cluster # 9263

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Schistosoma mansoni
cluster # 9263 cluster # 9263 Sequences # 9 consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9263#0 length = 863 sequences # 2
consensus_9263#1 length = 539 sequences # 5

consensus_9263#2 length = 289 sequences # 1
consensus_9263#3 length = 168 sequences # 1

consensusID : consensus_9263#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 863
fasta sequence

                              [GACGAAATGGCCATTCAGTAACTCTAGGATTTCAATGGTGGTCTAGGATTAATCAGTTCATGATCTCGATTAAAGCTCAGATATTTTTGTCGGTATTTATTAAATCATAATGTCAATTTAAATTTAAGATTTCTTAGCTTCTAGTATTACTATACTCGCTTGAATTTAAATCATAAAAAAAACTAAATTCATCGCGCTCTTGCATATTTAAATATATTTTAGGATATAAATTACTTGTAATTCTCATAATGTTTCAGTTATCACTGAGACGTATTTAAATAGTTGTTTCAATTTCATTATATATGATTACTGTATGGTGAAAATTACTTATCACTCATGATTGCAACTATGTATAAGAATTACTAAAAATCTCCATAAACAACCCCCTTATCATATGCTCACTAGTGACTGGCTCCATGAGGTATATCCTGGAGTTCTAGTGAGAAGCAGTAACCAGTGGAGTTCAACCAGGTCTGTTGGGAGATATCAGCTCACTGAAGACATTGGTGAATGGTTGTTCGATTTCGTGGATGGGTTGAAGTTAGACATAAACACCGTTGAATGCCGGCTCAGTGGTCTGTCGGTTAAGTGCTCTGGCTTAAAACCGGTAGGTCCTGGGCTCGACTCTCGCAAGTGCGGGATCGTGGATGCGCACTGCTGAGAAGTTCCACAATAGGATGAAACGGCCGTCCAGTGCTTACAGGTTTTCCATGGTGGTCTAGCTTCAATTGACTCATGATCTCAACTATACGAAGTTAATTGTTATATGTCTGTTGCGCTTTTCCTTTCCACATAATCTTTGAATATTCTTACAACTGTCCAATCGGCATTGTTACAGTTTTGTAGTCTTAATTTATTATGTA]

[+] EMBL CD090644             [GACGAAATGGCCATTCAGTAACTCTAGGATTTCAATGGTGGTCTAGGATTAATCAGTTCATGATCTCGATTAAAGCTCAGATATTTTTGTCGGTATTTATTAAATCATAATGTCAATTTAAATTTAAGATTTCTTAGCTTCTAGTATTACTATACTCGCTTGAATTTAAATCATAAAAAAAACTAAATTCATCGCGCTCTTGCATATTTAAATATATTTTAGGATATAAATTACTTGTAATTCTCATAATGTTTCAGTTATCACTGAGACGTATTTAAATAGTTGTTTCAATTTCATTATATATGATTACTGTATGGTGAAAATTACTTATCACTCATGATTGCAACTATGTATAAGAATTACTAAAAATCTCCATAAACAACCCCCTTATCATATGCTCACTAGTGACTGGCTCCATGAGGTATATCCTGGAGTTCTAGTGAGAAGCAGTAACCAGTGGAGTTCAACCAGGTCTGTTGGGAGATATCAGCTCACTGAAGACATTGGTGAA                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL CD072018             [                                                                                                                                                                                                                                                                                                                                                                                                         TATGCTCACTAGTGACTGGCTCCATGAGGTATCTCCTGGAGTTCCAGTGAGAAGTAGTAACCAGTGGAGTTCAACCAGGTCTGTTGGGAGAGATCAACTCACTGAAGACATTGGTGAATGGTTGTTCGATTTCGTGGATGGGTTGAAGTTAGACATAAACACCGTTGAATGCCGGCTCAGTGGTCTGTCGGTTAAGTGCTCTGGCTTAAAACCGGTAGGTCCTGGGCTCGACTCTCGCAAGTGCGGGATCGTGGATGCGCACTGCTGAGAAGTTCCACAATAGGATGAAACGGCCGTCCAGTGCTTACAGGTTTTCCATGGTGGTCTAGCTTCAATTGACTCATGATCTCAACTATACGAAGTTAATTGTTATATGTCTGTTGCGCTTTTCCTTTCCACATAATCTTTGAATATTCTTACAACTGTCCAATCGGCATTGTTACAGTTTTGTAGTCTTAATTTATTATGTA]




>consensus_9263#0
GACGAAATGGCCATTCAGTAACTCTAGGATTTCAATGGTGGTCTAGGATTAATCAGTTCA
TGATCTCGATTAAAGCTCAGATATTTTTGTCGGTATTTATTAAATCATAATGTCAATTTA
AATTTAAGATTTCTTAGCTTCTAGTATTACTATACTCGCTTGAATTTAAATCATAAAAAA
AACTAAATTCATCGCGCTCTTGCATATTTAAATATATTTTAGGATATAAATTACTTGTAA
TTCTCATAATGTTTCAGTTATCACTGAGACGTATTTAAATAGTTGTTTCAATTTCATTAT
ATATGATTACTGTATGGTGAAAATTACTTATCACTCATGATTGCAACTATGTATAAGAAT
TACTAAAAATCTCCATAAACAACCCCCTTATCATATGCTCACTAGTGACTGGCTCCATGA
GGTATATCCTGGAGTTCTAGTGAGAAGCAGTAACCAGTGGAGTTCAACCAGGTCTGTTGG
GAGATATCAGCTCACTGAAGACATTGGTGAATGGTTGTTCGATTTCGTGGATGGGTTGAA
GTTAGACATAAACACCGTTGAATGCCGGCTCAGTGGTCTGTCGGTTAAGTGCTCTGGCTT
AAAACCGGTAGGTCCTGGGCTCGACTCTCGCAAGTGCGGGATCGTGGATGCGCACTGCTG
AGAAGTTCCACAATAGGATGAAACGGCCGTCCAGTGCTTACAGGTTTTCCATGGTGGTCT
AGCTTCAATTGACTCATGATCTCAACTATACGAAGTTAATTGTTATATGTCTGTTGCGCT
TTTCCTTTCCACATAATCTTTGAATATTCTTACAACTGTCCAATCGGCATTGTTACAGTT
TTGTAGTCTTAATTTATTATGTA

consensusID : consensus_9263#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 539
fasta sequence

                              [ACACCAACACCAACACCAACACCAACCAACCTATAACTCACTAACACTGTCTCATACAGTTGCCTCGTCAATTCACAAACCTCTTCGCCACACTCAAAAACCACACATCCTATGCTGGACTATCCAGTTAGTTCTACTACGACCCAACACCAACACCAACACCAACACCAACCAACCTATAACTCACTAACACTGTCTCATACAGTTGCCTCGTCAATTCACAAACCTCTTCGCCACACTCAAAAACCACACATCCTATGCTGTACTATCCAGTTAGTTCTACTACGACCCAACACCAACACCAACACCAACACCAACACCAACCAACCTATAACTCACTAACACTGTCTCATACAGTTGCCTCGTCAATTCACAAACCTCTTCGCCACACTCAAAAACCACACATCCTATGCTGTACTATCCAGTTAGTTCTACTACGACCCAACACCAACACCAACACCAACACCAACCAACCTATAACTCACTAACACTGTCTCATACAGTTGCCTCGTCAATTCACAAACCTCTTCGCCACACTC]

[+] EMBL CD119981             [ACACCAACACCAACACCAACACCAACCAACCTATAACTCACTAACACTGTCTCATACAGTTGCCTCGTCAATTCACAAACCTCTTCGCCACACTCAAAAACCACACATCCTATGCTGTACTATCCAGTTAGTTCTACTACGACCCAACACCAACACCAACACCAACACCAACCAACCTATAACTCACTAACACTGTCTCATACAGTTGCCTCGTCAATTCACAAACCTCTTCGCCACACTCAAAAACCACACATCCTATGCTGTACTATCCAGTTAGTTCTACTACGACCCAACACCAACACCAACACCAACACCAACACCAACCAACCTATAACTCACTAACACTGTCTCATACTGTTGCCTCGTCAATTCACAAACCTCTTCGCCACACTCAAAAACCACACATCCTATGCTGTACTATCCAGTTAGTTCTACTACGACCCAACACCAACACCAACACCAACACCAACCAACCTATAACTCACTAACACTGTCTCATACAGTTGCCTCGTCAATTCACAAACCTCTTCGCCACACTC]
[+] EMBL CD119969             [ACACCAACACCAACACCAACACCAACCAACCTATAACTCACTAACACTGTCTCATACAGTTGCCTCGTCAATTCACAAACCTCTTCGCCACACTCAAAAA CACACATTCTATGCTGGACTATCCAATTAGTTCTACTACGACCCAACACCAACACCAACACCAACACCAACCAACCTATAACTCACTAACACTGGCTCATACAGGCGGCTCGTCAATTCACAAACCTCTTCGCCACACTCAAAAACCACACATCCTATGCTGGACTATCCAGTTAGTTCTACTACGACCCAACACCAACACCAACACCAACACCAACACCAACCAACCTATAACTCACTAACACTGGCTCATACAGGTGCCTCGGCAATTCACAAACCTCTTCGCCACACTCAAAAACCACACATCCTATGCTGGACTATCCAGTTAGTTCTACTACGACCCAACACCAACACCAACACCAACACCAACCAACCTATAACTCACTAACACTGGCTCATACAGTTGC                                ]
[+] EMBL CD119780             [      ACACCAACACCAACACCAACCAACCTATAACTCACTAACACTGTCTCATACAGATGCCTCGGCAATTCACAAACCTATTCGTCACACTCAAAAACCACACATACTATGCTGAACTATCCAGATAGTTCTACTACGACCCAACACCAACACCAACACCAACACCAACCAACCTATAACTCACTAACACTGTCTCAGACAGATGCCTCGGCAATTCACAAACCTATTCGTCACACTCAAAAACCACACATACTATGCTGAACTAGCCAGATAGATCTACTACGACCCAGCACCAACACCAACACCAACACCAACACCAACCAACCTATAACTCACTAACACTGTCTCATACAGATGCCTCGGCAATTCACAAACCTATTCGTCACACTCAAAAACCACACATCCTATGCTGTACTAGCCAGTTAGATCTACTACGACCCAGCACCAACACCAACACCAACACCAACCAACCTATAACTCACTAACACTGTCTCAGACAGATGCCTCGGCAATTGACAAAC               ]
[-] EMBL CD114025             [                                                                                                                               TTAGTTANACGACGACCCAACACCAACACCAACACCAACACCAACCAACCTATAACTCACTAACACTGTCTCATACAGATGCCTCGTCAATTCACAAACCTCTTCGCCACACTCAAAAACCACACATCCTATGCTGTACTATCCAGTTAGTTCTAGTACGACCCAACACCAACACCAACACCAACACCAACACCAACCAACCTATAACTCACTAACACTGTCTCATACAGTTGCCTCGTCAATTCACAAACCTATTCGCCACACTCAAAAACCACACATCCTATGCTGTACTATCCAGATAGATCTACTACGAC      CCAACACCAACACCAACACCAACCAACCTATAACTCACTAACACTGTCTCATACAGTTGCCT                              ]
[-] EMBL CD163721             [                                                                                                                                                                                 TATAACTCACTAACACTGTCTCATACAGTTGCCTCGTCAATTCACAAACCTCTTCGCCACACTCAAAAACCACACATCCTATGCTGTACTATCCAGTTAGTTCTACTTCGACCCAACACCAACACCAACACCAACACCAACACCAACCAACCTATAACTCACTAACACTGTCTCATACAGTTGCCTCGTCAATTCACAAACCTCTTCGCCACACTTAAAAACCACACATCCTATGCTGTACTATCCAGTTAGTTCTACTACGACCCAACACCAACACCAACACCAACACCAACCAACCTATAACTCACTAACACTGTCTCATACAGTTGCCTCGTCAATTC                     ]




>consensus_9263#1
ACACCAACACCAACACCAACACCAACCAACCTATAACTCACTAACACTGTCTCATACAGT
TGCCTCGTCAATTCACAAACCTCTTCGCCACACTCAAAAACCACACATCCTATGCTGGAC
TATCCAGTTAGTTCTACTACGACCCAACACCAACACCAACACCAACACCAACCAACCTAT
AACTCACTAACACTGTCTCATACAGTTGCCTCGTCAATTCACAAACCTCTTCGCCACACT
CAAAAACCACACATCCTATGCTGTACTATCCAGTTAGTTCTACTACGACCCAACACCAAC
ACCAACACCAACACCAACACCAACCAACCTATAACTCACTAACACTGTCTCATACAGTTG
CCTCGTCAATTCACAAACCTCTTCGCCACACTCAAAAACCACACATCCTATGCTGTACTA
TCCAGTTAGTTCTACTACGACCCAACACCAACACCAACACCAACACCAACCAACCTATAA
CTCACTAACACTGTCTCATACAGTTGCCTCGTCAATTCACAAACCTCTTCGCCACACTC

consensusID : consensus_9263#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 289
fasta sequence

                              [TGCATCGATTTTCGGTAATGGAGTATTAGTCGATGGTTTGAATGGTGTTGTTGGAGTAGCGACTGGAGTTGACGTTGGTGTTGGTGTTGGTGTTGGGTCGTAGTAGAACTAACTGGATAGTACAGCATAGGATGTGTGGTTTTTGAGTGTGGCGAAGAGGTTTGTGAATTGACGAGGCAACTGTATGAGACAGTGTTAGTGAGTTATAGGTTGGTTGGTGTTGGTGTTGGTGTTGGTGTTGGGTCGTAGTGGAACTAACTGGATAGTACAGCATAGGATGTGTGGTTTT]

[+] EMBL CD135241             [TGCATCGATTTTCGGTAATGGAGTATTAGTCGATGGTTTGAATGGTGTTGTTGGAGTAGCGACTGGAGTTGACGTTGGTGTTGGTGTTGGTGTTGGGTCGTAGTAGAACTAACTGGATAGTACAGCATAGGATGTGTGGTTTTTGAGTGTGGCGAAGAGGTTTGTGAATTGACGAGGCAACTGTATGAGACAGTGTTAGTGAGTTATAGGTTGGTTGGTGTTGGTGTTGGTGTTGGTGTTGGGTCGTAGTGGAACTAACTGGATAGTACAGCATAGGATGTGTGGTTTT]




>consensus_9263#2
TGCATCGATTTTCGGTAATGGAGTATTAGTCGATGGTTTGAATGGTGTTGTTGGAGTAGC
GACTGGAGTTGACGTTGGTGTTGGTGTTGGTGTTGGGTCGTAGTAGAACTAACTGGATAG
TACAGCATAGGATGTGTGGTTTTTGAGTGTGGCGAAGAGGTTTGTGAATTGACGAGGCAA
CTGTATGAGACAGTGTTAGTGAGTTATAGGTTGGTTGGTGTTGGTGTTGGTGTTGGTGTT
GGGTCGTAGTGGAACTAACTGGATAGTACAGCATAGGATGTGTGGTTTT

consensusID : consensus_9263#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 168
fasta sequence

                              [ACTCACTAACACTGTCTCATACAGTTGCCTCGATCGAACTCCCGCGTCCGCGATGCACTCAAAAACCACACATCCTATGCTGTACTATCCAGTTAGTTCTACTACGACCCAACACCAGCACCAACACCAACACCAACCAGCCTATAACTCACTAACACTGTCTCATAC]

[+] EMBL CD143106             [ACTCACTAACACTGTCTCATACAGTTGCCTCGATCGAACTCCCGCGTCCGCGATGCACTCAAAAACCACACATCCTATGCTGTACTATCCAGTTAGTTCTACTACGACCCAACACCAGCACCAACACCAACACCAACCAGCCTATAACTCACTAACACTGTCTCATAC]




>consensus_9263#3
ACTCACTAACACTGTCTCATACAGTTGCCTCGATCGAACTCCCGCGTCCGCGATGCACTC
AAAAACCACACATCCTATGCTGTACTATCCAGTTAGTTCTACTACGACCCAACACCAGCA
CCAACACCAACACCAACCAGCCTATAACTCACTAACACTGTCTCATAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9263#1      ------------------------------------------------------------
consensus_9263#3      ------------------------------------------------------------
consensus_9263#0      GACGAAATGGCCATTCAGTAACTCTAGGATTTCAATGGTGGTCTAGGATTAATCAGTTCA 60
consensus_9263#2      ------------------------------------------------------------
                                                                                  

consensus_9263#1      ------------------------------------------------------------
consensus_9263#3      ------------------------------------------------------------
consensus_9263#0      TGATCTCGATTAAAGCTCAGATATTTTTGTCGGTATTTATTAAATCATAATGTCAATTTA 120
consensus_9263#2      ------------------------------------------------------------
                                                                                  

consensus_9263#1      -------------------------------ACACCAACACCAACACCAACACCAACCAA 29
consensus_9263#3      ------------------------------------------------------------
consensus_9263#0      AATTTAAGATTTCTTAGCTTCTAGTATTACTATACTCGCTTGAATTTAAATCATAAAAAA 180
consensus_9263#2      ------------------------------------------------------------
                                                                                  

consensus_9263#1      CCTATAACTCACTAACACTGTCTCATACAGTTGCCTCGTCAATTCACAAACCTCTTCGCC 89
consensus_9263#3      ------------------------------------------------------------
consensus_9263#0      AACTAAATTCATCGCGCTCTTGCATATTTAAATATATTTTAGGATATAAATTACTTGTAA 240
consensus_9263#2      ------------------------------------------------------------
                                                                                  

consensus_9263#1      ACACTCAAAAACCACACATCCTATGCTGGACTATCCAGTTAGTTCTACTACGACCCAACA 149
consensus_9263#3      ------------------------------------------------------------
consensus_9263#0      TTCTCATAATGTTTCAGTTATCACTGAGACGTATTTAAATAGTTGTTTCAATTTCATTAT 300
consensus_9263#2      ------------------------------------------------------------
                                                                                  

consensus_9263#1      CCAACACCAACACCAACACCAACCAACCTATAACTCACTAACACTGTCTCATACAGTTGC 209
consensus_9263#3      ------------------------------------------------------------
consensus_9263#0      ATATGATTACTGTATGGTGAAAATTACTTATCACTCATGATTGCAACTATGTATAAGAAT 360
consensus_9263#2      ------------------------------------------------------------
                                                                                  

consensus_9263#1      CTCGTCAATTCACAA------ACCTCTTCGCCACACTCAAAAACCACACATCCTATGCTG 263
consensus_9263#3      ------------------------------------------------------------
consensus_9263#0      TACTAAAAATCTCCATAAACAACCCCCTTATCATATGCTCACTAGTGACTGGCTCCATGA 420
consensus_9263#2      -----------------------TGCATCGATTTTCGGTAATGGAGTATTAG-TCGATGG 36
                                                                                  

consensus_9263#1      TACTATCCAGTTAGTTCTACTACGACCCAACACCAACACCAACACCAACACCAACACCAA 323
consensus_9263#3      ------------------------------------------------------------
consensus_9263#0      GGTATATCCTGGAGTTCTAGTGAGAAGCAGTAACCAGTGGAGTTCAACCAGGTCTGTTGG 480
consensus_9263#2      TTTGAATGGTGTTGTTGGAGTAGCGACTGGAGTTGACGTTGGTGTTGGTGTTGGTGTTGG 96
                                                                                  

consensus_9263#1      CCAACC-TATAACTCACT-AACACTGTCTCATACAGTTGCCTCGTCAATTCACAAACCTC 381
consensus_9263#3      -----------ACTCACT-AACACTGTCTCATACAGTTGCCTCGATCGAACTCCCGCGTC 48
consensus_9263#0      GAGATA-T-CAGCTCACTGAAGACATTGGTGAATGGTTGT-TCGATTTCGTGGATGGGTT 537
consensus_9263#2      GTCGTAGTAGAACTAACTGGATAGTACAGCATA-GGATGTGTGGTTTTTGAGTGTGGCGA 155
                                  ** ***  * *         *  * **  * *                

consensus_9263#1      TTCGCCACACTCAAAAACCACACAT-CCTATGCTGTACTATCCAGTTAGTTC--TACTAC 438
consensus_9263#3      CGCGATGCACTCAAAAACCACACAT-CCTATGCTGTACTATCCAGTTAGTTC--TACTAC 105
consensus_9263#0      GAAGTTAGACATAAACACCGTTGAA-TGCCGGCT-CAGTGGTCTGTCGGTTAAGTGCTCT 595
consensus_9263#2      AGAGGTTTGTGAATTGACGAGGCAACTGTATGAGACAGTG-TTAGTGAGTTA--TAGGTT 212
                         *        *   **     *       *    * *     **  ***   *     

consensus_9263#1      GACCCAACACCAACA----CCAACACCAACACCAACCAAC-CTATAACTCA-CTAACACT 492
consensus_9263#3      GACCCAACACCAGCA----CCAACACCAACACCAACCAGC-CTATAACTCA-CTAACACT 159
consensus_9263#0      GGCTTAAAACCGGTAGGTCCTGGGCTCGACTCTCGCAAGT-GCGGGA-TCG-TGGATGCG 652
consensus_9263#2      GG-TTGGTGTTGGTG----TTGGTGTTGGTGTTGGGTCGTAGTGGAACTAACTGGATAGT 267
                      *                                             * *      *    

consensus_9263#1      GTCTCATACAGTTGCCTCGTCAATTCACAAACCTCTTCGCCACACTC------------- 539
consensus_9263#3      GTCTCATAC--------------------------------------------------- 168
consensus_9263#0      CACTGCTGAGAAGTTCCACAATAGGATGAAACGGCCGTCCAGTGCTTACAGGTTTTCCAT 712
consensus_9263#2      ACAGCATAGGATGTGTGGTTTT-------------------------------------- 289
                            *                                                     

consensus_9263#1      ------------------------------------------------------------
consensus_9263#3      ------------------------------------------------------------
consensus_9263#0      GGTGGTCTAGCTTCAATTGACTCATGATCTCAACTATACGAAGTTAATTGTTATATGTCT 772
consensus_9263#2      ------------------------------------------------------------
                                                                                  

consensus_9263#1      ------------------------------------------------------------
consensus_9263#3      ------------------------------------------------------------
consensus_9263#0      GTTGCGCTTTTCCTTTCCACATAATCTTTGAATATTCTTACAACTGTCCAATCGGCATTG 832
consensus_9263#2      ------------------------------------------------------------
                                                                                  

consensus_9263#1      -------------------------------
consensus_9263#3      -------------------------------
consensus_9263#0      TTACAGTTTTGTAGTCTTAATTTATTATGTA 863
consensus_9263#2      -------------------------------