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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9276#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 1222 fasta sequence
[AATGGACATTTTGAATCATATTTCCACATAAACCATGCATCTGAGCTTGCTGAGCACTAGGTAGTACACAGTTTGACATCACAGTGCTTTGAGGTTGATAGCGTGGATCATGCTGAAATATATCGGAGCAATATATAGTTTGTAAATGCGGATTGATAGACGAATATTCAGCAGGAATACGTGTGCTATATTCTATGGAGGGTCGGAAATGTGTTACAGAAACTGGATGCACGCCGAGACTGACCCGTTGAGAGTCCGCCTTTTGTTGATTAAACGTGCTGATACCGGTTATTTTAGTGCAAACCTGATCTTGAGTTGCAGTTACGTCTCTACAGTCCGCTGCAGATTCATGTAGTTGAGTAACCTCATGTACATTCTCTGGGATGCTTAACTTTGTAACCGCTACATCTTTAACGTCGATAGAACCACACGACTCTTTAGTGCGTACAGGAGATGGGACCCGCAGTGTTTTTTTATCGGTAGATGAATCAATGTCAGATACATTTTGTCGGACAGCAGAATACCGTTTTGGAACTCTTTCTCCACGTCTTACTTGTTCACGGATGTGACTTGAGTGCTTTATTACCCGAGGTTTGTAAACTCTGCTACTTTTTGTGTTTACTGGAGCCACG-TTAATAACCTGTTTCTTATGAACATAT-TGATGGTTTGAGACTGGGTGGTTTGACGAGTCTCCTCTATTTCTTCTGGGAAGATTGAAGCTGGATGTGTAGTACGAATGGTTTGAACCCTGTTGATGTTTATGATGTGAGTCATATGTGCTAGTTGGATAGACAGGCTTCGTATCAAGAGTTTGAGTAGGGTGACTACGACGCACATTGGGACCAGATACATAATCTTCTTTTATGAGCCTTGAAGAAACCTGAGTTTGAAACTCGTCCGTAACTGAATCTTTCCGTGTGGAAAAATTGCGTTCATGGCAGTCACTCTTTGAAAAGCGACCATAACCACTGTACCTAATGCTGGAGTATGTGATGCTTTTTCCTTGGGTTCCAGTAGAACTTTTTTGGCTTTCGTTACCGCATAACACACTGCTTCGCACTTTAGTACCGGTTACTTGACTCGGTTGATGTGAAGAATGGTATGTCTTATTAGTCTCGACGGGAATGGAGGTTGTCATAGGGACGTTACTTCGATTATTAGATTCAGACCTGTTGTCAGATGGGCATATGTTTTCTTTACGAATATCGTACCCATACCTCCA]
[-] EMBL CD146193 [AATGGACATTTTGAATCATATTTCCACATAAACCATGCATCTGAGCTTGCTGAGCACTAGGTAGTACACAGTTTGACATCACAGTGCTTTGAGGTTGATAGCGTGGATCATGCTGAAATATATCGGAGCAATATATAGTTTGTAAATGCGGATTGATAGACGAATATTCAGCAGGAATACGTGTGCTATATTCTATGGAGGGTTGGAAATGTGTTACAGAAACCGGATGCACGCCGAGACTGACCCGTTGAGAGTCCGCTTTTTGTTGATTAAACGTGCTGATACCGGTTATTTTAGTGCAAACCTGATCTTGAGTTGCAGTTACGTCTCTACAGTCCGCTGCAGATTCATGTAGTTGAGTAACCTCATGTACATTCTCTGGGATGCTTAACTTTGTAACCGCTACATCTTTAACGTCGATAGAACCACACGACT ]
[-] EMBL BG931472 [ TCGGAAATGTGTTACAGAAACTGGATGCACGCCGAGACTGACCCGTTGAGAGTCCGCCTTTTGTTGATTAAACGTGCTGATACCGGTTATTTTAGTGCAAACCTGATCTTGAGTCGCAGTTACGTCTCTACAGTCCGCTGCAGATTCATGTAGTTGAGCAACATCATGTACATTCTCTGGGATGCTTAACTTTGTAACCGCTACATCTCTAACGTCGATAGAACCACACGACTCTTTAGTGCGTACAGGAGATGGGAC ]
[-] EMBL BG931464 [ TCGGAAATGTGTTACAGAAACTGGATGCACGCCGAGACTGACCCGTTGAGAGTCCGCCTTTTGTTGATTAAACGTGCTGATACCGGTTATTTTAGTGCAAACCTGATCTTGAGTTGCAGTTACGTCTCTACAGTCCGCTGCAGATTCATGTAGTTGAGTAACCTCATGTACATTCTCTGGGATGCTTAACTTTGTAACCGCTACATCTTTAACGTCGATAGAACCACACGACTCTTTAGTGCGTACAGGAGATGGGAC ]
[-] EMBL CD114812 [ TCTCTGGGATGCTTAACTTTGTAACCGCTACATCTTTAACGTCGATAGAACCACACGACTCTTTAGTGCGTACAGGAGATGGGAGCCGCAGTGTTTTTTTATCGGTAGATGAATCAATGTCAGATACATTTTGTCGGACAGCAGAATACCGTTTTGGAACTCTTTCTCCACGTCTTACTTGTTCACGGATGTGACTTGAGTGCTTTATTACCCGAGGTTTGTAAACTCTGCTACTTTTTGTGTTTACTGGAGCCACG TTAATAACCTGTTTCTTATGAACATAT TGATGGTTTGAGACTGGGTGGTTTGACGAGTCTCCTCTATTTCTTCTGGGAAGATTGAAGCTGGATGTGTAGTACGAATGGTTTGAACCCTGTTGATGTTTATGATGTGAGTCATATGTGCTAGTTGGATAGACAGGCTTCGTATCAAGAGTTTGAGTAGGGTGACTACGACGCACATTGGGACCAGATACATAATCT ]
[+] EMBL CD156268 [ GTCGATAGAACCACACGACTCTTTAGTGCGTACAGGAGATGGGAGCCGCAGTGTTTTTTTATCGGTAGATGAATCAATGTTAGATACATTTTGTCGGACAGCAGAATACCGTTTTGGAACTCTTTCTCCACGTCTTACTTGTTCACGGATGTGACTTGAGTGCTTTATTACCCGAGGTTTGTAAACTCTGCTACTTTTTGTGTTTACTGGAGCCACG TTAATAACCTGTTTCTTATGAACATAT TGATGGTTTGAGACTGGGTGGTTTGACGAGTCTCCTCTATTTCTTCTGGGAAGATTGAAGCTGGATGTGTAGTATGAATGGTTTGAACCCTGTTGATGTTTATGATGTGAGTCATATGTGCTAGTTGGATAGACAGGCTTCGTATCAAGAGTTTGAGTAGGGTGACTACGACGCACATTGGGACCAGATACATAATCTTCTTTTATGAGCCTTGAAGAAACCTGAGTTTGAAACTCGTCCGTAACTGAATCTTTCCGTGTGGAAAAATTGCGTTCATGGCAGTCACTCTTTGAAAAGCGACCATAACCACTGTACCTAATGCTGGAGTATGTGATGCTTTTTCCTTGGGTTCCAGTAGAACTTTTTTGGCTTT ]
[-] EMBL CD181327 [ TGTGNTTACT GAG CACGTTTTATAACCTGTTTC TATG ACATATGNNAT GTTTGAGACTGGGT GTTTGACGAGTCTCTNCTATTTCTTCTGGGAAGATTGAAGCTGGATGTGTAGTACGAATGGTTTGAACCCTGTTGATGTTTATGATGTGAGTCATATGTGCTAGTTGGATAGACAGGCTTCGTATCAAGAGTTTGAGTAGGGTGACTACGACGCACATTGGGACCAGATACATAATCTTCTTTTATGAGCCTTGAAGAAACCTGAGTTTGAAACTCGTCCGTAACTGAATCTTTCCGTGTGGAAAAATTGCGTTCATGGCAGTCACTCTTTGAAAAGCGACCATAACCACTGTACCTAATGCTGGAGTATGTGATGCTTTTTCCTTGGGTTCCAGTAGAACTTTTTTGGCTTTCGTTACCGCATAACACACTGCTTCGCACTTTAGTACCGG ]
[+] EMBL CD202410 [ ATGATGAGAGTCATATGCGCTAGTGGGATACACACGCTTCGTATCAAGAGTTTGAGTAGGGAGTCTACCACGCACTTTGGGACCAGACACATAATCTTCTTTTATGAGCCTGGAAAAAACCTGAGTTGGAAACTCGTCCGTAACTGAATCTTTCCGTGTGGAAAAATGGCGTTCATGGCAGTCACTCTTTGAAAAGCGACCATAACCACTGTACCTAATGCTGGAGTATGTGATGCTTTTTCCTTGGGTTCCAGTAGAACTTTTTTGGCTTTCGTTACCGCATAACACACTGCTTCGCACTTTAGTACCGGTTACTTGACTCGGTTGATGTGAAGAATGGTATGTCTTATTAGTCTCGACGGGAATGGAGGTTGTCATAGGGACGTTAC ]
[-] EMBL CD140703 [ GTGACTACGACGCACATTGGGACCAGATACATAATCTTCTTTTATGAGCCTTGAAGAAACCTGAGTTTGAAACTCGTCCGTAACTGAATCTTTCCGTGTGGAAAAATTTCGTTCATGGCAGTCACTCTTTGAAAAGCGACCATAACCACTGTACCTAATGCTGGAGTATGTGATGCTTTTTCCTTGGGTTCCAGTAGAGCTTTTTTGGCTTTCGTTACCGCATAACACACTGCTTCGCACTTTAGTACCGGTTACTTGACTCGGTTGATGTGAAGAATGGTATGTCTTATTAGTCTCGACGGGAATGGAGGTTGTCATAGGGACGTTACTTCGATTATTAGATTCAGACCTGTTGTCAGATGGGCATATGTTTTCTTTACGAATATCGTACCCATACCTCCA]
consensusID : consensus_9276#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 478 fasta sequence
[CTTTTGTTGATTAAACGTGCTGATACCGGTATTTTAGTGCAAACCTGATCTTGAGTTGCAGTACGTCTCTACAGTCCGCTGCAGAATCATGTAGTTGAGTAACCTCATGTACAATCTCTGGGATGCTTAACTTTGTAACCGCTACATCTTTAACGTCGATAGAACCACACGACTCTTTAGTGCGTACAGGAGATGGGAGCCGCAGTGTTTTTTTATCGGTAGATGAATCAATGTTAGATACATTTGTCGGACAGCAGAATACCGTTTTGGAACTCTTTCTCCACGTCTTACTTGTTCACGGATGTGACTTGAGTGCTTTATTACCCGAGGTTTGTAAACTCTGCTACCTTTTGTGTTTACTGGAGCCACGTTAATAACCTTTTTCTTATGAACATATTGATGGTTTGAGACTGGGTGGTTTGACGAGTCTCCTCTATTCCTTCTGGGAAGATTGAAGCTGGATGTGNTAACGTGCCGA]
[-] EMBL AW061392 [CTTTTGTTGATTAAACGTGCTGATACCGGTATTTTAGTGCAAACCTGATCTTGAGTTGCAGTACGTCTCTACAGTCCGCTGCAGAATCATGTAGTTGAGTAACCTCATGTACAATCTCTGGGATGCTTAACTTTGTAACCGCTACATCTTTAACGTCGATAGAACCACACGACTCTTTAGTGCGTACAGGAGATGGGAGCCGCAGTGTTTTTTTATCGGTAGATGAATCAATGTTAGATACATTTGTCGGACAGCAGAATACCGTTTTGGAACTCTTTCTCCACGTCTTACTTGTTCACGGATGTGACTTGAGTGCTTTATTACCCGAGGTTTGTAAACTCTGCTACCTTTTGTGTTTACTGGAGCCACGTTAATAACCTTTTTCTTATGAACATATTGATGGTTTGAGACTGGGTGGTTTGACGAGTCTCCTCTATTCCTTCTGGGAAGATTGAAGCTGGATGTGNTAACGTGCCGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9276#0 AATGGACATTTTGAATCATATTTCCACATAAACCATGCATCTGAGCTTGCTGAGCACTAG 60
consensus_9276#1 ------------------------------------------------------------
consensus_9276#0 GTAGTACACAGTTTGACATCACAGTGCTTTGAGGTTGATAGCGTGGATCATGCTGAAATA 120
consensus_9276#1 ------------------------------------------------------------
consensus_9276#0 TATCGGAGCAATATATAGTTTGTAAATGCGGATTGATAGACGAATATTCAGCAGGAATAC 180
consensus_9276#1 ------------------------------------------------------------
consensus_9276#0 GTGTGCTATATTCTATGGAGGGTCGGAAATGTGTTACAGAAACTGGATGCACGCCGAGAC 240
consensus_9276#1 ------------------------------------------------------------
consensus_9276#0 TGACCCGTTGAGAGTCCGCCTTTTGTTGATTAAACGTGCTGATACCGGTTATTTTAGTGC 300
consensus_9276#1 -------------------CTTTTGTTGATTAAACGTGCTGATACCGGT-ATTTTAGTGC 40
****************************** **********
consensus_9276#0 AAACCTGATCTTGAGTTGCAGTTACGTCTCTACAGTCCGCTGCAGATTCATGTAGTTGAG 360
consensus_9276#1 AAACCTGATCTTGAGTTGCAGT-ACGTCTCTACAGTCCGCTGCAGAATCATGTAGTTGAG 99
********************** *********************** *************
consensus_9276#0 TAACCTCATGTACATTCTCTGGGATGCTTAACTTTGTAACCGCTACATCTTTAACGTCGA 420
consensus_9276#1 TAACCTCATGTACAATCTCTGGGATGCTTAACTTTGTAACCGCTACATCTTTAACGTCGA 159
************** *********************************************
consensus_9276#0 TAGAACCACACGACTCTTTAGTGCGTACAGGAGATGGGACCCGCAGTGTTTTTTTATCGG 480
consensus_9276#1 TAGAACCACACGACTCTTTAGTGCGTACAGGAGATGGGAGCCGCAGTGTTTTTTTATCGG 219
*************************************** ********************
consensus_9276#0 TAGATGAATCAATGTCAGATACATTTTGTCGGACAGCAGAATACCGTTTTGGAACTCTTT 540
consensus_9276#1 TAGATGAATCAATGTTAGATACATTT-GTCGGACAGCAGAATACCGTTTTGGAACTCTTT 278
*************** ********** *********************************
consensus_9276#0 CTCCACGTCTTACTTGTTCACGGATGTGACTTGAGTGCTTTATTACCCGAGGTTTGTAAA 600
consensus_9276#1 CTCCACGTCTTACTTGTTCACGGATGTGACTTGAGTGCTTTATTACCCGAGGTTTGTAAA 338
************************************************************
consensus_9276#0 CTCTGCTACTTTTTGTGTTTACTGGAGCCACGTTAATAACCTGTTTCTTATGAACATATT 660
consensus_9276#1 CTCTGCTACCTTTTGTGTTTACTGGAGCCACGTTAATAACCTTTTTCTTATGAACATATT 398
********* ******************************** *****************
consensus_9276#0 GATGGTTTGAGACTGGGTGGTTTGACGAGTCTCCTCTATTTCTTCTGGGAAGATTGAAGC 720
consensus_9276#1 GATGGTTTGAGACTGGGTGGTTTGACGAGTCTCCTCTATTCCTTCTGGGAAGATTGAAGC 458
**************************************** *******************
consensus_9276#0 TGGATGTGTAGTACGAATGGTTTGAACCCTGTTGATGTTTATGATGTGAGTCATATGTGC 780
consensus_9276#1 TGGATGTGNTA-ACGTGCCGA--------------------------------------- 478
******** *** *
consensus_9276#0 TAGTTGGATAGACAGGCTTCGTATCAAGAGTTTGAGTAGGGTGACTACGACGCACATTGG 840
consensus_9276#1 ------------------------------------------------------------
consensus_9276#0 GACCAGATACATAATCTTCTTTTATGAGCCTTGAAGAAACCTGAGTTTGAAACTCGTCCG 900
consensus_9276#1 ------------------------------------------------------------
consensus_9276#0 TAACTGAATCTTTCCGTGTGGAAAAATTGCGTTCATGGCAGTCACTCTTTGAAAAGCGAC 960
consensus_9276#1 ------------------------------------------------------------
consensus_9276#0 CATAACCACTGTACCTAATGCTGGAGTATGTGATGCTTTTTCCTTGGGTTCCAGTAGAAC 1020
consensus_9276#1 ------------------------------------------------------------
consensus_9276#0 TTTTTTGGCTTTCGTTACCGCATAACACACTGCTTCGCACTTTAGTACCGGTTACTTGAC 1080
consensus_9276#1 ------------------------------------------------------------
consensus_9276#0 TCGGTTGATGTGAAGAATGGTATGTCTTATTAGTCTCGACGGGAATGGAGGTTGTCATAG 1140
consensus_9276#1 ------------------------------------------------------------
consensus_9276#0 GGACGTTACTTCGATTATTAGATTCAGACCTGTTGTCAGATGGGCATATGTTTTCTTTAC 1200
consensus_9276#1 ------------------------------------------------------------
consensus_9276#0 GAATATCGTACCCATACCTCCA 1222
consensus_9276#1 ----------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||