These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9248#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1794 fasta sequence [TTCACAAACAACTGACACGTTAAGGTTGGACACACTTTCCACTGAACAATCGGATGCAATACATAGTGGATTTGATTTATCTGCAGACAATTCAGATCAAGATTTGGATTCGGTAGCTGCACAGCTTGTGTCTGATGTGTTGGAAAATGCCAAAAACTATTTCTCAAATCATATCACAAAATCTAATGATGCAGAACAAAAAACAGTGAATGTTATTCGCGATAGCGGATGTGCACCATCTGCCACAGATGAAGATGAAGATTATTATTATGAAGAAGAAATTGATGATGATGTTGATGATGATCACGTGAATAACGATGAAACAGTCGAAGAAATATCAGAAAATCATATTGATATCTTAACATCATCTGGAACTATTTCCACTTCAGACACTTCAACTCCTAAATTTGTAGGTGTTGCTTCTATTTTCGATGATGCTTCATTGGATCAAAGCAATCAGTTGGATAAGACATCGTCTATACACGATGATTTACTCATTGATAATGATGTTATTGATGTTGTAGCACCGTGTCCTGCTATTTTTATGTCTGGAATTACCACTTCTATTGATCCTCCTACTATTATTACAACAACAACAAATATTATTACTAACAATAATACTACAATAACAACAAATATCGGTCGTAATGACTCTCAGAAGTCAACCACTTCAAGTGGATATGTCGACTCTAGTGATGATTAAGATTAGTAGGTAATATTCTTCGAATGCTTTCTCAAACACGAACTTTTTCAAAAAAAAAAAGAAATTAATATCTAGTTTATCAATAATGAGTTGATTACCTTTCAGACATCTGATTAACCTCGTCATAAAAAAAATCATTTTTGTTGTATGATAATGATAATCAGAATAGGAAGACGGATATGTTTTCTATCTAGATTATATTTTTGTGTGTATGTATGTATGTGTGCTGTATGACTTTTTTTGAATAACATGCATTTCATTTGTGACGCCGTTTATTTTCAAAACTTATTATGTCTTTAACCCATCCTCTCTCTATATATACATATATCACCTACAATTGTTTGAAATAGACATTGTTCCTGGCGTTTTTTTCACCATGTTTTACACGTACATACACAAACGCTTTCGCATCAGGTATGCTCGNGTATCTTTTTTG-TTGGATATGTATGCGTGTACTTATTTTATCATATTTAATTTAGTTTATTACTCCTTTTCAAAGAACATTCTACTTTTTTTTGTTTCAATTATTTAAACATTATGTGCCTTCCATTTTTTGAATAGTTCGATTTCTTCCAAATATTTGTATTTAGAACAAGATAGACATGATTGTATTATACCCGCGAAAAAAAAAGGTTTTTGTATGTGTACGTGATAATTAGCAACTTGTTTCTGTTTTGCAAAAATTCATACATACACCTAAAAAGAAACATTCATTGTTTATACTGTTTACGTATTTTCTTTTTGTTTGAATAAAATATGTATCAATGTACACACGTGGATCGTGTGCTTTTTATAAATTTGTGTGTAAATACACTAATCCTGTTTTCAATAGTGACACTATACTACTAATAATAGTACTACTACTACTACTACCACTACTATACTCATTAATACAGAACATCTTCATTTTATTCTAAACTTATTTTCATTACAAGTATTTAACTCTCATCATTTGACATTGTTAGTTATAATTTTATTTCCTATTAAAGAATAAATTACACTCACATATTTACCTAATTACACANATTTATTGAATAAATAAATAAATAACCAGTGGTAAAAGAAGAGACACATCAATATACTGTTTCCTT] [+] EMBL CD063380 [TTCACAAACAACTGACACGTTAAGGTTGGACACACTTTCCACTGAACAATCGGATGCAATACATAGTGGATTTGATTTATCTGCAGACAATTCAGATCAAGATTTGGATTCGGTAGCTGCACAGCTTGTGTCTGATGTGTTGGAAAATGCCAAAAACTATTTCTCAAATCATATCACAAAATCTAATGATGCAGAACAAAAAACAGTGAATGTTATTCGCGATAGCGGATGTGCACCATCTGCCACAGATGAAGATGAAGATTATTATTATGAAGAAGAAATTGATGATGATGTTGATGATGATCACGTGAATAAC ] [+] EMBL CD155677 [ GGATTTGATTTATCTGCAGACAATTCAGATCAAGATTTGGATTCGGTAGCTGCACAGCTTGTGTCTGATGTGTTGGAAAATGCCAAAAACTATTTCTCAAATCATATCACAAAATCTAATGATGCAGAACAAAAAACAGTGAATGTTATTCGCGATAGCGGATGTGCACCATCTGCCACAGATGAAGATGAAGATTATTATTATGAAGAAGAAATTGATGATGATGTTGATGATGATCACGTGAATAACGATGAAACAGTCGAAGAAATATCAGAAAATCATATTGATATCTTAACATCATCTGGAACTATTTCCACTTCAGACACTTCAACTCCTAAATTTGTAGGTGTTGCTTCTATTTTCGATGATGCTTCATTGGATCAAAGCAATCAGTTGGATAAGACATCGTCTATACACGATGATTTACTCATTGATAATGATGTTATTGATGTTGTAGCACCGTGTCCTGCTATTTTTATGTCTGGAATTACCACT ] [+] EMBL CD117422 [ TCAGTTGGATAAGACATCGTCTATACACGATGATTTACTCATTGATAATGATGTTATTGATGTTGTAGCACCGTGTCCTGCTATTTTTATGTCTGGAATTACCACTTCTATTGATCCTCCTACTATTATTACAACAACAACAAATATTATTACTAACAATAATACTACAATAACAACAAATATCGGTCGTAATGACTCTCAGAAGTCAACCACTTCAAGTGGATATGTCGACTCTAGTGATGATTAAGATTAGTAGGTAATATTCTTCGAATGCTTTCTCAAACACGAACTTTTTCAAAAAAAAAAAGAAATTAATATCTAGTTTATCAATAATGAGTTGATTACCTTTCAGACATCTGATTAACCTCGTCATAAAAAAAATCATTTTTGTTGTATGATAATGATAATCAGAATAGGAAGACGGATATGTTTTCTATCTAGATTATATTTTTGTGTGTATGTATGTATGTGTGCTGTATGACTTTTTTTGAATAACATGCATTTCATTTGTGACGCCGCTTATTTTCAAAACTTAT ] [+] EMBL CD078818 [ AGTTTATCAATAATGAGTTGATTACCTTTCAGACATCTGATTAACCTCGTCATAAAAAAAATCATTTTTGTTGTATGATAATGATAATCAGAATAGGAAGACGGATATGTTTTCTATCTAGATTATATTTTTGTGTGTATGTATGTATGTGTGCTGTATGACTTTTTTTGAATAACATGCATTTCATTTGTGACGCCGTTTATTTTCAAAACTTATTATGTCTTTAACCCATCCTCTCTCTATATATACATATATCACCTACAATTGTTTGAAATAGACATTGTTCCTGGCGTTTTTTTCACCATGTTTTACACGTACATACACAAACGCTTTCGCATCAGGTATGCTCGNGTATCTTTTTTG TTGGATAT ] [-] EMBL CD073278 [ GTTTATCAATAATGAGTTGATTACCTTTCAGACATCTGATTAACCTCGTCATAAAAAAAATCATTTTTGTTGTATGATAATGATAATCAGAATAGGAAGACGGATATGTTTTCTATCTAGATTATATTTTTGTGTGTATGTATGTATGTGTGCTGTATGACTTTTTTTGAATAACATGCATTTCATTTGTGACGCCGTTTATTTTCAAAACTTATTATGTCTTTAACCCATCCTCTCTCTATATATACATATATCACCTACAATTGTTTGAAATAGACATTGTTCCTGGCGTTTTTTTCACCATGTTTTACACGTACATACACAAACGCTTTCGCATCAGGTATGCTCGTGTATCTTTTTTGTTTGTATATGTATGCGTGTACTTATTTTATCATATTTAATTTAGTTTATTACTCCTTTTCAAAGAACATTCTACTTTTTTTTGTTTCAATTATTTAAACATTATGTGCCTTCCATTTTTTGAATAGTTCGATTTCTTCCAAATATTTGTATTTAGAACAAGATAGACATGATTGTATT ] [+] EMBL CD133796 [ AAACATTATGTGCCTTCCATTTTTTGAATAGTTCGATTTCTTCCAAATATTTGTATTTAGAACAAGATAGACATGATTGTATTATACCCGCGAAAAAAAAAGGTTTTTGTATGTGTACGTGATAATTAGCAACTTGTTTCTGTTTTGCAAAAATTCATACATACACCTAAAAAGAAACATTCATTGTTTATACTGTTTACGTATTTTCTTTTTGTTTGAATAAAATATGTATCAATGTACACACGTGGATCGTGTGCTTTTTATAAATTTGTGTGTAAATACACTAATCCTGTTTTCAATAGTGACACTATACTACTAATAATAGTACTACTACTACTACTACCACTACTATACTCATTAATACAGAACATCTTCATTTTATTCTAAACTTATTTTCATTACAAGTATTTAACTCTCATCATTTGACATTGTTAGTTATAATTTTATTTCCTATTAAAGAATAAATTACACTCACATATTTACCTAATTACACANATTTATTGAATAAATAAATAAATAACCAGTGGTAAAAGAAGAGACACATCAATATACTGTTTCCTT] consensusID : consensus_9248#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 382 fasta sequence [CGGCACGAGGACTATTTCCACTTCAGACACTTCAACTCCTAAATTTGTAGGTGTTGCTTCTATTTTCGATGATGCTTCATTGGATCAAAGCAATCAGTTGGATAAGACATCGTCTATACACGATGATTTACTCATTGATAATGATGTTATTGATGTTGTAGCACCGTGTCCTGCTATTTTTATGTCTGGAATTACCACTTCTATTGATCCTCCTACTATTATTACAACAACAACAACAAATATTATTACTAACAATAATACTACAATAACAACAAATATCGGTCGTAATGACTCTCAGAAGTCAACCACTTCAAGTGGATATGTCGACTCTAGTGATGATTAAGATTAGTAGGTAATATTCTTCGAATGC-TTCTCAAACACG] [+] EMBL CD079344 [CGGCACGAGGACTATTTCCACTTCAGACACTTCAACTCCTAAATTTGTAGGTGTTGCTTCTATTTTCGATGATGCTTCATTGGATCAAAGCAATCAGTTGGATAAGACATCGTCTATACACGATGATTTACTCATTGATAATGATGTTATTGATGTTGTAGCACCGTGTCCTGCTATTTTTATGTCTGGAATTACCACTTCTATTGATCCTCCTACTATTATTACAACAACAACAACAAATATTATTACTAACAATAATACTACAATAACAACAAATATCGGTCGTAATGACTCTCAGAAGTCAACCACTTCAAGTGGATATGTCGACTCTAGTGATGATTAAGATTAGTAGGTAATATTCTTCGAATGC TTCTCAAACAC ] [-] EMBL CD073621 [ GGCACGAGGACTATTTCCACTTCAGACACTTCAACTCCTAAATTTGTAGGTGTTGCTTCTATTTTCGATGATGCTTCATTGGATCAAAGCAATCAGTTGGATAAGACATCGTCTATACACGATGATTTACTCATTGATAATGATGTTATTGATGTTGTAGCACCGTGTCCTGCTATTTTTATGTCTGGAATTACCACTTCTATTGATCCTCCTACTATTATTACAACAACAACAACAAATATTATTACTAACAATAATACTACAATAACAACAAATATCGGTCGTAATGACTCTCAGAAGTCAACCACTTCAAGTGGATATGTCGACTCTAGTGATGATTAAGATTAGTAGGTAATATTCTTCGAATGC TTCTCAAACACG] [+] EMBL CD078817 [ TTTTTATGTCTGGAATTACCACTTCTATTGATCCTCCTACTATTATTACAACAACAACAACAAATATTATTACTAACAATAATACTACAATAACAACAAATATCGGTCGTAATGACTCTCAGAAGTCAACCACTTCAAGTGGATATGTCGACTCTAGTGATGATTAAGATTAGTAGGTAATATTCTTCGAATGCTTTCTCAAACAC ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9248#0 TTCACAAACAACTGACACGTTAAGGTTGGACACACTTTCCACTGAACAATCGGATGCAAT 60 consensus_9248#1 ------------------------------------------------------------ consensus_9248#0 ACATAGTGGATTTGATTTATCTGCAGACAATTCAGATCAAGATTTGGATTCGGTAGCTGC 120 consensus_9248#1 ------------------------------------------------------------ consensus_9248#0 ACAGCTTGTGTCTGATGTGTTGGAAAATGCCAAAAACTATTTCTCAAATCATATCACAAA 180 consensus_9248#1 ------------------------------------------------------------ consensus_9248#0 ATCTAATGATGCAGAACAAAAAACAGTGAATGTTATTCGCGATAGCGGATGTGCACCATC 240 consensus_9248#1 ------------------------------------------------------------ consensus_9248#0 TGCCACAGATGAAGATGAAGATTATTATTATGAAGAAGAAATTGATGATGATGTTGATGA 300 consensus_9248#1 ------------------------------------------------------------ consensus_9248#0 TGATCACGTGAATAACGATGAAACAGTCGAAGAAATATCAGAAAATCATATTGATATCTT 360 consensus_9248#1 ------------------------------------------------------------ consensus_9248#0 AACATCATCTGGAACTATTTCCACTTCAGACACTTCAACTCCTAAATTTGTAGGTGTTGC 420 consensus_9248#1 --CGGCA-CGAGGACTATTTCCACTTCAGACACTTCAACTCCTAAATTTGTAGGTGTTGC 57 * ** * * *********************************************** consensus_9248#0 TTCTATTTTCGATGATGCTTCATTGGATCAAAGCAATCAGTTGGATAAGACATCGTCTAT 480 consensus_9248#1 TTCTATTTTCGATGATGCTTCATTGGATCAAAGCAATCAGTTGGATAAGACATCGTCTAT 117 ************************************************************ consensus_9248#0 ACACGATGATTTACTCATTGATAATGATGTTATTGATGTTGTAGCACCGTGTCCTGCTAT 540 consensus_9248#1 ACACGATGATTTACTCATTGATAATGATGTTATTGATGTTGTAGCACCGTGTCCTGCTAT 177 ************************************************************ consensus_9248#0 TTTTATGTCTGGAATTACCACTTCTATTGATCCTCCTACTATTATTACAACAACAACAA- 599 consensus_9248#1 TTTTATGTCTGGAATTACCACTTCTATTGATCCTCCTACTATTATTACAACAACAACAAC 237 *********************************************************** consensus_9248#0 --ATATTATTACTAACAATAATACTACAATAACAACAAATATCGGTCGTAATGACTCTCA 657 consensus_9248#1 AAATATTATTACTAACAATAATACTACAATAACAACAAATATCGGTCGTAATGACTCTCA 297 ********************************************************** consensus_9248#0 GAAGTCAACCACTTCAAGTGGATATGTCGACTCTAGTGATGATTAAGATTAGTAGGTAAT 717 consensus_9248#1 GAAGTCAACCACTTCAAGTGGATATGTCGACTCTAGTGATGATTAAGATTAGTAGGTAAT 357 ************************************************************ consensus_9248#0 ATTCTTCGAATGCTTTCTCAAACACGAACTTTTTCAAAAAAAAAAAGAAATTAATATCTA 777 consensus_9248#1 ATTCTTCGAATGCTT-CTCAAACACG---------------------------------- 382 *************** ********** consensus_9248#0 GTTTATCAATAATGAGTTGATTACCTTTCAGACATCTGATTAACCTCGTCATAAAAAAAA 837 consensus_9248#1 ------------------------------------------------------------ consensus_9248#0 TCATTTTTGTTGTATGATAATGATAATCAGAATAGGAAGACGGATATGTTTTCTATCTAG 897 consensus_9248#1 ------------------------------------------------------------ consensus_9248#0 ATTATATTTTTGTGTGTATGTATGTATGTGTGCTGTATGACTTTTTTTGAATAACATGCA 957 consensus_9248#1 ------------------------------------------------------------ consensus_9248#0 TTTCATTTGTGACGCCGTTTATTTTCAAAACTTATTATGTCTTTAACCCATCCTCTCTCT 1017 consensus_9248#1 ------------------------------------------------------------ consensus_9248#0 ATATATACATATATCACCTACAATTGTTTGAAATAGACATTGTTCCTGGCGTTTTTTTCA 1077 consensus_9248#1 ------------------------------------------------------------ consensus_9248#0 CCATGTTTTACACGTACATACACAAACGCTTTCGCATCAGGTATGCTCGNGTATCTTTTT 1137 consensus_9248#1 ------------------------------------------------------------ consensus_9248#0 TGTTGGATATGTATGCGTGTACTTATTTTATCATATTTAATTTAGTTTATTACTCCTTTT 1197 consensus_9248#1 ------------------------------------------------------------ consensus_9248#0 CAAAGAACATTCTACTTTTTTTTGTTTCAATTATTTAAACATTATGTGCCTTCCATTTTT 1257 consensus_9248#1 ------------------------------------------------------------ consensus_9248#0 TGAATAGTTCGATTTCTTCCAAATATTTGTATTTAGAACAAGATAGACATGATTGTATTA 1317 consensus_9248#1 ------------------------------------------------------------ consensus_9248#0 TACCCGCGAAAAAAAAAGGTTTTTGTATGTGTACGTGATAATTAGCAACTTGTTTCTGTT 1377 consensus_9248#1 ------------------------------------------------------------ consensus_9248#0 TTGCAAAAATTCATACATACACCTAAAAAGAAACATTCATTGTTTATACTGTTTACGTAT 1437 consensus_9248#1 ------------------------------------------------------------ consensus_9248#0 TTTCTTTTTGTTTGAATAAAATATGTATCAATGTACACACGTGGATCGTGTGCTTTTTAT 1497 consensus_9248#1 ------------------------------------------------------------ consensus_9248#0 AAATTTGTGTGTAAATACACTAATCCTGTTTTCAATAGTGACACTATACTACTAATAATA 1557 consensus_9248#1 ------------------------------------------------------------ consensus_9248#0 GTACTACTACTACTACTACCACTACTATACTCATTAATACAGAACATCTTCATTTTATTC 1617 consensus_9248#1 ------------------------------------------------------------ consensus_9248#0 TAAACTTATTTTCATTACAAGTATTTAACTCTCATCATTTGACATTGTTAGTTATAATTT 1677 consensus_9248#1 ------------------------------------------------------------ consensus_9248#0 TATTTCCTATTAAAGAATAAATTACACTCACATATTTACCTAATTACACANATTTATTGA 1737 consensus_9248#1 ------------------------------------------------------------ consensus_9248#0 ATAAATAAATAAATAACCAGTGGTAAAAGAAGAGACACATCAATATACTGTTTCCTT 1794 consensus_9248#1 --------------------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||