These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9265#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1100 fasta sequence [CTTCAATATCTCTATTGACGGGGCACGAATTCGGTTGTATTTGCTTGTTACTGTTTTATAACCATCTCAAGAAATCATTATAACAATGCAATATATACCAACCTATACATGATATGTCAATCATGGAAATCTAGTTTATTGATATGCAGAGCATTTTATTGGATATAATATTATCAGCATCATTCCTAACAACATTCTGTCATAGTATAAAAATACGTCTGATTTTACTGTTTAACCAAACGCCCGCCTGTCAAAGATAGCCCATGGTTAAAAGCAAAGTAATATTGATGCCAGGATTACCAGGTTGGGGCTTGACCGATGGGTACTGGGAAAGTGCACTAGACAGTTCCATTATTCCCACCAATTTATCAATCTCATGTGTTGACCCCGCATCTATAGCTTCACATCACGACAGAGCTTGCGAAATATTTGCACAGATAACCGGTACATTGGTGGATTATGGATTAGGACATTCAAAATTTTTTGGACATTCCCGCTGGGGTAGGGATTATAGTAAAACACCTCCACTGTATTTAGAATGGGGACCCTCAAACCCCATTCACCTTGTGTGTCATTCTACTGCCATAAATACAGCCAGAGTTCTCCAAAGACTTCTCGAAATCAATTTTTGGAATAAGGAAACAAGTGCTAAGTGGATTTTGTCAATTACTTCCATTAATGGTGCACTCAATGAATCTGCTGTATCAGATGTGATTAATAAGGAAATTTTACATCTGATCAACGGAAACTTTATGTGTAAAGAATGCAAAAATCTTGGTTGTCCAGCTTGTATCCATACAAAGGTCCAAAAGGCAGCAAAAATACTTAGTCGAGCTGTCATATGGGCGGCCACGTCAAAACTGAAACTAGACTCTGAACAACTTAGTCGAGCCTTAAACTGGTCCATAGGTCACTGGGTTTCTGATGCTGGTGATAGTCCTCAATCTCTATCTGGGGAGGAAGTTGTGAATAAGTTGAATTCTAGTTTGAAGTGTGGAATATTTAGTTCAGGTGATAACATAATTTATGATAATACACGGGAGGGTATTTCCAAGCTTGAAGAGATTCTCCACAATTCATCGAACATTAAGGGCTCCTTG] [+] EMBL CD188805 [CTTCAATATCTCTATTGACGGGGCACGAATTCGGTTGTATTTGCTTGTTACTGTTTTATAACCATCTCAAGAAATCATTATAACAATGCAATATATACCAACCTATACATGATATGTCAATCATGGAAATCTAGTTTATTGATATGCAGAGCATTTTATTGGATATAATATTATCAGCATCATTCCTAACAACATTCTGTCATAGTATAAAAATACGTCTGATTTTACTGTTTAACCAAACGCCCGCCTGTCAAAGATAGCCCATGGTTAAAAGCAAAGTAATATTGAT ] [-] EMBL BG930422 [ GCTTGTTACTGTTTTATAACCATCTCAAGAAATCATTAGAACAATGCAATATATACCAACCTATACATGATATGTCAATCATGGAAATCTAGTTTATTGATATGCAGAGCATTTTATTGGATATAATATTATCAGCATCATTCCTAACAACATTCTGTCATAGTATAAAAATACGTCTGATTTTACTGTTTAACCAAACGCCCGCCTGTCAAAGATAGCCCATGGTTAAAAGCAAAGTAATATTGATGCCAGGATTACCAGGTTGGGGCTTGACCGATGGGTACTGGGAAAGTGCACTAGACAGTTCCATTATTCCCACCAATTTATCAATCTCATGTGTTGACCCCGCATCTA ] [+] EMBL CD083332 [ gcacgaggAAACGCCCGCCTGTCAAAGATAGCCCATGGTTAAAAGCAAAGTAATATTGATGCCAGGATTACCAGGTTGGGGCTTGACCGATGGGTACTGGGAAAGTGCACTAGACAGTTCCATTATTCCCACCAATTTATCAATTTCATGTGTTGACCCAAGTCCTATAGCTTCACATCACGACAGAGCTTGCGAAATATTTGCACAGATAACCGGTACATTGGTGGATTATGGATTAGGACATTCAAAATTTTTTGGACATTCCCGCTGGGGTAGGGATTATAGTAAAACACCTCCACTGTATTTAGAATGGGGACCCTCAAACCCCATTCACCTTGTGTGTCATTCTACTGCCATAAATACAGCCAGAGTTCTCCAAAGACTTCTCGAAATCAATTTTTGGAATAAGGAAACAAGTGCTAAGTGGATTTTGTCAATTACTTCCATTAATGGTGCACTCAATGAATCTGCTGTATCAGATGTGATT ] [+] EMBL CD115757 [ CATTCAAAATTTTTTGGACATTCCCGCTGGGGTAGGGATTATAGTAAAACACCTCCACTGTATTTAGAATGGGGACCCTCAAACCCCATTCACCTTGTGTGTCATTCTACTGCCATAAATACAGCCAGAGTTCTCCAAAGACTTCTCGAAATCAATTTTTGGAATAAGGAAACAAGTGCTAAGTGGATTTTGTCAATTACTTCCATTAATGGTGCACTCAATGAATCTGCTGTATCAGATGTGATTAATAAGGAAATTTTACATCTGATCAACGGAAACTTTATGTGTAAAGAATGCAAAAATCTTGGTTGTCCAGCTTGTATCCATACAAAGGTCCAAAAGGCAGCAAAAATACTTAGTCGAGCTGTCATATGGGCGGCCACGTCAAAACTGAAACTAGACTCTGAACAACTTAGTCGAGCCTTAAACTGGTCCATAGGTCACTGGGTTTCTGATGCTGGTGATAGTCCTCAATCTCTATCTGGGGA ] [+] EMBL CD084298 [ CAAGTGCTAAGTGGATTTTGTCAATTACTTCCATTAATGGTGCACTCAATGAATCTGCTGTATCAGATGTGATTAATAAGGAAATTTTACATCTGATCAACGGAAACTTTATGTGTAAAGAATGCAAAAATCTTGGTTGTCCAGCTTGTATCCATACAAAGGTCCAAAAGGCAGCAAAAATACTTAGTCGAGCTGTCATATGGGCGGCCACGTCAAAACTGAAACTAGACTCTGAACAACTTAGTCGAGCCTTAAACTGGTCCATAGGTCACTGGGTTTCTGATGCTGGTGATAGTCCTCAATCTCTATCTGGGGAGGAAGTTGTGAATAAGTTGAATTCTAGTTTGAAGTGTGGAATATTTAGTTCAGGTGATAACATAATTTATGATAATACACGGGAGGGTATTTCCAAGCTTGAAGAGATTCTCCACAATTCATCGAACATTAAGGGCTCCTTG] consensusID : consensus_9265#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 905 fasta sequence [TCGAGCCAATAATTCGGCACGAGGGCAAAAATACTTAGTCGAGCTGTCATATGGGCGGCCACGTCAAAACTGAAACTAGACTCTGAACAACTTAGTCGAGCCTTAAACTGGTCCATAGGTCACTGGGTTTCTGATGCTGGTGATAGTCCTCAATCTCTATCTGGGGAGGAAGTTGTGAATAAGTTGAATTCTAGTTTGAAGTGTGGAATATTTAGTTCAGGTGATAACATAATTTATGATAATACACGGGAGGGTATTTCCAAGCTTGAAGAGATTCTCCACAATTCATCGAACATTAAGGGCTCCTTGAAACGTGTTCCGGATTTTATCCACAGTGGTACATTTTATCTTTCCCTATTTTCCAGTGCAACTATGTCATCTACTCTTAATGTACCCTCTGAAATGTCACCTATATTATGGCCATTTGCTGCTATCCTTTTGGATAGAACTAACGACAACTGTCTTGATGACCATACGAAAAAAATAATACATAAGATACAGGAAATAAGCAATGATGTGGACCCATTAAGGGACAATGATGGTCTGGTTACTGTAATAAACCAGTGTATACCGCGTGGAGCCGAATCATTTGTTGAAGTGTTTCC-AAACAAGAATGTTTGTTGTCACTTCATGAAAGTATAAGGCCTGGAGTATGGTACATTGATAATGTAAATAGATGGATTGATGGAATCATTTGTTGAAGTGTTTCCAAAACAAGAATGTTTGTTGTCACTTCATGAAAGTATAAGGCCTGGAGTATGGTACATTGATAATGTAAATAGATGGATTGATGGAATTCAGAAGAATGAGTCTCATCTTGATGTCGATTGTGGAAAAGCCAGTAAAACCAGTTGCACATCTAACAAAAGAAAGTCCGAATTTCTATGGGATCATTTTGATGCTTG] [+] EMBL CD082754 [TCGAGCCAATAATTCGGCACGAGGGCAAAAATACTTAGTCGAGCTGTCATATGGGCGGCCACGTCAAAACTGAAACTAGACTCTGAACAACTTAGTCGAGCCTTAAACTGGTCCATAGGTCACTGGGTTTCTGATGCTGGTGATAGTCCTCAATCTCTATCTGGGGAGGAAGTTGTGAATAAGTTGAATTCTAGTTTGAAGTGTGGAATATTTAGTTCAGGTGATAACATAATTTATGATAATACACGGGAGGGTATTTCCAAGCTTGAAGAGATTCTCCACAATTCATCGAACATTAAGGGCTCCTTGAAACGTGTTCCGGATTTTATCCACAGTGGTACATTTTATCTTTCCCTATTTTCCAGTGCAACTATGTCATCTACTCTTAATGTACCCTCTGAAATGTCACCTATATTATGGCCATTTGCTGCTATCCTTTTGGATAGAACTAACGACAACTGTCTTGATGACCATACGAAAAAAATAATACATAAGATACAGGAAATAAGCAATGATGTGGACCCATTAAGGGACAATGATGGTCTGGTTACTGTAATAAACCAGTGTATACCGCGTGGAGCCGAATCATTTGTTGAAGTGTTTCC AAACAAGAATGTTTGTTGTCACTTCATGAAA ] [+] EMBL CD083616 [ TGGGCGGCCACGTCAAAACTGAAACTAGACTCTGAACAACTTAGTCGAGCCTTAAACTGGTCCATAGGTCACTGGGTTTCTGATGCTGGTGATAGTCCTCAATCTCTATCTGGGGAGGAAGTTGTGAATAAGTTGAATTCTAGTTTGAAGTGTGGAATATTTAGTTCAGGTGATAACATAATTTATGATAATACACGGGAGGGTATTTCCAAGCTTGAAGAGATTCTCCACAATTCATCGAACATTAAGGGCTCCTTGAAACGTGTTCCGGATTTTATCCACAGTGGTACATTTTATCTTTCCCTATTTTCCAGTGCAACTATGTCATCTACTCTTAATGTACCCTCTGAAATGTCACCTATATTATGGCCATTTGCTGCTATCCTTTTGGATAGAACTAACGACAACTGTCTTGATGACCATACGAAAAAAATAATACATAAGATACAGGAAATAAGCAATG TGTGGACCCATTAAGGGACAATGATGGTCTGGTTACTGTAATAAACCAGTGTATACCGCGTGGAGCCGAATC ] [+] EMBL CD084273 [ CTTAATGTACCCTCTGAAATGTCACCTATATTATGGCCATTTGCTGCTATCCTTTTGGATAGAACTAACGACAACTGTCTTGATGACCATACGAAAAAAATAATACATAAGATACAGGAAATAAGCAATGATGTGGACCCATTAAGGGACAATGATGGTCTGGTTACTGTAATAAACCAGTGTATACCGCGTGGAGCCGAATCATTTGTTGAAGTGTTTCCAAAACAAGAATGTTTGTTGTCACTTCATGAAAGTATAAGGCCTGGAGTATGGTACATTGATAATGTAAATAGATGGATTGATGGAATCATTTGTTGAAGTGTTTCCAAAACAAGAATGTTTGTTGTCACTTCATGAAAGTATAAGGCCTGGAGTATGGTACATTGATAATGTAAATAGATGGATTGATGGAATTCAGAAGAATGAGTCTCATCTTGATGTCGATTGTGGAAAAGCCAGTAAAACCAGTTGCACATCTAACAAAAGAAAGTCCGAATTTCTATGGGATCATTTTGATGCTTG] consensusID : consensus_9265#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 547 fasta sequence [AAGGTTTATTTTACTTAAAAGAGTTATTAGAGAGAAAGTGTACAGAAGAAATGTATAAAAATACATTACGATAAAGTGATCTTTGAAAATCAAGAGGTACTTGTTCCTGAGATGATTTGAGTAGAGTTCTCGACCAACAAGCATCAAAATGATCCCATAGAAATTCGGACTTTCTTTTGTTAGATGTGCAACTGGTTTTACTGGCTTTTCCACAATCGACATCAAGATGAGACTCATTCTTCTGAATTCCATCAATCCATCTATTTACATTATCAATGGACCATACTCCAGGCCTTATACTTTCATGAAGTGACAACAAACATTCTTGTTTTGGAAACACTTCAACAAATGATTCGGCTCCACGCGGTATACACTGGTTTATTACAGTAACCAGACCATCATTGTCCCTTAATGGGTCCACATCATTGCTTATTTCCTGGATCTTATGTATTATTTTTTTCGTATGGGCATCAAGACAGTTGTCGTTAGTTCTATCCAAAAGGATAGCAGCAAATGGCCATAATATAGGTGACATTTCAGAGGGTAC] [+] EMBL CD076344 [AAGGTTTATTTTACTTAAAAGAGTTATTAGAGAGAAAGTGTACAGAAGAAATGTATAAAAATACATTACGATAAAGTGATCTTTGAAAATCAAGAGGTACTTGTTCCTGAGATGATTTGAGTAGAGTTCTCGACCAACAAGCATCAAAATGATCCCATAGAAATTCGGACTTTCTTTTGTTAGATGTGCAACTGGTTTTACTGGCTTTTCCACAATCGACATCAAGATGAGACTCATTCTTCTGAATTCCATCAATCCATCTATTTACATTATCAATGGACCATACTCCAGGCCTTATACTTTCATGAAGTGACAACAAACATTCTTGTTTTGGAAACACTTCAACAAATGATTCGGCTCCACGCGGTATACACTGGTTTATTACAGTAACCAGACCATCATTGTCCCTTAATGGGTCCACATCATTGCTTATTTCCTGGATCTTATGTATTATTTTTTTCGTATGGGCATCAAGACAGTTGTCGTTAGTTCTATCCAAAAGGATAGCAGCAAATGGCCATAATATAGGTGACATTTCAGAGGGTAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9265#0 CTTCAATATCTCTATTGACGGGGCACGAATTCGGTTGTATTTGCTTGTTACTGTTTTATA 60 consensus_9265#1 ------TCGAGCCAATAATTCGGCACGAGGGCAAAAATACTTAGTCGA-GCTGTCATATG 53 consensus_9265#2 ------------------------------------------------------------ consensus_9265#0 A----CCATCTCAAGAAATCATTATAACAATG--CAATATATACCAACCTATACATGATA 114 consensus_9265#1 GGCGGCCACGTCAAAACTGAAACTAGACTCTGAACAACTTAGTCGAGCCTTAAACTGGTC 113 consensus_9265#2 ------------------------------------------------------------ consensus_9265#0 TGTCAATCA-TGGAAATCTAGT-TTATTGATA-TGCAGAGCATTTTATTGGATATAATAT 171 consensus_9265#1 CATAGGTCACTGGGTTTCTGATGCTGGTGATAGTCCTCAATCTCTATCTGGGGAGGAAGT 173 consensus_9265#2 ------------------------------------AAGGTTTATTTTACTTAAAAGAGT 24 * * * * consensus_9265#0 TATCAGCATCATTCCTAACAACATTCTGTCATAGTATAAAAATACGTCTGATTTTACTGT 231 consensus_9265#1 TGTGAATA--------AGTTGAATTCTAGTTTGAAGTGTGGA-ATATTTAGTTCAGGTGA 224 consensus_9265#2 TATTAGAGA-------GAAAGTGTACAGAAGAAATGTATAAAAATACATTAC------GA 71 * * * * * * * * * * consensus_9265#0 TTAACCAAACGCCCGCCTGTCAAAGATAGCCCATGGTTAAAAGCAAAGTAATATTGATGC 291 consensus_9265#1 T-AACATAATTTATGATAATACACGGGAGGGTATTTCCAAGCTTGAAGAGATTCT----C 279 consensus_9265#2 T-AAAGTGATCTTTGAAAATCAAGAGGTACTTGTTCCTGAGATGATTTGAGTAGAG--TT 128 * ** * * * * * * * consensus_9265#0 CAGGATTACCAGGTTGGGGCTTGACCGATGGGTACTGGGAAAGTGCACTAGACAGTTCCA 351 consensus_9265#1 CACAATT--CA---TCGAAC---ATTAAGGGCTCCTTGAAACGTGTTCCGGATTTTATCC 331 consensus_9265#2 CTCGACCAACA------AGCATCAAAATGATCCCATAGAAATTCGGACTTTCTTTTGTTA 182 * * ** * * * * ** * * * consensus_9265#0 TTATTCCCACCAATTTATCAATCTCATGTGTTGACCCCGCATCTATAGCTTCACATCACG 411 consensus_9265#1 ACAGTGGTAC-ATTTTATCTTTCCC-TAT-TTTCCAGTGCAACTATGTCATCTACTCTTA 388 consensus_9265#2 GATGTGCAACTGGTTTTACTGGCTTTTCCACAATCGACATCAAGATGAGACTCATTCTTC 242 * ** *** * * * * ** ** consensus_9265#0 ACAGAGCTTGCGAAATATTTGCACAGATAACCGGTACAT--TGGTGGATTATGGAT-TAG 468 consensus_9265#1 ATGTACCCTCTGAAATGTC-ACCTATATTATGGCCATTTGCTGCTATCCTTTTGGA-TAG 446 consensus_9265#2 TGAATTCCATCAATCCATCTATTTACATTATCAATGGAC-----CATACTCCAGGCCTTA 297 * * * * ** * * * * consensus_9265#0 GACATTCAA-AATTTTTTGGACATTCCCGCTGGGGTAGGGATTATAGTAAAACACCTCCA 527 consensus_9265#1 AACTAACGACAACTGTCTTGATGACCATAC-GAAAAAAATAATACA-TAAGATACAGGAA 504 consensus_9265#2 TACTTTCATGAAGTGAC--AACAAACATTCTTGTTTTGGAAACACTTCAACAAATGATTC 355 ** * ** * * * * * * ** * * consensus_9265#0 CTGTATTTAGAATGGGGACCCTCAAACCCCATTCACCTTGTGTGTCATTCTACTGCCATA 587 consensus_9265#1 ATA-AGCAATGATGTGGACCCATTAA-----GGGACAATGATGGTCTGGTTACTGTAATA 558 consensus_9265#2 GGCTCCACGCGGTATACACTGGTTTATTACAGTAACCA-GACCATCATTGTCCCTTAATG 414 * ** * ** * ** * * ** consensus_9265#0 AATACA-GCCAGAGTTCTCCAAAGACTTCTCG-AAATCAATTTTTGGAATAAGG--AAAC 643 consensus_9265#1 AA------CCAGTGTATACCGCGTGGAGCC---GAATCATTTGTTGAAGTGTTTCCAAAC 609 consensus_9265#2 GGTCCACATCATTGCTTATTTCCTGGATCTTATGTATTATTTTTTTC-GTATGGG-CATC 472 ** * * ** * ** ** * * * consensus_9265#0 AAGTGCTAAGTGGATTTTGTCAATTACTTCCATTAATGGTGCACTCAATGAATCTGCTGT 703 consensus_9265#1 AAG-----AATGTTTGTTGTCACTT-----CATGAAAGTATAAGGCCTGGAGTATGGTAC 659 consensus_9265#2 AAG------ACAGTTGTCGTTAGTTCTATCCAAAAGGATAGCAGCAAATGGCCATAATAT 526 *** * * ** * ** ** * * * * * consensus_9265#0 ATCAGATGTGATTAATAAGGAAATTTTACATCTGATCAACGGAAACTTTATGTGTAAAGA 763 consensus_9265#1 ATT-GATAATGTAAATAGATGGATTG---ATGGAATCATTTG----TTGAAGTGTTTCCA 711 consensus_9265#2 AGGTGACATTTCAGAGGGTAC--------------------------------------- 547 * ** * consensus_9265#0 ATGCAAAAATCTTGGTTGTCCAGCTTGTATCCATACAAAGGTCCAAAAGGCAGCAAAAAT 823 consensus_9265#1 AAACAAGAATGTTTGTTGTC-ACTTCATGAAAGTATAA-GGCCTGGAGTATGGTACAT-T 768 consensus_9265#2 ------------------------------------------------------------ consensus_9265#0 ACTTAGTCGAGCTGTCATATGGGCGGCCACGTCAAAACTGAAACTAGACTCTGAACAACT 883 consensus_9265#1 GATAATGTAAATAGATGGATTGATGGAATTCAGAAGAATGAGTCTCATCTTGATGTCGAT 828 consensus_9265#2 ------------------------------------------------------------ consensus_9265#0 TAGTCGAGCCTTAAACTGGTCCATAGGTCACTGGGTTTCTGATGCTGGTGATAGTCCTCA 943 consensus_9265#1 T-GTGGAA----AAGCCAGT--AAAACCAGTTGCACATCTAA--CAAAAGAAAGTCCG-A 878 consensus_9265#2 ------------------------------------------------------------ consensus_9265#0 ATCTCTATCTGGGGAGGAAGTTGTGAATAAGTTGAATTCTAGTTTGAAGTGTGGAATATT 1003 consensus_9265#1 ATTTCTAT---GGGATCATTTTGATGCTTG------------------------------ 905 consensus_9265#2 ------------------------------------------------------------ consensus_9265#0 TAGTTCAGGTGATAACATAATTTATGATAATACACGGGAGGGTATTTCCAAGCTTGAAGA 1063 consensus_9265#1 ------------------------------------------------------------ consensus_9265#2 ------------------------------------------------------------ consensus_9265#0 GATTCTCCACAATTCATCGAACATTAAGGGCTCCTTG 1100 consensus_9265#1 ------------------------------------- consensus_9265#2 ------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||