These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9251#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1136 fasta sequence [CCTCGAGGCCAAAAATTCGGCACGAGGTGGACATCAACTCTACCATTATTATCATCGTCGTCGTCATCACCAAACGTAAAACAATCTTATTTGCTTTCCTCGTCAATATCACCTTCATTACGCAAACAAATGTTGGATGGTGAAGATCTTAATTGTCACACATTGGGTTTATCAAAACAACAATTTACAAACTCTGACGATACATCTTTATTTAATAACATTCAATCAATTGGTTTAATGAATAAAGTAGCACCAGAAAGTCCATTAGTTATTATGCAATTGATGGCTAAAGGCGATCTAGCTAGTTATCTACGTTATTTAGGTGACAAAGGACAAGGTTCCGTTAATTCATCACAAGCGTATCATGTAATCAAGATCCCGCACATGCACTTGCGTCTGCTTTGAGTACCTTATTCTGTGGTACTGATGAAGATTCTAGTTATGATTACAGTGATCGAAATATTGACCCTCCTGATGATTTTTCTGCACCGTCAATGCAGTTTGGTGCCATTAGTCGAACAGCGACAGTTAATGAAAGTTCTATCGGTAGTGGTCACTTTAGTGAGACTCGTTTGGTGAATTGTAGTTCTGAAGATGTATCTTTGAAACAAAATGATAACGGCATTGCTCTGTCAGAGGTTCAATGTTTGTTAAGATTATGTGAACCGGACTCAAATCTTGCCGTTCCAGCTTTCGTGGATTCTGAATCGTTTCCTTTGATATCCAATCTTATAATGAAGTTTGATACTGATGAATGTACGAACTTTGAACTAAGTAGAACTAGAAACGTTATCGCATAAACTAAAAAAATATTTTTTAAAAATTGTCATTCCTTGTGATAGCTTTGTATGATCTCATATTTCTACATTATTTTGCAAATTGTTTTCACCTTCTTTTTTGATAATAAATAACTTTACTATGAAATTGTATAGTTGCCCAGACGCTTCAATTTTGCTACTGTTTATTCAGGTTGTTTTTCGAGATATTTGCCAAAAGTTAAAAATAACTGTCAAGTTCTTTTTAAACAAGATAACAGTTGATGATCAATACTGTTACTCTGCTTTTCACTTTAGATCATTAAATTTAGCCGGTTTATGTATTTCGCGTGAAATTTTTAGTAAAAAAATTAAAAAGTT] [+] EMBL CD080571 [CCTCGAGGCCAAAAATTCGGCACGAGGTGGACATCAACTCTACCATTATTATCATCGTCGTCGTCATCACCAAACGTAAAACAATCTTATTTGCTTTCCTCGTCAATATCACCTTCATTACGCAAACAAATGTTGGATGGTGAAGATCTTAATTGTCACACATTGGGTTTATCAAAACAACAATTTACAAACTCTGACGATACATCTTTATTTAATAACATTCAATCAATTGGTTTAATGAATAAAGTAGCACCAGAAAGTCCATTAGTTATTATGCAATTGATGGCTAAAGGCGATCTAGCTAGTTATCTACGTTATTTAGGTGACAAAGGACAAGGTTCCGTTAATTCATCACAAGCGTATCATGTAATCAAGATCCCGCACATGCACTTGCGTCTGCTTTGAGTACCTTATTCTGTGGTACTGATGAAGATTCTAGTTATGATTACAGTGATCGAAATATTGACCCTCCTGATGATTTTTCTGCACCGTCAATGCAGTTTGGTGCCATTAGTCGAACAGCGACAGTTAATGAAAGTTCTATCGGTAGTGGTCACTTTAGTGAGACTCGTTTGGTGAATTGTAGTTCTGAAGATGTATCTTTGAAACAAAATGATAACGGCATTGCTCTGTCAGAGGTTCAATGTTTGTTAAGATTATGTGAACCGGACTCAAATCT ] [+] EMBL CD080682 [ AGGCC AGNATTCGGCACGAGGTCGACATCAACTCTACCATTATTATCATCGTCGTCGTCATCACCAAACGTAAAACAATCTTATTTGCTTTCCTCGTCAATATCACCTTCATTACGCAAACAAATGTTGGATGGTGAAGATCTTAATTGTCACACATTGGGTTTATCAAAACAACAATTTACAAACTCTGACGATACATCTTTATTTAATAACATTCAATCAATTGGTTTAATGAATAAAGTAGCACCAGAAAGTCCATTAGTTATTATGCAATTGATGGCTAAAGGCGATCTAGCTAGTTATCTACGTTATTTAGGTGACAAAGGACAAGGTTCCGTTAATTCATCACAAGCGTATCATGTAATCAAGATCCCGCACATGCACTTGCGTCTGCTTTGAGTACCTTATTCTGTGGTACTGATGAAGATTCTAGTTATGATTACAGTGATCGAAATATTGACCCTCCTGATGATTTTTCTGCACCGTCAATGCAGTTTGGTGCCATTAGTCGAACAGCGACAGTTAATGAAAGTTCTATCGGTAGTGGTCACTTTAGTGAGACTCGTTTGGTGAATTGTAGTTCTGAAGATGTATCTTTGAAACAAAATGATAACGGCATTGCTCTGTCAGAGGTTCAATGTTTGTTAAGATTATGTGAACCGGACTCAAATCTTGCCGTTCCAGCTTTCGTGGATTCTGAATCGTTTCCTTT ] [-] EMBL CD074606 [ ACCCTCCTGATG TTTTTCTGCACCGTCAATGCAGTTTGGTGCCATTAGTCGAACAGCGACAGTTAATGAAAGTTCTATCGGTAGTGGTCACTTTAGTGAGACTCGTTTGGTGAATTGTAGTTCTGAAGATGTATCTTTGAAACAAAATGATAACGGCATTGCTCTGTCAGAGGTTCAATGTTTGTTAAGATTATGTGAACCGGACTCAAATCTTGCCGTTCCAGCTTTCGTGGATTCTGAATCGTTTCCTTTGATATCCAATCTTATAATGAAGTTTGATACTGATGAATGTACGAACTTTGAACTAAGTAGAACTAGAAACGTTATCGCATAAACTAAAAAAATATTTTTTAAAAATTGTCATTCCTTGTGATAGCTTTGTATGATCTCATATTTCTACATTATTTTGCAAATTGTTTTCACCTTCTTTTTTGATAATAAATAACTTTACTATGAAATTGTATAGTTGCCCAGACGCTTCAATTTTGCTACTGTTTATTCAGGTTGTTTTTCGAGATATTTGCCAAAAGTTAAAAATAACTGTCAAGTTCTTTTTAAACAAGATAACAGTTGATGATCAATACTGTTACTCTGCTTTTCACTTTAGATCATTAAATTTAGCCGGTTTATGTATTTCGCGTGAAATTTTTAGTAAAAAAATTAAAAAGTT] [-] EMBL CD077029 [ GTTTGGTGCCATTAGTCGAACAGCGACAGTTAATGAAAGTTCTATCGGTAGTGGTCACTTTAGTGAGACTCGTTTGGTGAATTGTAGTTCTGAAGATGTATCTTTGAAACAAAATGATAACGGCATTGCTCTGTCAGAGGTTCAATGTTTGTTAAGATTATGTGAACCGGACTCAAATCTTGCCGTTCCAGCTTTCGTGGATTCTGAATCGTTTCCTTTGATATCCAATCATATAATGAAGTTTGATACTGATGAATGTACGAACTTTGAACTAAGTAGAACTAGAAACGTTATCGCATAAACTAAAAAAATATTTTTTAAAAATTGTCATTCCTTGTGATAGCTTTGTATGATCTCATATTTCTACATTATTTTGCAAATTGTTTTCACCTTCTTTTTTGATAATAAATAACTTTACTATGAAATTGTATAGTTGCCCAGACGCTTCAATTTTGCTACTGTTTATTCAGGTTGTTTTTCGAGATATTTGCCAAAAGTTAAAAATAACTGTCAAGTTCTTTTTAAACAAGATAACAGTTGATGATCAATACTGTTACTCTGCTTTTCACTTTAGATCATTAAATTTAGCCGGTTTATGTATTTCACGTGAAATTTTTAGTACTAAAATTAAAAAGTT] consensusID : consensus_9251#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1027 fasta sequence [TAGCTGATGGTATGGCATACTTATCTGCTAAACAGTATGTTCATAGAGATTTAGCCGCTCGTAATTGTCTTGTTGATTCCAGTCTTACGGTTAAAATTGGGGATTTTGGACTGTGTAGAGATGTTTATGGACATAATTATTATCACAAAACAAGTCATGCTAAACTTCCAATTCGTTGGATGGCCCCAGAATCTCTTCAAACTGCTTACTTTACAACACAATCAGATGTTTGGTCTTATGGTGTTGTTTTGTGGGAGATAGTTACTATGGCATGTCTTCCTTATCGTGGTATGTCTCATGAAGAAGTGGTCAAGTACGTTCTCAGTGGAAAAACACTTCTATCCAATGGTTCACCTACCAACTGTCCAGAACTCTTTCGTGCATTAATGCTTCATTGTTGGAACTTCAATCCCTTGAAGCGACCAACATT-CCTAGGACTATGCGCTCTACTTTCACCATGC-TTGGAGATGCGAAATTTCGACTGGCTAGTTTTTTTTATCATGGTGAACAAAGTTTTGTAAATAGAGATAATCGTTCAAAGGTTTTGGAAGCCCCTGCTGTTTCATTAGGTAAATTGAACATATCATGTAATCAAGATCCCGCACATGCACTTGCGTCTGCTTTGAGTACCTTATTCTGTGGTACTGATGAAGATTCTAGTTATGATTACAGTGATCGAAATATTGACCCTCCTGATGATTTTTCTGCACCGTCAATGCAGTTTGGTGCCATTAGTCGAACAGCGACAGTTAATGAAAGTTCTATCGGTAGTGGTCACTTTAGTGAGACTCGTTTGGTGAATTGTAGTTCTGAAGATGTATCTTTGAAACAAAATGATAACGGCATTGCTCTGTCAGAGGTTCAATGTTTGTTAAGATTATGTGAACCGGACTCAAATCTTGCCGTTCCAGCTTTCGTGGATTCTGAATCGTTTCCTTTGATATCCAATCATATTAATGAAGTTTGATACTGATGAATGTACGAACTTTGAACTAAGTAGAACTAGAAACGTTATCGCATAAACTAA] [-] EMBL CD163676 [TAGCTGATGGTATGGCATACTTATCTGCTAAACAGTATGTTCATAGAGATTTAGCCGCTCGTAATTGTCTTGTTGATTCCAGTCTTACGGTTAAAATTGGGGATTTTGGACTGTGTAGAGATGTTTATGGACATAATTATTATCACAAAACAAGTCATGCTAAACTTCCAATTCGTTGGATGGCCCCAGAATCTCTTCAAACTGCTTACTTTACAACACAATCAGATGTTTGGTCTTATGGTGTTGTTTTGTGGGAGATAGTTACTATGGCATGTCTTCCTTATCGTGGTATGTCTCATGAAGAAGTGGTCAAGTACGTTCTCAGTGGAAAAACACTTCTATCCAATGGTTCACCTACCAACTGTCCAGAACTCTTTCGTGCATTAATGCTTCATTGTTGGAACTTCAATCCCTTGAAGCGACCAACATT CCTAGGACTATGCGCTCTAC ] [-] EMBL CD147566 [ TTATCACAAAACAAGTCATGCTAAACTTCCAATTCGTGGGATGGCCCCAGAATCTCTTCAAACGGCTTACTTTACAACACAATCAGATGTTGGGTCTAAGGGTGTTGTTTTGTGGGAGATAGTTACTATGGCATGTCTTCCTTATCGTGGTATGTCTCATGAAGAAGTGGTCAAGTACGTTCTCAGTGGAAAAACACTTCTATCCAATGGTTCACCTACCAACTGTCCAGAACTCTTTCGTGCATTAATGCTTCATTGTTGGAACTTCAATCCCTTGAAGCGACCAACATTCCCTAGGACTATGCGCTCTACTTTCACCATGC TTGGAGATGCGA ] [+] EMBL CD168125 [ GTTTGGTCTTATGGTGTTGTTTTGTGGGAGATAGTTACTATGGCATGTCTTCCTTATCGTGGTATGTCTCATGAAGAAGTGGTCAAGTACGTTCTCAGTGGAAAAACACTTCTATCCAATGGTTCACCTACCAACTGTCCAGAACTCTTTCGTGCATTAATGCTTCATTGTTGGAGCTTCAATCCCCTGAAGCGACCAACATT CCTAGGACTATGCGCTCTACTTTCACCATGCTTTGGAGATGCGAAATTTCGACTGGCTAGTTTTTTTTATCATGGTGAACAAAGTTTTGTAAATAGAGATAATCGTTCAAAGGTTTTGGAAGCCCCTGCTGTTTCATTAGGTAAATTGAACATATCATGTAATCAAGATCCCGCACATGCACTTGCGTCTGCTTTGAGTACCTTATTCTGTGGTACTGATGAAGATTCTAGTTATGATTACAGTGATCGAA ] [+] EMBL CD080805 [ CAAAGTTTTGTAAATAGAGATAATCGTTCAAAGGTTTTGGAAGCCCCTGCTGTTTCATTAGGTAAATTGAACATATCATGTAATCAAGATCCCGCACATGCACTTGCGTCTGCTTTGAGTACCTTATTCTGTGGTACTGATGAAGATTCTAGTTATGATTACAGTGATCGAAATATTGACCCTCCTGATGATTTTTCTGCACCGTCAATGCAGTTTGGTGCCATTAGTCGAACAGCGACAGTTAATGAAAGTTCTATCGGTAGTGGTCACTTTAGTGAGACTCGTTTGGTGAATTGTAGTTCTGAAGATGTATCTTTGAAACAAAATGATAACGGCATTGCTCTGTCAGAGGTTCAATGTTTGTTAAGATTATGTGAACCGGACTCAAATCTTGCCGTTCCAGCTTTCGTGGATTCTGAATCGTTTCCTTTGATATCCAATCATATTAATGAAGTTTGATACTGATGAATGTACGAACTTTGAACTAAGTAGAACTAGAAACGTTATCGCATAAACTAA] consensusID : consensus_9251#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 182 fasta sequence [GCCAANAATTTTGCACGAGGTACTCCAGTGGAAAAACACTTCTATCCAATGGTTCACCTACCAACTGTCCAGAACTCTTTCGTGCATTAATGCTTCATTGTTGGAACTTCAATCCCTTGAAGCGACCAACATTCCTAGGACTATGCGCTCTACTTTCACCATGCTTTGGAGATGCGAAATTT] [+] EMBL CD080804 [GCCAANAATTTTGCACGAGGTACTCCAGTGGAAAAACACTTCTATCCAATGGTTCACCTACCAACTGTCCAGAACTCTTTCGTGCATTAATGCTTCATTGTTGGAACTTCAATCCCTTGAAGCGACCAACATTCCTAGGACTATGCGCTCTACTTTCACCATGCTTTGGAGATGCGAAATTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9251#1 TAGCTGATGGTATGGCATACTTATCTGCTAAACAGTATGTTCATAGAGATTTAGCCGCTC 60 consensus_9251#2 ------------------------------------------------------------ consensus_9251#0 ------------------------------------------------------------ consensus_9251#1 GTAATTGTCTTGTTGATTCCAGTCTTACGGTTAAAATTGGGGATTTTGGACTGTGTAGAG 120 consensus_9251#2 ------------------------------------------------------------ consensus_9251#0 ------------------------------------------------------------ consensus_9251#1 ATGTTTATGGACATAATTATTATCACAAAACAAGTCATGCTAAACTTCCAATTCGTTGGA 180 consensus_9251#2 ------------------------------------------------------------ consensus_9251#0 ------------------------------------------------------------ consensus_9251#1 TGGCCCCAGAATCTCTTCAAACTGCTTACTTTACAACACAATCAGATGTTTGGTCTTATG 240 consensus_9251#2 ------------------------------------------------------------ consensus_9251#0 ------------------------------------------CCTCGAGGCCAAAAATTC 18 consensus_9251#1 GTGTTGTTTTGTGGGAGATAGTTACTATGGCATGTCTTCCTTATCGTGGTATGTCTCATG 300 consensus_9251#2 ---------------------------------------------------------GCC 3 consensus_9251#0 GGCACGAGGTGGACATCAACTCTACCATTATTATCATCGTCGTCGTCATCACCAAACGTA 78 consensus_9251#1 AAGAAGTGGTCAAGTACGTTCTCAGTGGAAAAACACTTCTATCCAATGGTTCACCTACCA 360 consensus_9251#2 AANAATTTTGCACGAGGTACTCCAGTGGAAAAACACTTCTATCCAATGGTTCACCTACCA 63 consensus_9251#0 AAACAATCT-TATTTGCTTTCCTCGTC-AATATCACCTTCATTACGCAAACAAATGTTGG 136 ** * * * ** ** * *** * ** * consensus_9251#1 ACTGTCCAGAACTC---TTTCGTGCATTAATGCT-TCATTGTTGGAACTTCAATCCCTTG 416 consensus_9251#2 ACTGTCCAGAACTC---TTTCGTGCATTAATGCT-TCATTGTTGGAACTTCAATCCCTTG 119 consensus_9251#0 ATGGTGAAGATCTTAATTGTCACACATTGGGTTTATCAAAACAACAATTTACAAACTCTG 196 * ** *** ** * ** **** * *** ** ** * * ** consensus_9251#1 AAGCGACCAACATTCCTAGGACTATGCGCTCTACT--TTCACCATGCTT-GGAGATGCGA 473 consensus_9251#2 AAGCGACCAACATTCCTAGGACTATGCGCTCTACT--TTCACCATGCTTTGGAGATGCGA 177 consensus_9251#0 ACGATACATCTTTATTTAATAACATTCAATCAATTGGTTTAATGAATAAAGTAGCACCAG 256 * * ** * ** * ** * ** * * ** * * ** * consensus_9251#1 AATTTCGACTGGCTAGTTTTTTTTATCATGGTGAACAAAGTTTTGTAAATAGAGATAATC 533 consensus_9251#2 AATTT------------------------------------------------------- 182 consensus_9251#0 AAAGTCCATTAGTTATTATGCAATTGATGGCTAAAGGCGATCTAGCTAGTTATCTACGTT 316 ** * consensus_9251#1 GTTCAAAGGTTTTGGAAGCCCCTGCTGTTTCATTAGGTAAATTGAACATATCATGTAATC 593 consensus_9251#2 ------------------------------------------------------------ consensus_9251#0 ATTTAGGTGACAAAGGACAAGGTTCCGTTAATTCATCACA----AGCGTATCATGTAATC 372 consensus_9251#1 AAGATCCCGCACATGCACTTGCGTCTGCTTTGAGTACCTTATTCTGTGGTACTGATGAAG 653 consensus_9251#2 ------------------------------------------------------------ consensus_9251#0 AAGATCCCGCACATGCACTTGCGTCTGCTTTGAGTACCTTATTCTGTGGTACTGATGAAG 432 consensus_9251#1 ATTCTAGTTATGATTACAGTGATCGAAATATTGACCCTCCTGATGATTTTTCTGCACCGT 713 consensus_9251#2 ------------------------------------------------------------ consensus_9251#0 ATTCTAGTTATGATTACAGTGATCGAAATATTGACCCTCCTGATGATTTTTCTGCACCGT 492 consensus_9251#1 CAATGCAGTTTGGTGCCATTAGTCGAACAGCGACAGTTAATGAAAGTTCTATCGGTAGTG 773 consensus_9251#2 ------------------------------------------------------------ consensus_9251#0 CAATGCAGTTTGGTGCCATTAGTCGAACAGCGACAGTTAATGAAAGTTCTATCGGTAGTG 552 consensus_9251#1 GTCACTTTAGTGAGACTCGTTTGGTGAATTGTAGTTCTGAAGATGTATCTTTGAAACAAA 833 consensus_9251#2 ------------------------------------------------------------ consensus_9251#0 GTCACTTTAGTGAGACTCGTTTGGTGAATTGTAGTTCTGAAGATGTATCTTTGAAACAAA 612 consensus_9251#1 ATGATAACGGCATTGCTCTGTCAGAGGTTCAATGTTTGTTAAGATTATGTGAACCGGACT 893 consensus_9251#2 ------------------------------------------------------------ consensus_9251#0 ATGATAACGGCATTGCTCTGTCAGAGGTTCAATGTTTGTTAAGATTATGTGAACCGGACT 672 consensus_9251#1 CAAATCTTGCCGTTCCAGCTTTCGTGGATTCTGAATCGTTTCCTTTGATATCCAATCATA 953 consensus_9251#2 ------------------------------------------------------------ consensus_9251#0 CAAATCTTGCCGTTCCAGCTTTCGTGGATTCTGAATCGTTTCCTTTGATATCCAATCTTA 732 consensus_9251#1 TTAATGAAGTTTGATACTGATGAATGTACGAACTTTGAACTAAGTAGAACTAGAAACGTT 1013 consensus_9251#2 ------------------------------------------------------------ consensus_9251#0 T-AATGAAGTTTGATACTGATGAATGTACGAACTTTGAACTAAGTAGAACTAGAAACGTT 791 consensus_9251#1 ATCGCATAAACTAA---------------------------------------------- 1027 consensus_9251#2 ------------------------------------------------------------ consensus_9251#0 ATCGCATAAACTAAAAAAATATTTTTTAAAAATTGTCATTCCTTGTGATAGCTTTGTATG 851 consensus_9251#1 ------------------------------------------------------------ consensus_9251#2 ------------------------------------------------------------ consensus_9251#0 ATCTCATATTTCTACATTATTTTGCAAATTGTTTTCACCTTCTTTTTTGATAATAAATAA 911 consensus_9251#1 ------------------------------------------------------------ consensus_9251#2 ------------------------------------------------------------ consensus_9251#0 CTTTACTATGAAATTGTATAGTTGCCCAGACGCTTCAATTTTGCTACTGTTTATTCAGGT 971 consensus_9251#1 ------------------------------------------------------------ consensus_9251#2 ------------------------------------------------------------ consensus_9251#0 TGTTTTTCGAGATATTTGCCAAAAGTTAAAAATAACTGTCAAGTTCTTTTTAAACAAGAT 1031 consensus_9251#1 ------------------------------------------------------------ consensus_9251#2 ------------------------------------------------------------ consensus_9251#0 AACAGTTGATGATCAATACTGTTACTCTGCTTTTCACTTTAGATCATTAAATTTAGCCGG 1091 consensus_9251#1 --------------------------------------------- consensus_9251#2 --------------------------------------------- consensus_9251#0 TTTATGTATTTCGCGTGAAATTTTTAGTAAAAAAATTAAAAAGTT 1136 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||