cluster # 9307

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Schistosoma mansoni
cluster # 9307 cluster # 9307 Sequences # 9 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9307#0 length = 1253 sequences # 7

consensus_9307#1 length = 111 sequences # 1
consensus_9307#2 length = 81 sequences # 1

consensusID : consensus_9307#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 7
consensus length = 1253
fasta sequence

                              [TCTTGGTGCTACCACCAACATTCCCTTATGGTGGGATGGAAAATCCATGTTTAACATTTGTTTCACCAACCTTATTGGCTGGTGATCGATCATTAGCTAATGTAATCGCTCATGAGATCGCTCATTCATGGACTGGTAATTTAGTAACAAATTCAAGTTGGGAGGATTTTTGGTTAAACGAAGGACATACTGTGTATTTGGAACGCTTAATTGAAGAACGCATTCATGGGTCGCATATGAGGCATCTTCATTTAAGTTTAGGTTACAAGG-AACTGCTGGAAGAAGTCAAAAGACTTGGCCCATCAGATCCAATGACAAAGCTGATCGTAGACTTAAAAGGAATTGATCCAGACGAAGCTTATAGTCGAATTCCCTATGAAAAGGGATCTCTTTTACTCTACTACTTAGAGACTTTATATGGAAAAGAATCTATGCTTAATTGGTTAAAAGCTTATGTGAAACAGTTTTCTGGACAATCACTTAATTCAAATACTTGGTTGGAATTTTTAACAAGTCAACTAGGTTCCGATGTACTTAAC-CCGAAACATCAGTTGGATACTTGGATGCGTAGTCCAGGTTTGCCCCCATGGATACCAAAGTTCGATGCTGACGAGTTACTTTCAGAATGTGATAGTATGCAAAAATTACTTACTTCATCTGATCTTTGTTCAAATGTTACTGAAATGCAAAGTTTGACTCGACTATGGAATAAAATGTCACATGTACAACGTGAATTAACTTTACGCCACGTTGTTGACTCTGAACCATTAAATGTTAATAATTTATGCAAAATTGATGAGCTATTACAGCTATCTAAACAGAAAAATGCTGAGATACGAGTACAGTGGTGTCTAATCTGCATTATTTCCCGTCATTTACCTGCGTTGGATCACATTCTTGAATTTTTAAACAGTCAGGGTCGTATGAAGTACACTCGCACCATATATCGTGCTTTANACGAATGGCCAGAAGCTAGGGAGCANACAATANAAAATTTCTATGAACAACGTCCATTTATGCATCANACAAACTGC-ATGCTGGTCGAAAGGGATTTAGATCTTCATGANNATGGGAAAACTGTATCTACTATTTANATTTCAGAT-AATTTACNAATAACATGTATAAACTNTGATGNGNTGNTGTATACCCGA-TC-ATATATCATTNCGATGNTATGGNATNNAG-TG-TTCATTGGGNTTTATT-TT-AT-ANATAT-AAATTCTG-TTATCC-TCNNNAGTATTAAATATATAAGTTTAACA]

[-] EMBL CD124985             [TCTTGGTGCTACCACCAACATTCCCTTATGGTGGGATGGAAAATCCATGTTTAACATTTGTTTCACCAACCTTATTGGCTGGTGATCGATCATTAGCTAATGTAATCGCTCATGAGATCGCTCATTCATGGACTGGTAATTTAGTAACAAATTCAAGTTGGGAGGATTTTTGGTTAAACGAAGGACATACTGTGTATTTGGAACGCTTAATTGAAGAACGCATTCATGGGTCGCATATGAGGCATTTTCATTTAAGTTTAGGTTACAAGG AACTGCTGGAAGAAGTCAAAAGACTTGGCCCATCAGATCCAATGACAAAGCTGATCGTAGACTTAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[-] EMBL CD166693             [                                                                                                                                                                                                                                            ATGAGGCATCTTCATTTAAGTTTAGGTTACAAGG AACTGCTGGAAGAAGTCAAAAGACTTGGCCCATCAGATCCAATGACAAAGCTGATCGTAGACTTAAAAGGAATTGATCCAGACGAAGCTTATAGTCGAATTCCCTATGAAAAGGGATCTCTTTTACTCTACTACTTAGAGACTTTATATGGAAAAGAATCTATGCTTAATTGGTTAAAAGCTTATGTGAAACAGTTTTCTGGAC ATCACTTAATTCAAATACTTGGTTGGAATTTTTAACAAGTCAACTAGGTTCCGA GTACTTAACACCGAAACATCAGTT GATACT  GATG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[-] EMBL CD166653             [                                                                                                                                                                                                                                            ATGAGGCATCTTCATTTAAGTTTAGGTTACAAGG AACTGCTGGAAGAAGTCAAAAGACTTGGCCCATCAGATCCAATGACAAAGCTGATCGTAGACTTAAAAGGAATTGATCCAGACGAAGCTTATAGTCGAATTCCCTATGAAAAGGGATCTCTTTTACTCTACTACTTAGAGACTTTATATGGAAAAGAATCTATGCTTAATTGGTTAAAAGCTTATGTGAAACAGTTTTCTGGACAATCACTTAATTCAAATACTTGGTTGGAATTTTTAACAAGTCAACTAGGTTCCGATGTACTTAAC CCGAAACGTCAGT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL CD166630             [                                                                                                                                                                                                                                                                        ACAAGGTAACTGCTGGAAGAAGTCAAAAGACTTGGCCCATCAGATCCAATGACAAAGCTGATCGTAGACTTAAAAGGAATTGATCCAGACGAAGCTTATAGTCGAATTCCCTATGAAAAGGGATCTCTTTTACTCTACTACTTAGAGACTTTATATGGAAAAGAATCTATGCTTAATTGGTTAAAAGCTTATGTGAAACAGTTTTCTGGACAATCACTTAATTCAAATACTTGGTTGGAATTTTTAACAAGTCAACTAGGTTCCGATGTACTTAAC CCGAAACATCA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL CD079441             [                                                                                                                                                                                                                                                                                                                                                                                         TGAAAAGGGATCTCTTTTACTCTACTACTTAGAGACTTTATATGGAAAAGAATCTATGCTTAATTGGTTAAAAGCTTATGTGAAACAGTTTTCTGGACAATCACTTAATTCAAATACTTGGTTGGAATTTTTAACAAGTCAACTAGGTTCCGATGTACTTAAC CCGAAACATCAGTTGGATACTTGGATGCGTAGTCCAGGTTTGCCCCCATGGATACCAAAGTTCGATGCTGACGAGTTACTTTCAGAATGTGATAGTATGCAAAAATTACTTACTTCATCTGATCTTTGTTCAAATGTTACTGAAATGCAAAGTTTGACTCGACTATGGAATAAAATGTCACATGTACAACGTGAATTAACTTTACGCCACGTTGTTGACTCTGAACCATTAAATGTTAATAATTTATGCAAAATTGATGAGCTATTACAGCTATCTAAACAGAAAAATGCTGAGATACGAGTACAGTGGTGTCTAATCTGCATTATTTCCCGTCATTTACCTGCGTTGGATCACATTCTTGAATTTTTAAACAGTCAGGGTCGTATGAAGTACACTCGCACCATATATCGTGCTTTANACGAATGGCCAGAAGCTAGGGAGCANACAATANAAAATTTCTATGAACAACGTCCATTTATGCATCANACAAACTGC ATGCTGGTCGAAAGGGATTTAGATCTTCATGANNATGGGAAAACTGTATCTACTATTTANATTTCAGAT AATTTACNAATAACATGTATAAACTNTGATGNGNTGNTGTATACCCGA TC ATATATCATTNCGATGNTATGGNATNNAG TG TTCATTGGGNTTTATT TT AT ANATAT AAATTCTG TTATCC TCNNNAGTAT                   ]
[-] EMBL CD186757             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           tcactgcGTCGACGAGCTTCCGGTGTACTTAAC CCGAAACATCAGTTGGATACTTGGATGCGTAGTCCAGGTTTGCCCCCATGGATACCAAAGTTCGATGCTGACGAGTTACTTTCAGAATGTGATAGTATGCAAAAATTACTTACTTCATCTGATCTTTGTTCAAATGTTACTGAAATGCAAAGTTTGACTCGACTATGGAATAAAATGTCACATGTACAACGTGAATTAACTTTACGCCACGTTGTTGACTCTGAACCATTAAATGTTAATAATTTATGCAAAATTGATGAGCTATTACAGCTATCTAAACAGAAAAATGCTGAG                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[-] EMBL CD073711             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ATCAGTTGGATACTTGGATGCGTAGTCCAGGTTTGCCCCCATGGATACCAAAGTTCGATGCTGACGAGTTACTTTCAGAATGTGATAGTATGCAAAAATTACTTACTTCATCTGATCTTTGTTCAAATGTTACTGAAATGCAAAGTTTGACTCGACTATGGAATAAAATGTCACATGTACAACGTGAATTAACTTTACGCCACGTTGTTGACTCTGAACCATTAAATGTTAATAATTTATGCAAAATTGATGAGCTATTACAGCTATCTAAACAGAAAAATGCTGAGATACGAGTACAGTGGTGTCTAATCTGCATTATTTCCCGTCATTTACCTGCGTTGGATCACATTCTTGAATTTTTAAACAGTCAGGGTCGTATGAAGTACACTCGCACCATATATCGTGCTTTAAACGAATGGCCAGAAGCTAGGGAGCAAACAATAAAAAATTTCTATGAACAACGTCCATTTATGCATCAAAC AACTGCAATGCTGGTCGAAAGGGATTTAGATCTTCATGAAAATGGGAAAACTGTATCTACTATTTA AATTCAGATAAATTTACAAATAACATGTATAAACTTTGATGTGTTGTTGTATA CCGATTCAATATATCATTTCGATGTTATGGTAATAAGTTGTTTCATTTGGGTTTATTGTTCATAAAATATAAAATACTGTTTATCCATCAGAAGTAATAAATATATAAGTTTAACA]




>consensus_9307#0
TCTTGGTGCTACCACCAACATTCCCTTATGGTGGGATGGAAAATCCATGTTTAACATTTG
TTTCACCAACCTTATTGGCTGGTGATCGATCATTAGCTAATGTAATCGCTCATGAGATCG
CTCATTCATGGACTGGTAATTTAGTAACAAATTCAAGTTGGGAGGATTTTTGGTTAAACG
AAGGACATACTGTGTATTTGGAACGCTTAATTGAAGAACGCATTCATGGGTCGCATATGA
GGCATCTTCATTTAAGTTTAGGTTACAAGGAACTGCTGGAAGAAGTCAAAAGACTTGGCC
CATCAGATCCAATGACAAAGCTGATCGTAGACTTAAAAGGAATTGATCCAGACGAAGCTT
ATAGTCGAATTCCCTATGAAAAGGGATCTCTTTTACTCTACTACTTAGAGACTTTATATG
GAAAAGAATCTATGCTTAATTGGTTAAAAGCTTATGTGAAACAGTTTTCTGGACAATCAC
TTAATTCAAATACTTGGTTGGAATTTTTAACAAGTCAACTAGGTTCCGATGTACTTAACC
CGAAACATCAGTTGGATACTTGGATGCGTAGTCCAGGTTTGCCCCCATGGATACCAAAGT
TCGATGCTGACGAGTTACTTTCAGAATGTGATAGTATGCAAAAATTACTTACTTCATCTG
ATCTTTGTTCAAATGTTACTGAAATGCAAAGTTTGACTCGACTATGGAATAAAATGTCAC
ATGTACAACGTGAATTAACTTTACGCCACGTTGTTGACTCTGAACCATTAAATGTTAATA
ATTTATGCAAAATTGATGAGCTATTACAGCTATCTAAACAGAAAAATGCTGAGATACGAG
TACAGTGGTGTCTAATCTGCATTATTTCCCGTCATTTACCTGCGTTGGATCACATTCTTG
AATTTTTAAACAGTCAGGGTCGTATGAAGTACACTCGCACCATATATCGTGCTTTANACG
AATGGCCAGAAGCTAGGGAGCANACAATANAAAATTTCTATGAACAACGTCCATTTATGC
ATCANACAAACTGCATGCTGGTCGAAAGGGATTTAGATCTTCATGANNATGGGAAAACTG
TATCTACTATTTANATTTCAGATAATTTACNAATAACATGTATAAACTNTGATGNGNTGN
TGTATACCCGATCATATATCATTNCGATGNTATGGNATNNAGTGTTCATTGGGNTTTATT
TTATANATATAAATTCTGTTATCCTCNNNAGTATTAAATATATAAGTTTAACA

consensusID : consensus_9307#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 111
fasta sequence

                              [TATCATTATGATTNGTGCATGTTATTTGTAAATTTATCTGAATTTAAATACTAGATACAGTTTTCCCATNTNCATCAAGCCAAATGCANGTGTTGANAATATGTTTAGTNT]

[+] EMBL SMRAP155             [TATCATTATGATTNGTGCATGTTATTTGTAAATTTATCTGAATTTAAATACTAGATACAGTTTTCCCATNTNCATCAAGCCAAATGCANGTGTTGANAATATGTTTAGTNT]




>consensus_9307#1
TATCATTATGATTNGTGCATGTTATTTGTAAATTTATCTGAATTTAAATACTAGATACAG
TTTTCCCATNTNCATCAAGCCAAATGCANGTGTTGANAATATGTTTAGTNT

consensusID : consensus_9307#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 81
fasta sequence

                              [TAAATTTATCTGAATTTAAATAGTAGATACAGTTTCCCCATTTTCATGAAGTCAAATGCAAGTGTTGAGAATATGTTTAGT]

[+] EMBL SMRAP173             [TAAATTTATCTGAATTTAAATAGTAGATACAGTTTCCCCATTTTCATGAAGTCAAATGCAAGTGTTGAGAATATGTTTAGT]




>consensus_9307#2
TAAATTTATCTGAATTTAAATAGTAGATACAGTTTCCCCATTTTCATGAAGTCAAATGCA
AGTGTTGAGAATATGTTTAGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9307#1      ------------------------------------------------------------
consensus_9307#2      ------------------------------------------------------------
consensus_9307#0      TCTTGGTGCTACCACCAACATTCCCTTATGGTGGGATGGAAAATCCATGTTTAACATTTG 60
                                                                                  

consensus_9307#1      ------------------------------------------------------------
consensus_9307#2      ------------------------------------------------------------
consensus_9307#0      TTTCACCAACCTTATTGGCTGGTGATCGATCATTAGCTAATGTAATCGCTCATGAGATCG 120
                                                                                  

consensus_9307#1      ------------------------------------------------------------
consensus_9307#2      ------------------------------------------------------------
consensus_9307#0      CTCATTCATGGACTGGTAATTTAGTAACAAATTCAAGTTGGGAGGATTTTTGGTTAAACG 180
                                                                                  

consensus_9307#1      ------------------------------------------------------------
consensus_9307#2      ------------------------------------------------------------
consensus_9307#0      AAGGACATACTGTGTATTTGGAACGCTTAATTGAAGAACGCATTCATGGGTCGCATATGA 240
                                                                                  

consensus_9307#1      ------------------------------------------------------------
consensus_9307#2      ------------------------------------------------------------
consensus_9307#0      GGCATCTTCATTTAAGTTTAGGTTACAAGGAACTGCTGGAAGAAGTCAAAAGACTTGGCC 300
                                                                                  

consensus_9307#1      ------------------------------------------------------------
consensus_9307#2      ------------------------------------------------------------
consensus_9307#0      CATCAGATCCAATGACAAAGCTGATCGTAGACTTAAAAGGAATTGATCCAGACGAAGCTT 360
                                                                                  

consensus_9307#1      ------------------------------------------------------------
consensus_9307#2      ------------------------------------------------------------
consensus_9307#0      ATAGTCGAATTCCCTATGAAAAGGGATCTCTTTTACTCTACTACTTAGAGACTTTATATG 420
                                                                                  

consensus_9307#1      ------------------------------------------------------------
consensus_9307#2      ------------------------------------------------------------
consensus_9307#0      GAAAAGAATCTATGCTTAATTGGTTAAAAGCTTATGTGAAACAGTTTTCTGGACAATCAC 480
                                                                                  

consensus_9307#1      ------------------------------------------------------------
consensus_9307#2      ------------------------------------------------------------
consensus_9307#0      TTAATTCAAATACTTGGTTGGAATTTTTAACAAGTCAACTAGGTTCCGATGTACTTAACC 540
                                                                                  

consensus_9307#1      ------------------------------------------------------------
consensus_9307#2      ------------------------------------------------------------
consensus_9307#0      CGAAACATCAGTTGGATACTTGGATGCGTAGTCCAGGTTTGCCCCCATGGATACCAAAGT 600
                                                                                  

consensus_9307#1      ------------------------------------------------------------
consensus_9307#2      ------------------------------------------------------------
consensus_9307#0      TCGATGCTGACGAGTTACTTTCAGAATGTGATAGTATGCAAAAATTACTTACTTCATCTG 660
                                                                                  

consensus_9307#1      ------------------------------------------------------------
consensus_9307#2      ------------------------------------------------------------
consensus_9307#0      ATCTTTGTTCAAATGTTACTGAAATGCAAAGTTTGACTCGACTATGGAATAAAATGTCAC 720
                                                                                  

consensus_9307#1      ------------------------------------------------------------
consensus_9307#2      ------------------------------------------------------------
consensus_9307#0      ATGTACAACGTGAATTAACTTTACGCCACGTTGTTGACTCTGAACCATTAAATGTTAATA 780
                                                                                  

consensus_9307#1      ------------------------------------------------------------
consensus_9307#2      ------------------------------------------------------------
consensus_9307#0      ATTTATGCAAAATTGATGAGCTATTACAGCTATCTAAACAGAAAAATGCTGAGATACGAG 840
                                                                                  

consensus_9307#1      ------------------------------------------------------------
consensus_9307#2      ------------------------------------------------------------
consensus_9307#0      TACAGTGGTGTCTAATCTGCATTATTTCCCGTCATTTACCTGCGTTGGATCACATTCTTG 900
                                                                                  

consensus_9307#1      ------------------------------------------------------------
consensus_9307#2      ------------------------------------------------------------
consensus_9307#0      AATTTTTAAACAGTCAGGGTCGTATGAAGTACACTCGCACCATATATCGTGCTTTANACG 960
                                                                                  

consensus_9307#1      ------------------------------------------------------------
consensus_9307#2      ------------------------------------------------------------
consensus_9307#0      AATGGCCAGAAGCTAGGGAGCANACAATANAAAATTTCTATGAACAACGTCCATTTATGC 1020
                                                                                  

consensus_9307#1      ------------------------------------------------------------
consensus_9307#2      ------------------------------------------------------------
consensus_9307#0      ATCANACAAACTGCATGCTGGTCGAAAGGGATTTAGATCTTCATGANNATGGGAAAACTG 1080
                                                                                  

consensus_9307#1      ----TATCATTATGATTNGTGCATGTTATTTGTAAATTTATCTGAATTTAAATACTAGAT 56
consensus_9307#2      --------------------------------TAAATTTATCTGAATTTAAATAGTAGAT 28
consensus_9307#0      TATCTACTATTTANATTTCAGATAATTTACNAATAACATGTATAAACTNTGATGN--GNT 1138
                                                        **  * * * ** *   **    * *

consensus_9307#1      ACAGTTTTCCCA--TNTNCATCAAGCCAAATGCA-NGTGTTGANAATATGTTTAGTNT-- 111
consensus_9307#2      ACAGTTTCCCCA--TTTTCATGAAGTCAAATGCA-AGTGTTGAGAATATGTTTAGT---- 81
consensus_9307#0      GNTGTATACCCGATCATATATCATTNCGATGNTATGGNATNNAGTGTTCATTGGGNTTTA 1198
                         ** * ***     *  ** *   * *    *  *  *  *   *   **  *     

consensus_9307#1      -------------------------------------------------------
consensus_9307#2      -------------------------------------------------------
consensus_9307#0      TTTTATANATATAAATTCTGTTATCCTCNNNAGTATTAAATATATAAGTTTAACA 1253