These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9301#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1399 fasta sequence [GAAAAAATAAAACACATTATCTGTCCAAAAAGTATGAAAACGACTCTGTACTGGTCTGTGCATTAGAGAAGTCAGGATTTGACTACTCAATTTTAAGAGTTGCTGTAGGATACAAGAAAGGACTGGTCGGCGTTTATATGTTCAAACCATCAGACATCTCATCAGCTTCAAATCTCACACAGATAGCGAGATNTTACGCACACGAGAGGGATGTTTGTCATGTGGTCTGGAAACCGTGTGCCTCGGGTTATACAGACAACCCAACGGAGCTTCTCACATGTGGACGTGATCAAATGGTCAAGGTATGGAATGTATCCACCTCCGAATGCTGTTTTTGTACCAAAGTTCCTGGTCAGTCACGTTATCATGCAAATGATTCTGGAAAACGTTCAAATCAGAAAAATAATGTTAGCGGAGCCCCATGGATATCTGCTTGTTACACCACAGGGAAGAATTCGATGGTGAATATCTTATTTTCGGGATTACGGGGTGAATTATTCCGTTGGAGCTGGTCAGATGCACCTACTAACATAACACCTGAAAACCAAGGGCATTCTATGCTGATTTTTTCAATGTTGTTTGTTCCTAATTCTCCTGGGCTAGTGATTACAGTCAGCCAAGATAGAGTTCTGATTGTGTGGGAGTTAGTTGAAGAATCGCTCCCGTTAGTTGTTTTGCGACTACCGACACTTTCTGCAGGGGTGTTTTCTCTAGCTCAGTCTTCGTTTAGTAATAGCCCTTTAGTCGCAGGGCTTTCAGATGGATCTATTTTGTTCTGGAAAGTTTATTCACCGAATATGAATGATGGTAACAATTCCTTTGACAATCGAAGTAAGGACAAATCTATTTCAATATCACCTCGGGGATCTCAGTCATCCCCTATAACCGCTCTTGCTTGGCATCCTTTACCGCAATACGAAAACATCCTTGCCTATGGGACCGAATCCGGTTGTGTGGAGATAGTCGATATTAACAAGCTACAGAAAATACAGAATCGGAAGCCGAAACCACAGTTGCACGCGTTTGGTTCGACCGTATACCGAGTTGCTTGGGGGCCTATAATATTTACGGGTTCGCATCACAAAAATGAACAGATAGAAACTAAAAGTCATTTGAAACCTGATAATTCTGCACTCTTATCAAATACAACTGTAGAGGAAAATGTCAGGTGCAATACAGAATCCGAGGCTAAGTTTCCTTTCTATGTTTATAGTGTAAGTAAAGGAAAAATCCACTGTCATTTTGGAGGCGGTCGCCCTCCAGTTGAAGTTAGCATGAAGTTTCCTTCTCCTCCAAATACCACTGGGGAAGATTGGGAAACCCTGATTCGTAGTGATATAGCATTCCGCCCTGTCAGTAAAACTAAACAGTCATCAGCTGATCCAGTTCCTGATACCTT] [+] EMBL CD157649 [GAAAAAATAAAACACATTATCTGTCCAAAAAGTATGAAAACGACTCTGTACTGGTCTGTGCATTAGAGAAGTCAGGATTTGACTACTCAATTTTAAGAGTTGCTGTAGGATACAAGAAAGGACTGGTCGGCGTTTATATGTTCAAACCATCAGACATCTCATCAGCTTCAAATCTCACACAGATAGCGAGATNTTACGC ] [+] EMBL CD195593 [ ACTGGTCGGCGTTTATATGTTCAAACCATCAGACATCTCATCAGCTTCAAATCTCACACAGATAGCGAGATTTTACGCACACGAGAGGGATGTTTGTCATGTGGTCTGGAAACCGTGTGCCTCGGGTTATACAGACAACCCAACGGAGCTTCTCACATGTGGACGTGATCAAATGGTCAAGGTATGGAATGTATCCACCTCCGAATGCTGTTTTTGTACCAAAGTTCCTGGTCAGTCACGTTATCATGCAAATGATTCTGGAAAACGTTCAAATCAGAAAAATAATGTTAGCGGAGCCCCATGGATATCTGCTTGTTACACCACAGGGAAGAATTCGATGGTGAATATCTTATTTTCGGGATTACGGGGTGAATTA ] [-] EMBL CD157722 [ ATGTGGACGTGATCAAATGGTCAAGGTATGGAATGTATCCACCTCCGAATGCTGTTTTTGTACCAAAGTTCCTGGTCAGTCACGTTATCATGCAAATGATTCTGGAAAACGTTCAAATCAGAAAAATAATGTTAGCGGAGCCCCATGGATATCTGCTTGTTACACCACAGGGAAGAATTCGATGGTGAATATCTTATTTTCGGGATTACGGGGTGAATTATTCCGTTGGAGCTGGTCAGATGC ] [+] EMBL CD125835 [ TTACACCACAGGGAAGAATTCGATGGTGAATATCTTATTTTCGGGATTACGGGGTGAATTATTCCGTTGGAGCTGCTCAGATGCACCTACTAACATAACACCTGAAAACCAAGGGCATTCTATGCTGATTTTTTCAATGTTGTTTGTTCCTAATTCTCCTGGGCTAGTGATTACAGTCAGCCAAGATAGAGTTCTGATTGTGTGGGAGTTAGTTGAAGAATCGCTCCCGTTAGTTGTTTTGCGACTACCGACACTTTCTGCAGGGGTGTTTTCTCTAGCTCAGTCTTCGTTTAGTAATAGCCCTTTAGTCGCAGGGCTTTCAGATGGATCTATTTTGTTCTGGAAAGTTTATTCACCGAATATGAATGATGGTAACAATTCCTTTGACAATCGAAGTAAGGACAAATCTATTTCAATATCACCTCGGGGATCTCAGTCATCCCCTATAACCGCTCTTGCTTGGCATCCTTTACCGCAATACGAAAACATCCTTGCCTATGGGACCGAATCCGGTTGTGTGGAGATAGTCGATATTAACAAGCTACAGAA ] [+] EMBL CD159459 [ TCTCAGTCATCCCCTATAACCGCTCTTGCTTGGCATCCTTTACCGCAATACGAAAACATCCTTGCCTATGGGACCGAATCCGGTTGTGTGGAGATAGTCGATATTAACAAGCTACAGAAAATACAGAATCGGAAGCCGAAACCACAGTTGCACGCGTTTGGTTCGACCGTATACCGAGTTGCTTGGGGGCCTATAATATTTACGGGTTCGCATCACAAAAATGAACAGATAGAAACTAAAAGTCATTTGAAACCTGATAATTCTGCACTCTTATCAAATACAACTGTAGAGGAAAATGTCAGGTGCAATACAGAATCCGAGGCTAAGTTTCCTTTCTATGTTTATAGTGTAAGTAAAGGAAAAATCCACTGTCATTTTGGAGGCGGTCGCCCTCCAGTTGAAGTTAGCATGAAGTTTCCTTCTCCTCCAAATACCACTGGGGAAGATTGGGAA ] [-] EMBL CD159493 [ CTCAGTCATCCCCTATAACCGCTCTTGCTTGGCATCCTTTACCGCAATACGAAAACATCCTTGCCTATGGGACCGAATCCGGTTGTGTGGAGATAGTCGATATTAACAAGCTACAGAAAATACAGAATCGGAAGCCGAAACCACAGTTGCACGCGTTTGGTTCGACCGTATACCGAGTTGCTTGGGGGCCTATAATATTTACGGGTTCGCATCACAAAAATGAACAGATAGAAACTAAAAGTCATTT ] [+] EMBL CD067162 [ AAGTTTCCTTTCTATGTTTATAGTGTAAGTAAAGGAAAAATCCACTGTCATTTTGGAGGCGGTCGCCCTCCAGTTGAAGTTAGCATGAAGTTTCCTTCTCCTCCAAATACCACTGAGGAAGATTGGAAAACCCTGATTCGTAGTGATATAGCATTCCGCCCTGTCAGTAAAACTAAACAGTCATCAGCTGATCCAGTTCCTGATACCTT] consensusID : consensus_9301#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 366 fasta sequence [AACTAGTATTCGCATAACAATATATATTGATATTCTTTTACTGTTTCTGATCAACGGCATACAAACTAAGTAATAGAGATACTTGAAATGTATAGATACTTATTGTAAAGCCCAAAATTTCTTACTGAGCGAAATTCAACTATGTGAATATAGTGATGACCTAATATTCTATTACACGAACATGACTAGAAATACGACAGACTGGATACAACTAAGAGTGGAAAACTATATTATTGGATTGTGACAAAGATAATCAGTTTAAATTTATGACCAAAAAAATTACGCAGAAAACATCTCTAACTAGTGACTTCGATAGTTACTCACCTTGACCATTTGATCACGTCCACATGTGAGAAGCTCCGTTGG] [+] EMBL CD122784 [AACTAGTATTCGCATAACAATATATATTGATATTCTTTTACTGTTTCTGATCAACGGCATACAAACTAAGTAATAGAGATACTTGAAATGTATAGATACTTATTGTAAAGCCCAAAATTTCTTACTGAGCGAAATTCAACTATGTGAATATAGTGATGACCTAATATTCTATTACACGAACATGACTAGAAATACGACAGACTGGATACAACTAAGAGTGGAAAACTATATTATTGGATTGTGACAAAGATAATCAGTTTAAATTTATGACCAAAAAAATTACGCAGAAAACATCTCTAACTAGTGACTTCGATAGTTACTCACCTTGACCATTTGATCACGTCCACATGTGAGAAGCTCCGTTGG] [+] EMBL CD123022 [AACTAGTATTCGCATAACAATATATATTGATATTCTTTTACTGTTTCCGATCAACGGCATACAAACTAAGTAATAGAGATACTTGAAATGTATAGATACTTATTGTAAAGCCCAAAATTTCTTACTGAGCGAAATTCAACTATGTGAATATAGTGATGACCTAATATTCTATTACACGAACATGACTAGAAATACGACAGACTGGATACAACTAAGAGTGGAAAACTATATTATTGGATTGTGACAAAGATAATCAGTTTAAATTTATGACCAAAAAAATTACGCAGAAAACATCTCTAACTAGTGACTTCGATAGTTACTCACCTTGACCATTTGATCACGTCCACATGTGAGAAGCTCCGTTGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9301#0 GAAAAAATAAAACACATTATCTGTCCAAAAAGTATGAAAACGACTCTGTACTGGTCTGTG 60 consensus_9301#1 ------------------------------------------------------------ consensus_9301#0 CATTAGAGAAGTCAGGATTTGACTACTCAATTTTAAGAGTTGCTGTAGGATACAAGAAAG 120 consensus_9301#1 ------------------------------------------------------------ consensus_9301#0 GACTGGTCGGCGTTTATATGTTCAAACCATCAGACATCTCATCAGCTTCAAATCTCACAC 180 consensus_9301#1 ------------------------------------------------------------ consensus_9301#0 AGATAGCGAGATNTTACGCACACGAGAGGGATGTTTGTCATGTGGTCTGGAAACCGTGTG 240 consensus_9301#1 ------------------------------------------------------------ consensus_9301#0 CCTCGGGTTATACAGACAACCCAACGGAGCTTCTCACATGTGGACGTGATCAAATGGTCA 300 consensus_9301#1 ------------------------------------------------------------ consensus_9301#0 AGGTATGGAATGTATCCACCTCCGAATGCTGTTTTTGTACCAAAGTTCCTGGTCAGTCAC 360 consensus_9301#1 --AACTAGTATTCGCATAACAATATATATTGATATTCTTTTACTGTTTCTGATCAACGGC 58 * * ** * * ** ** * ** * * *** *** *** * consensus_9301#0 GTTATCATGCAAATGATTCTGGAAAACGTTCAAATCAGAAAAATAATGTTAGCGGAGCCC 420 consensus_9301#1 AT-ACAAACTAAGTAAT----AGAGATACTTGAAATGTATAGATACTTATTGTAAAGCCC 113 * * * ** * ** * * * ** * * *** * * * ***** consensus_9301#0 CATGGATATCTGCTTGTTACACCACAGGGAAGAATTCGATGGTGAATATCTTATTTTCGG 480 consensus_9301#1 AA--AATTTCT-----------TACTGAGCGAAATTCAAC------TATGTGAATATAGT 154 * ** *** ** * * ***** * *** * * * * * consensus_9301#0 GATTACGGGGTGAATTATTCCGTTGGAGCTGGTCAGATGCACCTACTAACATAACAC--C 538 consensus_9301#1 GATGACCTAATATTCTATTACAC-GAACATGACTAGAAATACG-ACAGACTGGATACAAC 212 *** ** * **** * * * ** *** ** ** ** * ** * consensus_9301#0 TGAAAACCAAGGGCATTCTATGCTGATTTTTTCAATGTTGTTTGTTCCTAATTCTCCTGG 598 consensus_9301#1 TAAGAGTGGAAAACTATATTATTGGATTGTGACAAAGATAATCAGTTTAAATTTAT---G 269 * * * * * * * **** * *** * * * * **** * consensus_9301#0 GCTAGTGATTACAGTCAGCCAAGATAGAGTTCTGATTGTGTGGGAGTTAGTTGAAGAATC 658 consensus_9301#1 ACCAAAAA----AATTACGCAGAAAACATCTCTAACT-------AGTGACTTCGATAGTT 318 * * * * * * ** * * * *** * * *** * ** * * * consensus_9301#0 GCTCCCGTTAGTTGTTTTGCGACTACCGACACTTTCTGCAGGGGTGTTTTCTCTAGCTCA 718 consensus_9301#1 ACTCACCTTGACCATTTGATCAC-GTCCACA-TGTGAGAAGCTCCGTTGG---------- 366 *** * ** *** ** * *** * * * ** *** consensus_9301#0 GTCTTCGTTTAGTAATAGCCCTTTAGTCGCAGGGCTTTCAGATGGATCTATTTTGTTCTG 778 consensus_9301#1 ------------------------------------------------------------ consensus_9301#0 GAAAGTTTATTCACCGAATATGAATGATGGTAACAATTCCTTTGACAATCGAAGTAAGGA 838 consensus_9301#1 ------------------------------------------------------------ consensus_9301#0 CAAATCTATTTCAATATCACCTCGGGGATCTCAGTCATCCCCTATAACCGCTCTTGCTTG 898 consensus_9301#1 ------------------------------------------------------------ consensus_9301#0 GCATCCTTTACCGCAATACGAAAACATCCTTGCCTATGGGACCGAATCCGGTTGTGTGGA 958 consensus_9301#1 ------------------------------------------------------------ consensus_9301#0 GATAGTCGATATTAACAAGCTACAGAAAATACAGAATCGGAAGCCGAAACCACAGTTGCA 1018 consensus_9301#1 ------------------------------------------------------------ consensus_9301#0 CGCGTTTGGTTCGACCGTATACCGAGTTGCTTGGGGGCCTATAATATTTACGGGTTCGCA 1078 consensus_9301#1 ------------------------------------------------------------ consensus_9301#0 TCACAAAAATGAACAGATAGAAACTAAAAGTCATTTGAAACCTGATAATTCTGCACTCTT 1138 consensus_9301#1 ------------------------------------------------------------ consensus_9301#0 ATCAAATACAACTGTAGAGGAAAATGTCAGGTGCAATACAGAATCCGAGGCTAAGTTTCC 1198 consensus_9301#1 ------------------------------------------------------------ consensus_9301#0 TTTCTATGTTTATAGTGTAAGTAAAGGAAAAATCCACTGTCATTTTGGAGGCGGTCGCCC 1258 consensus_9301#1 ------------------------------------------------------------ consensus_9301#0 TCCAGTTGAAGTTAGCATGAAGTTTCCTTCTCCTCCAAATACCACTGGGGAAGATTGGGA 1318 consensus_9301#1 ------------------------------------------------------------ consensus_9301#0 AACCCTGATTCGTAGTGATATAGCATTCCGCCCTGTCAGTAAAACTAAACAGTCATCAGC 1378 consensus_9301#1 ------------------------------------------------------------ consensus_9301#0 TGATCCAGTTCCTGATACCTT 1399 consensus_9301#1 --------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||