTCATACAAAGAATAAT 305
consensus_9232#2 TGAAAAATTAGTTACAGAGACAATTCGTAGAGAG-GACAAATTA-CACAGCAACCACTAT 282
** * * * * * *** * * * ** * ** * ** * **
consensus_9232#0 TCCACAATGTAAGTTTTCCATATTTGATTTGATGGCATTTTTAGATCCACACGAAAATCA 1137
consensus_9232#1 TCCACAATACTTAAATTGCAAGCCAACTCGGCCACCACCCTATGAAATA-GCTTTGGCTT 364
consensus_9232#2 TGTAAGTTACTCATCAGTAAACGAGACTTCAGAGAAACTCATATAATCCGGTTTTGGTAA 342
* * * * * * *
consensus_9232#0 TTGAG---TCTTTTTACGA-GCCAGTTAATGGTATTT 1170
consensus_9232#1 TAAAA---TATCCTCAAAACGTC-------------- 384
consensus_9232#2 CCGGGGGCTGGTACCGTTATAGCGGTTTTATACACAC 379
* * *
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||