These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9295#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 1353 fasta sequence [GAGATCTAGCTAATATTTTATGGTTAAAAAGTCACAGTTCTGAAGCATGGTTTGAGCGTAGAACGAATTTTACACGATCTATGGCTACCATGTCTATGGTTGGTTATATTTTGGGGTTAGGAGATAGGCATCCATCGAATATAATGTTGTCTCGAGTGACAGGCAAAGTGGTGCATATTGA-TTTGGTGATTGCTTTGAAGTGGCTACAATGAGAGAAAAATTCCCAGAGAAAGTACCATTTCGGTTAACACGTATGATTATTTCTGCTATGGAGGTGACAGGAATAGATGGTGTTTATCGCCATACCTGTGAAATGGTTATGTCTCTTTTACGTTCCAATCGTGAAAGTCTTCTTGCAGTTTTAGAAGCATTTATTCATGATCCATTGTTACAGTGGGTACTCCATGAAAACCGTAAAGAATTTAATCACTTAGAGAATAAGCTAGACGACGGAGGTGGTGGCGGCGGCGGTATAGCTCCAGCAATTGGAACAAACTGTTTGGCAAATGGTACTGGTGGCGGTGTTCATGGTGTAACAACTGCTAATAATCAGTCAGTACAGTTGAAACCTGGTGCACGCAATTCAGATTATCCACATAGACAAGTGTATGCTCATCAACAGCATCATGCTGTTCAAAATACACTTCGACGTCCAACAGACAAAAGTAATAATTTAACCTCAGGTCAACAGAATTCACAAGGACATTTTCAACAGCAAAATTTGAATAGAAGAGCTAATTCGCCGAACAGGGTGTTTACAAATCCAAATCATCCAGACAGTGCTTCATTGCGTGATCCACAAAAGGTGAATCAATGGCGTCATCATTTGTGTAATGGACCTTGGTTTGGTTGTTATGAAACTGCTAAACGTTTAAGAAAGCAAATGGAATCCGGTCACATAGTAGTTGAACGTCATGGACTACAAGGGTTCATATTTTCTGCAAAACCTCCAAGCACTGAAGACTCATGTATTGATTCAGAATCCCAGCCTGTTACCTTAGGAAATGTACGTGCACGTTCTGTAATGGAAAGAATTAGGCAAAAATTGACTGGCACTGAGAGAGATCAAGTGATGAGCGTTTCGGCTCAAGTAGACTTCCTTATACGTGAAGCAACTTCAAATCAAAATTTATGCCAGATGTATATAGGCTGGTGTGCTTTCTGGTGATACATTAATTTTATTCAATGATCAATTCATCAATCAGCTATTGTATTTTTCTTTTTACGTTACCAGTGAATTATTTATGAAAGTGTAAATTTACTTTATCAGTTAACAAACTGGTTTTCATCTAAAACATTGTACATTTTTGTTGATTAAAAATACTTTCTTATTTAAA--AAAAAAATAAAAAAAA] [+] EMBL CD179996 [GAGATCTAGCTAATATTTTATGGTTAAAAAGTCACAGTTCTGAAGCATGGTTTGAGCGTAGAACGAATTTTACACGATCTATGGCTACCATGTCTATGGTTGGTTATATTTTGGGGTTAGGAGATAGGCATCCATCGAATATAATGTTGTCTCGAGTGACAGGCAAAGTGGTGCATATTGATTTTGGTGATTGCTTTGAAGTGGCTACAATGAGAGAAAAATTCCCAGAGAAAGTACCATTTCGGTTAACACGTATGATTATTTCTGCTATGGAGGTGACAGGAATAGATGGTGTTTATCGCCATACCTGTGAAATGGTTATGTCTCTTTTACGTTCCAATCGTGAAAGTCTTCTTGCAGTTNTAGAAGCATTTATTCATGATCCATTGTTACAGTGGGTACTCCA ] [-] EMBL CD095389 [ AAGCATGGTTTGAGCGTAGAACGAATTTTACACGATCTATGGCTACCATGTCTATGGTTGGTTATATTTTGGGGTTAGGAGATAGGCATCCATCGAATATAATGTTGTCTCGAGTGACAGGCAAAGTGGTGCATATTGA TTTGGTGATTGTTTTGAAGTGGCTACAATGAGAGAAAAATTCCCAGAGAAAGTACCATTTCGGTTAACACGTATGATTATTTCTGCTATGGAGGTGACAGGAATAGATGGTGTTTATCGCCATACCTGTGAAATGGTTATGTCTCTTTTACGTTCCAATCGTGAAAGTCTTCTTGCAGTTTTAGAAGCATTTATTCATGATCCATTGTTACAGTGGGTACTCCATGAAAACCGTAAAGAATTTAATCACTTAGAGAATAAGCTAGACGACGGAGGTGGTGGCGGCGGCGGTATAGCTCCAGCAATTGGAACAAACTGTTTGGCAAATGGTACTGGTGGCGGTGTTCATGGTGTAACAACTGCTAATAATCAGTCAGTACAGTTGAAA ] [-] EMBL CD167001 [ CAGAGAAAGTACCATTTCGGTTAACACGTATGATTATATCTGCTATGGAGGTGACAGGAATAGATGGTGTTTATCGCCATACCTGTGAGATGGTTATGTCTCTTTTACGTTCCAATCGTGAAAGTCTTCTTGCAGTTTTAGAAGCATTTATTCATGATCCATTGTTACAGTGGGTACTCCATGAAAACCGTAAAGAATTTAATCACTTAGAGAATAAGCTAGACGACGGAGGTGGTGTCGGCGGCGGTATAGCTCCAGCAATTGGAACATACTGTTTGGCAAATGGTACTGGTGGCGGTGTTCATGGTGTAACAACTGCTAATAATCAGTCAGTACAGT ] [+] EMBL CD083104 [ GTGGCGGCGGCGGTATAGCTCCAGCAATTGGAACAAACTGTTTGGCAAATGGTACTGGTGGCGGTGTTCATGGTGTAACAACTGCTAATAATCAGTCAGTACAGTTGAAACCTGGTGCACGCAATTCAGATTATCCACATAGACAAGTGTATGCTCATCAACAGCATCATGCTGTTCAAAATACACTTCGACGTCCAACAGACAAAAGTAATAATTTAACCTCAGGTCAACAGAATTCACAAGGACATTTTCAACAGCAAAATTTGAATAGAAGAGCTAATTCGCCGAACAGGGTGTTTACAAATCCAAATCATCCAGACAGTGCTTCATTGCGTGATCCACAAAAGGTGAATCAATGGCGTCATCATTTGTGTAATGGACCTTGGTTTGGTTGTTATGAAACTGCTAAACGTTTAAGAAAGCAAATGGAATCCGGTCACATAGTAGTTGAACGTCATGGACTACAAGGGTTCATATTTTCTGCANAACCTCCAAGCACTGAAGACTCATGTATTGATTCAGAATCCCAGCCTGTTACCTTAGGAAATGTACGTGCACGTTCTG ] [-] EMBL CD146029 [ AAGTGTATGCTCATCAACAGCATCATGCTGTTCAAAATACACTTCGACGTCCAACAGACAAAAGTAATAATTTAACCTCAGGTCAACAGAATTCACAAGGACATTTTCAACAGCAAAATTTGAATAGAAGAGCTAATTCGCCGAACAGGGTGTTTACAAATCCAAATCATCCAGACAGTGCTTCATTGCGTGATCCACAAAAGGTGAATCAATGGCGTCATCATTTGTGTAATGGACCTTGGTTTGGTTGTTATGAAACTGCTAAACGTTTAAGAAAGCAAATGGAATCCGGTCACATAGTAGTTGAACGTCATGGACTACAAGGGTTCATGTTTTCTGCAA ] [-] EMBL CD076678 [ AGTGCTTCATTGCGTGATCCACAAAAGGTGAATCAATGGCGTCATCATTTGTGTAATGGACCTTGGTTTGGTTGTTATGAAACTGCTAAACGTTTAAGAAAGCAAATGGAATCCGGTCACATAGTAGTTGAACGTCATGGACTACAAGGGTTCATATTTTCTGCAAAACCTCCAAGCACTGAAGACTCATGTATTGATTCAGAATCCCAGCCTGTTACCTTAGGAAATGTACGTGCACGTTCTGTAATGGAAAGAATTAGGCAAAAATTGACTGGCACTGAGAGAGATCAAGTGATGAGCGTTTCGGCTCAAGTAGACTTCCTTATACGTGAAGCAACTTCAAATCAAAATTTATGCCAGATGTATATAGGCTGGTGTGCTTTCTGGTGATACATTAATTTTATTCAATGATCAATTCATCAATCAGCTATTGTATTTTTCTTTTTACGTTACCAGTGAATTATTTATGAAAGTGTAAATTTACTTTATCAGTTAACAAACTGGTTTTCATCTAAAACATTGTACATTTTTGTTGATTAAAAATACT ] [-] EMBL AI395235 [ ACGTTTAAGAATGCAAATGGAATCCGGTCACGTAGTAGTTGAACGTCATGGACTACAAGGGCT ATATTTTCTGCAAAACCTCCAAGCACTGAAGACTCATGTATTGATTCAGAATCCCAGCCTGTTACCTTAGGAAATGTACGTGCACGTTCTGTAATGGAAAGAATTAGGCAAAAATTGACTGGCACTGAGAGAGATCAAGTGATGAGCGTTTCGGCTCAAGTAGACTTCCTTATACGTGAAGCAACTTCAAATCAAAATTTATGCCAGATGTATATAGGCTGGTGTGCTTTCTGGTGATACATTAATTTTATTCAATGATCAATTCATCAATCAGCTATTGTATCTTTCATTTTACGTTACCAGTGAATTATTTATGAAAGTGTAAATTTACTTTATCAGTTAACAAACTGGTTTTCATCTAAAACATTGTACATTTTTGTTGATTAAAAATACTTTCTTATTTAAA AAAAAAATAAA ] [-] EMBL AI395662 [ GAATTA GCCAAAATTGACTGGCACTGAGAGAGATCAAGTGATGAGCGTTTCGGCTCAAGTAGACTTCCTTATACGTGAAGCAACTTCAAATCAAAATTTATGCCAGATGTATATAGGCTGGTGTGCTTTCTGGTGATACATTAATTTTATTCAATGATCAATTCATCAATCAGCTATTGTATTTTTCTTTTTACGTTACCAGTGAATTATTTATGAAAGTGTAAATTTACTTTATCAGTTAACAAACTGGTTTTCATCTAAAACATTGTACATTTTTGTTGATTAAAAATACTTTCTTATTTAAAGGAAAAAAAAAAAAAAAA] consensusID : consensus_9295#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 342 fasta sequence [AATAATAATTTGGTAACTAAATTCACCTACATATTTATTTTAGGTGACAGGAATAGATGGTGTTTATCGCCATACCTGTGAAATGGTTATGTCTCTTTTACGTTCCAATCGTGAAAGTCTTCTTGCAGTTTTAGAAGCATTTATTCATGATCCATTGTTACAGTGGGTACTCCATGAAAACCGTAAAGAATTTAATCACTTAGAGAATAAGCTAGACGACGGAGGTGGTGGCGGCGGCGGTATAGCTCCAGCAATTGGAACAAACTGTTTGGCAAATGGTACTGGTGGCGGTGTTCATGGTGTAACAACTGCTAATAATCAGTCAGTACAGTTGAAACCTGG] [+] EMBL CD114917 [AATAATAATTTGGTAACTAAATTCACCTACATATTTATTTTAGGTGACAGGAATAGATGGTGTTTATCGCCATACCTGTGAAATGGTTATGTCTCTTTTACGTTCCAATCGTGAAAGTCTTCTTGCAGTTTTAGAAGCATTTATTCATGATCCATTGTTACAGTGGGTACTCCATGAAAACCGTAAAGAATTTAATCACTTAGAGAATAAGCTAGACGACGGAGGTGGTGGCGGCGGCGGTATAGCTCCAGCAATTGGAACAAACTGTTTGGCAAATGGTACTGGTGGCGGTGTTCATGGTGTAACAACTGCTAATAATCAGTCAGTACAGTTGAAACCTGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9295#0 GAGATCTAGCTAATATTTTATGGTTAAAAAGTCACAGTTCTGAAGCATGGTTTGAGCGTA 60 consensus_9295#1 ------------------------------------------------------------ consensus_9295#0 GAACGAATTTTACACGATCTATGGCTACCATGTCTATGGTTGGTTATATTTTGGGGTTAG 120 consensus_9295#1 ------------------------------------------------------------ consensus_9295#0 GAGATAGGCATCCATCGAATATAATGTTGTCTCGAGTGACAGGCAAAGTGGTGCATATTG 180 consensus_9295#1 ------------------------------------------------------------ consensus_9295#0 ATTTGGTGATTGCTTTGAAGTGGCTACAATGAGAGAAAAATTCCCAGAGAAAGTACCATT 240 consensus_9295#1 ---------------------------------------------------AATAATAAT 9 * ** * * consensus_9295#0 TCGGTTAACACGTATGATTATTTCTGCTATGGAGGTGACAGGAATAGATGGTGTTTATCG 300 consensus_9295#1 TTGGTAACTAAATTCACCTACATATTTATTTTAGGTGACAGGAATAGATGGTGTTTATCG 69 * *** * * * ** * * * **************************** consensus_9295#0 CCATACCTGTGAAATGGTTATGTCTCTTTTACGTTCCAATCGTGAAAGTCTTCTTGCAGT 360 consensus_9295#1 CCATACCTGTGAAATGGTTATGTCTCTTTTACGTTCCAATCGTGAAAGTCTTCTTGCAGT 129 ************************************************************ consensus_9295#0 TTTAGAAGCATTTATTCATGATCCATTGTTACAGTGGGTACTCCATGAAAACCGTAAAGA 420 consensus_9295#1 TTTAGAAGCATTTATTCATGATCCATTGTTACAGTGGGTACTCCATGAAAACCGTAAAGA 189 ************************************************************ consensus_9295#0 ATTTAATCACTTAGAGAATAAGCTAGACGACGGAGGTGGTGGCGGCGGCGGTATAGCTCC 480 consensus_9295#1 ATTTAATCACTTAGAGAATAAGCTAGACGACGGAGGTGGTGGCGGCGGCGGTATAGCTCC 249 ************************************************************ consensus_9295#0 AGCAATTGGAACAAACTGTTTGGCAAATGGTACTGGTGGCGGTGTTCATGGTGTAACAAC 540 consensus_9295#1 AGCAATTGGAACAAACTGTTTGGCAAATGGTACTGGTGGCGGTGTTCATGGTGTAACAAC 309 ************************************************************ consensus_9295#0 TGCTAATAATCAGTCAGTACAGTTGAAACCTGGTGCACGCAATTCAGATTATCCACATAG 600 consensus_9295#1 TGCTAATAATCAGTCAGTACAGTTGAAACCTGG--------------------------- 342 ********************************* consensus_9295#0 ACAAGTGTATGCTCATCAACAGCATCATGCTGTTCAAAATACACTTCGACGTCCAACAGA 660 consensus_9295#1 ------------------------------------------------------------ consensus_9295#0 CAAAAGTAATAATTTAACCTCAGGTCAACAGAATTCACAAGGACATTTTCAACAGCAAAA 720 consensus_9295#1 ------------------------------------------------------------ consensus_9295#0 TTTGAATAGAAGAGCTAATTCGCCGAACAGGGTGTTTACAAATCCAAATCATCCAGACAG 780 consensus_9295#1 ------------------------------------------------------------ consensus_9295#0 TGCTTCATTGCGTGATCCACAAAAGGTGAATCAATGGCGTCATCATTTGTGTAATGGACC 840 consensus_9295#1 ------------------------------------------------------------ consensus_9295#0 TTGGTTTGGTTGTTATGAAACTGCTAAACGTTTAAGAAAGCAAATGGAATCCGGTCACAT 900 consensus_9295#1 ------------------------------------------------------------ consensus_9295#0 AGTAGTTGAACGTCATGGACTACAAGGGTTCATATTTTCTGCAAAACCTCCAAGCACTGA 960 consensus_9295#1 ------------------------------------------------------------ consensus_9295#0 AGACTCATGTATTGATTCAGAATCCCAGCCTGTTACCTTAGGAAATGTACGTGCACGTTC 1020 consensus_9295#1 ------------------------------------------------------------ consensus_9295#0 TGTAATGGAAAGAATTAGGCAAAAATTGACTGGCACTGAGAGAGATCAAGTGATGAGCGT 1080 consensus_9295#1 ------------------------------------------------------------ consensus_9295#0 TTCGGCTCAAGTAGACTTCCTTATACGTGAAGCAACTTCAAATCAAAATTTATGCCAGAT 1140 consensus_9295#1 ------------------------------------------------------------ consensus_9295#0 GTATATAGGCTGGTGTGCTTTCTGGTGATACATTAATTTTATTCAATGATCAATTCATCA 1200 consensus_9295#1 ------------------------------------------------------------ consensus_9295#0 ATCAGCTATTGTATTTTTCTTTTTACGTTACCAGTGAATTATTTATGAAAGTGTAAATTT 1260 consensus_9295#1 ------------------------------------------------------------ consensus_9295#0 ACTTTATCAGTTAACAAACTGGTTTTCATCTAAAACATTGTACATTTTTGTTGATTAAAA 1320 consensus_9295#1 ------------------------------------------------------------ consensus_9295#0 ATACTTTCTTATTTAAAAAAAAAATAAAAAAAA 1353 consensus_9295#1 --------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||