These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9273#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 576 fasta sequence [ATAATATTCTAGGTCGCTAACTGGTCATAGCGCT-ACCTGGGATACAATGACGGGGATTAGGACCGTAATTCTTGTTTCATTAGCTGGATCCGTTTCTTTCACATTCTTACTCTTAGCCTGCGCGCTACCGCAATACAAGTAACATAATTAATTGGGAGTTTAATCGTGTTTAGTGTTTGGTGGCCACTATTCATGCTGATATTTTACATAATAGCACCAATTCCATTGTTGGTTGCTAAAAATTTCCAGGAAAGCCCTTCGTTGGGGGATGTGAGTGTTTTCCTGACCACAATCATAATAGTATCAGCATATGCACTGCCTATATTGTTTGCTCGAGCACTTAAAGAAAATCCTC-TATATATTTTCAAAGCAAAGAGTTATTCGCTTCTTGTAGATATTATGGGGTGCTTGTGGACTTACGTTATCAGCAAATACACTTATGTTTGCAACCATCTTTTTCCTAGTTTATCTGGTAGTCAAGTCTGATGATTTCGACAGTGGATTTTGATTTCGAACAGTAAATATCTCCCAAATTTTGATTCAATTTTAATGTAGTAACTGTATTATCTTCTGGAA] [+] EMBL CD091701 [ATAATATTCTAGGTCGCTAACTGGTCATAGCGCTCACCTGGGATACAATGACGGGGATTAGGACCGTAATTCTTGTTTCATTAGCTGGATCCGTTTCTTTCACATTCTTACTCTTAGCCTGCGCGCTACCGCAATACAAGTAACATAATTAATTGGGAGTTTAATCGCGTTTAGTGTTTGGTGGCCACTATTCATGCTGATATCTTACATAATAGCACCAATTCCATTGTTGGTTGCTAAAAATTTCCACGAAAGCCCTTCGTTGGGGGATGa ] [-] EMBL CD091676 [ ATATTCTAGGTCGTTAACTGGTCATAGCGCT ACTTGGGATACAATGACGGGGATTAGGACCGTAATTCTTGTTTCACTAGCTGGATCCGTTTCTTTCACATTCTTACTCTTAGCCTGCGCGCTACCGCAATACAAGTAACATAATTAATTGGGAGTTTAATCGTGTTTAGTGTTTGGTGGCCACTATTCATGCTGATATTTTACATAATAGCACCAATTCCATTGTTGGTTGCTAAAAATTTCCAGGAAAGCCCTTCGTTGGGGGATGTGAGTGTTTTCCTGACCACAATCATAATAGTATCAGCATATGCACTGCCTATATTGTTTGCTCGAGCACTTAAAGAAAATCCTC TATATAT ] [+] EMBL CD083320 [ aggGTTTCTTTCACATTCTTACTCTTAGCCTGCGCGCTACCGCAATACAAGTAACATAATTAATTGGGAGTTTAATCGTGTTTAGTGTTTGGTGGCCACTATTCATGCTGATATTTTACATAATAGCACCAATTCCATTGTTGGTTGCTAAAAATTTCCAGGAAAGCCCTTCGTTGGGGGATGTGAGTGTTTTCCTGACCACAATCATAATAGTATCAGCATATGCACTGCCTATATTGTTTGCTCGAGCACCTAAAGAAAATCCTCTTGTA AGTTTCAAAGCAAAGAGTTATTCGCTTCTTGTAGATATTATGGGGTGCTTGTGGACTTACGTTATCAGCAAATACACTTATGTTTGCAACCATCTTTTTCCTAGTTTATCTGGTAGTCAAGTCTGATGATTTCGACAGTGGATTTTGATTTCGAACAGTAAATATCTCCCAAATTTTGATTCAATTTTAATGTAGTAACTGTATTATCTTCTGGAA] consensusID : consensus_9273#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 396 fasta sequence [CGGGTTTTATAATATTCTAGGTCGTTAACTGGTCATAGCGCTACCTGGGATACAATGACGGGGATTAGGACCGTAATTCTTGTTTCACTAGCTGGATCCGTTTCTTTCACATTCTTACTCTTAGCCTGCGCGCTACCGCAATACAATGTTTGGTGGCCACTATTCATGCTGATATTTTACATAATAGCACCAATTCCATTGTTGGTTGCTAAAAATTTCCAGGAAAGCCCTTCGTTGGGGGATGTGAGTGTTTTCCTGACCACAATCATAATAGTATCAGCATATGCACTGCCTATATTGTTTGCTCGAGCACCTAAAGAAAATCCTCTTATATTATGGGGTGCTTGTGGACTTACGTTATCAGCAAATACACTTATGTTTGCAACCATCTTTTTC] [+] EMBL CD111395 [CGGGTTTTATAATATTCTAGGTCGTTAACTGGTCATAGCGCTACCTGGGATACAATGACGGGGATTAGGACCGTAATTCTTGTTTCACTAGCTGGATCCGTTTCTTTCACATTCTTACTCTTAGCCTGCGCGCTACCGCAATACAATGTTTGGTGGCCACTATTCATGCTGATATTTTACATAATAGCACCAATTCCATTGTTGGTTGCTAAAAATTTCCAGGAAAGCCCTTCGTTGGGGGATGTGAGTGTTTTCCTGACCACAATCATAATAGTATCAGCATATGCACTGCCTATATTGTTTGCTCGAGCACCTAAAGAAAATCCTCTTATATTATGGGGTGCTTGTGGACTTACGTTATCAGCAAATACACTTATGTTTGCAA ] [+] EMBL CD163008 [ GGGTTTTATAATATTCTAGGTCGTTAACTGGTCATAGCGCTACCTGGGATACAATGACGGGGATTAGGACCGTAATTCTTGTTTCACTAGCTGGATCCGTTTCTTTCACATTCTTACTCTTAGCCTGCGCGCTACCGCAATACAATGTTTGGTGGCCACTATTCATGCTGATATTTTACATAATAGCACCAATTCCATTGTTGGTTGCTAAAAATTTCCAGGAAAGCCCTTCGTTGGGGGATGTGAGTGTTTTCCTGACCACAATCATAATAGTATCAGCATATGCACTGCCTATATTGTTTGCTCGAGCACCTAAAGAAAATCCTCTTATATTAGGGGGTGCTTGTGGACTTACGTTATCAGCAAATACACTTATGTTTGCAACCATCTTTTT ] [-] EMBL CD111024 [ gtTTTTATAATATTCTAGGTCGTTAACTGGTCATAGCGCTACCTGGGATACAATGACGGGGATTAGGACCGTAATTCTTGTTTCACTAGCTGGATCCGTTTCTTTCACATTCTTACTCTTAGCCTGCGCGCTACCGCAATACTATGTTTGGTGGCCACTATTCATGCTGATATTTTACATAATAGCACCAATTCCATTGTTGGTTGCTAAAAATTTCCAGGAAAGCCCTTCGTTGGGGGATGTGAGTGTTTTCCTGACCACAATCATAATAGTATCAGCATATGCACTGCCTATATTGTTTGCTCGAGCACCTAAAGAAAATCCTCTTATATTATGGGGTGCTTGTGGACTTACGTTATCAGCAAATACACTTATGTTTGCAAC ] [-] EMBL CD092845 [ ATATTCTAGGTCGTTAACTGGTCATAGCGCTACCTGGGATACAATGACGGGGATTAGGGCCGTAATTCTTGTTTCACTAGCTGGATCCGTTTCTTTCACATTCTTACTCTTAGCCTGCGCGCTACCGCAATACAATGTTTGGTGGCCACTATTCATGCTGATATTTTACATAATAGCACCAATTCCATTGTTGGTTGCTAAAAATTTCCAGGAAAGCCCTTCGTTGGGGGATGTGAGTGTTTTCCTGACCACAATCATAATAGTATCAGCATATGCACTGCCTATATTGTTTGCTCGAGCACCTAAAGAAAATCCTCTTATATTATGGGGTGCTTGTGGACTTACGTTATCAGCAAATACACTTATGTTTGCAACCATCTTTTTC] [-] EMBL CD181038 [ aGTCATAGCAATACATAGGATACAATGACGGGGATTAGGACCGTAATTCTTGTTTCAATAGCTGGATCCGTTTCTTTCACATTCTGACTGTTAGCCTGCGCGGTACCGCAATACAATGTTTGGTGGCCACTATTCATGCTGATATTTTACATAATAGCACCAATTCCATTGTTGGTTGCTAAAAATTTCCAGGAAAGCCCTTCGTTGGGGGATGTGAGTGTTTTCCTGACCACAATCATAATAGTATCAGCATATGCACTGCCTATATTGTTTGCTCGAGCACCTAAAGAAAATCCTCTTATATTATGGGGTGCTTGTGGACTTACGTTATCAGCAAATACACTTATGTTTGCAACCATCTTTTTC] consensusID : consensus_9273#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 329 fasta sequence [TTGTTTCACTAGCTGGATCCGTTTCTTTCACAGTCTTACTCATAGCCGGCGCGCTACCGCAATACAAGTAACATAATTAATTGGGAGTTTAATCGTGTTTAGTGTTTGGTGGCCACTATTCACGCTGATATTTTACATAATAGCACCAATTCCATTGTTGGTTGCTAAAAATTTCCAGGAAAGCCCTTCGTTGGGGGATGTGAGTGTTTTCCTGACCACAATCATAATAGTATCAGCATATGCACTGCCTATAATGTAAGCTCGAGCACATAAAGAAGATCCTTTTATATTATGGGGTGCTTGTGGACTAACGTTATCAGCAAAGACAC] [-] EMBL CD091758 [TTGTTTCACTAGCTGGATCCGTTTCTTTCACAGTCTTACTCATAGCCGGCGCGCTACCGCAATACAAGTAACATAATTAATTGGGAGTTTAATCGTGTTTAGTGTTTGGTGGCCACTATTCACGCTGATATTTTACATAATAGCACCAATTCCATTGTTGGTTGCTAAAAATTTCCAGGAAAGCCCTTCGTTGGGGGATGTGAGTGTTTTCCTGACCACAATCATAATAGTATCAGCATATGCACTGCCTATAATGTAAGCTCGAGCACATAAAGAAGATCCTTTTATATTATGGGGTGCTTGTGGACTAACGTTATCAGCAAAGACAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9273#0 --------ATAATATTCTAGGTCGCTAACTGGTCATAGCGCTACCTGGGATACAATGACG 52 consensus_9273#1 CGGGTTTTATAATATTCTAGGTCGTTAACTGGTCATAGCGCTACCTGGGATACAATGACG 60 consensus_9273#2 ------------------------------------------------------------ consensus_9273#0 GGGATTAGGACCGTAATTCTTGTTTCATTAGCTGGATCCGTTTCTTTCACATTCTTACTC 112 consensus_9273#1 GGGATTAGGACCGTAATTCTTGTTTCACTAGCTGGATCCGTTTCTTTCACATTCTTACTC 120 consensus_9273#2 -------------------TTGTTTCACTAGCTGGATCCGTTTCTTTCACAGTCTTACTC 41 ******** *********************** ******** consensus_9273#0 TTAGCCTGCGCGCTACCGCAATACAAGTAACATAATTAATTGGGAGTTTAATCGTGTTTA 172 consensus_9273#1 TTAGCCTGCGCGCTACCGCAATACAA---------------------------------- 146 consensus_9273#2 ATAGCCGGCGCGCTACCGCAATACAAGTAACATAATTAATTGGGAGTTTAATCGTGTTTA 101 ***** ******************* consensus_9273#0 GTGTTTGGTGGCCACTATTCATGCTGATATTTTACATAATAGCACCAATTCCATTGTTGG 232 consensus_9273#1 -TGTTTGGTGGCCACTATTCATGCTGATATTTTACATAATAGCACCAATTCCATTGTTGG 205 consensus_9273#2 GTGTTTGGTGGCCACTATTCACGCTGATATTTTACATAATAGCACCAATTCCATTGTTGG 161 ******************** ************************************** consensus_9273#0 TTGCTAAAAATTTCCAGGAAAGCCCTTCGTTGGGGGATGTGAGTGTTTTCCTGACCACAA 292 consensus_9273#1 TTGCTAAAAATTTCCAGGAAAGCCCTTCGTTGGGGGATGTGAGTGTTTTCCTGACCACAA 265 consensus_9273#2 TTGCTAAAAATTTCCAGGAAAGCCCTTCGTTGGGGGATGTGAGTGTTTTCCTGACCACAA 221 ************************************************************ consensus_9273#0 TCATAATAGTATCAGCATATGCACTGCCTATATTGTTTGCTCGAGCACTTAAAGAAAATC 352 consensus_9273#1 TCATAATAGTATCAGCATATGCACTGCCTATATTGTTTGCTCGAGCACCTAAAGAAAATC 325 consensus_9273#2 TCATAATAGTATCAGCATATGCACTGCCTATAATGTAAGCTCGAGCACATAAAGAAGATC 281 ******************************** *** ********** ******* *** consensus_9273#0 CTCTATATATTTTCAAAGCAAAGAGTTATTCGCTTCTTGTAGATATTATGGGGTGCTTGT 412 consensus_9273#1 CTCTT-------------------------------------ATATTATGGGGTGCTTGT 348 consensus_9273#2 CTTTT-------------------------------------ATATTATGGGGTGCTTGT 304 ** * ****************** consensus_9273#0 GGACTTACGTTATCAGCAAATACACTTATGTTTGCAACCATCTTTTTCCTAGTTTATCTG 472 consensus_9273#1 GGACTTACGTTATCAGCAAATACACTTATGTTTGCAACCATCTTTTTC------------ 396 consensus_9273#2 GGACTAACGTTATCAGCAAAGACAC----------------------------------- 329 ***** ************** **** consensus_9273#0 GTAGTCAAGTCTGATGATTTCGACAGTGGATTTTGATTTCGAACAGTAAATATCTCCCAA 532 consensus_9273#1 ------------------------------------------------------------ consensus_9273#2 ------------------------------------------------------------ consensus_9273#0 ATTTTGATTCAATTTTAATGTAGTAACTGTATTATCTTCTGGAA 576 consensus_9273#1 -------------------------------------------- consensus_9273#2 -------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||