These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9315#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 834 fasta sequence [TCGAGGACCAAGCCGAAGTTGATCTATTCAAAACTCAATCTACAGAAGTAGTCATTTTCTTCCACTATCTACAGATCATGTTGGGTCACAATCCACGAATATCCCGAGTCCATATATTCCTCTATCTGTCCAGACATCAGATTGTGGATGGGGATGCATGTTTCGATGTGGACAAATGTTGCTTGCTCAAGCCCTAGTAGTTCATTTTTTGGGCAGAAATTGGAGGCTAACAAAAAATCAAAGAGATTCGGATTTCAGCCTTCAAATTATCAAATGGTTCAATGATTCTTGGTCCCCATTTTCTCCGTTATCTTTGCATCGTTTAGTTCAAATGAGTGATAGAAAGCCAGGTGAATGGTGCGGGCCATCTTCAATTTGCTCGGCAATCTTACGTGTGATGGCAAAAGGAAGTTCATTGGACAGCCGCTTAAGCCAAGTACAGGTGTATTTAGCTCGTGACAGAGTTATATATCGTGAGGAAATTATAGATCTTGCAAGAGGATTACACACTTCATATCAGTATCAACCCAAGATATATTTCACTGATCACACAGCTTTATATCGTTCACAATCTGATCAGACTAACGACTCACACAGCTTCAAACCAACAGCTATCTTATTACTCATCCCACTGATGTTCGGAAAAGGAAATCGCATTAACCCACGTTATATTCAAGTGGTACTGCGTCTATTTTCGGATCCAGCATTTGTAGGCTTAATCGGTGGTCGTCGAAAACATTCCAGCTATTATGTTGGATGTCAAAATAATTCGCTAATTTACTTGGATCCACATTTTACTCGACCC-CCCATCCACTGAATTCCCCTAAATTTTCA] [+] EMBL CD082101 [TCGAGGACCAAGCCGAAGTTGATCTATTCAAAACTCAATCTACAGAAGTAGTCATTTTCTTCCACTATCTACAGATCATGTTGGGTCACAATCCACGAATATCCCGAGTCCATATATTCCTCTATCTGTCCAGACATCAGATTGTGGATGGGGATGCATGTTTCGATGTGGACAAATGTTGCTTGCTCAAGCCCTAGTAGTTCATTTTTTGGGCAGAAATTGGAGGCTAACAAAAAATCAAAGAGATTCGGATTTCAGCCTTCAAATTATCAAATGGTTCAATGATTCTTGGTCCCCATTTTCTCCGTTATCTTTGCATCGTTTAGTTCAAATGAGTGATAGAAAGCCAGGTGAATGGTGCGGGCCATCTTCAATTTGCTCGGCAATCTTACGTGTGATGGCAAAAGGAAGTTCATTGGACAGCCGCTTAAGCCAAGTACAGGTGTATTTAGCTCGTGACAGAGTTATATATCGTGAGGAAATTATAGATCTTGCAAGAGGATTACACACTTCATATCAGTATCAACCCAAGATATATTTCACTGATCACACAGCTTTATATCGTTCACAATCTGATCAGACTAACGACTCACACAGCTTCAAACCAACAGCTATCTTATTACTCATCCCACTGATGTTCGGAAAAGGAAATCGCATTAACCCACGTTATATTCAAGTGGTACTGCGTCTAT ] [+] EMBL CD152985 [ AAACTCAATCAACAGAAGTAGTCATTTTATTCCACTATCTACAGATCATGTTGGGTCACAATCCACGAATATCCCGAGTCCATATATTCCTCTATCTGTCCAGACATCAGACTGTGGATGGGGATGCATGTTTCGATGTGGACAAATGTTGCTTGCTCAAGCCCTAGTAGTTCATTTTTTGGGCAGAAATTGGAGGCTAACAAAAAATCAAAGAGATTCGGATTTCAGCCTTCAAATTATCAAATGGTTCAATGATTCTTGGTCCCCATTTTCTCCGTTATCTTTGCATCGTTTAGTTCAAATGAGTGATAGAAAGCCAGGTGAATGGTGCGGGCCATCTTCAATTTGCTCGGCCTTCTTACGTGTGATGGCAAAAGGAAGTTCATTGGACAGCCGCTTATGCCAAGTACAGGTGTATTTAGCTCGTGACAGAGTTATATATCGTGAGGAAATTATAGATCTTGCAAGAGGATTACACACTTCATATCAGTATCAACCCAAGATATATTTCACTGATCACACAGCTTTATATCGTTCACAATCTGATCAGACTAACGACTCAC ] [+] EMBL CD120748 [ AGATTGTGGATGGGGATGCATGTTTCGATGTGGACAAATGTTGCTTGCTCAAGCCCTAGTAGTTCATTTTTTGGGCAGAAATTGGAGGCTAACAAAAAATCAAAGAGATTCGGATTTCAGCCTTCAAATTATCAAATGGTTCAATGATTCTTGGTCCCCGTTTTCTCCGTTATCTTTGCATCGTTTAGTTCAAATGAGTGATAGAAAGCCAGGTGAATGGTGCGGGCCATCTTCAATTTGCTCGGCAATCTTACGTGTGATGGCAAAAGGAAG ] [+] EMBL CD120628 [ AGATTGTGGATGGGGATGCATGTTTCGATGTGGACAAATGTTGCTTGCTCAAGCCCTAGTAGTTCATTTTTTGGGCAGAAATTGGAGGCTAACAAAAAATCAAAGAGATTCGGATTTCAGCCTTCAAATTATCAAATGGTTCAATGATTCTTGGTCCCCATTTTCTCCGTTATCTTTGCATCGTTTAGTTCAAATGAGTGATAGAGAGCCAGGTGAATGGTGCGGGCCATCTTCAATTTGCTCGGCAATCTTACGTGTGATGGCAAAAGGAAG ] [+] EMBL CD120894 [ TAGTAGTTCATTTTTTGGGCAGAAATTGGAGGCTAACAAAAAATCAAAGAGATTCGGATTTCAGCCTTCAAATTATCAAATGGTTCAATGATTCTTGGTCCCCATTTTCTCCGTTATCTTTGCATCGTTTAGTTCAAATGAGTGATAGAAAGCCAGGTGAATGGTGCGGGCCATCTTCAATTTGCTCGGCAATCTTACGTGTGATGGCAAAAGGAAGTTCATTGGACAG ] [+] EMBL BG931132 [ gtCTCGTGACAGAGTTATATATCGTGAGGAAATTATAGATCTCGCAAGAGGATTACACACTTCATATCAGTATCAACCCAAGATATATTTCACTGATCACACAGCTTTATATCGTTCACAATCTGATCAGACTAACGACTCACACAGCTTCAAACCAACAGCTATCTTATTACTCATCCCACTGATGTTCGGAAAAGGAAATCGCATTAACCCACGTTATATTCAAGTGGTACTGCGTCTATTTTCGGATCCAGCATTTGTAGGCTTAATCGGTGGTCGTCGAAAACATTCCAGCTATTATGTTGGATGTCAAAATAATTCGCTAATTTACTTGGATCCACATTTTACTCGACCC CCCATCCA ] [+] EMBL CD142244 [ TTCAAGTGGTACTGCGTCTATTTTCGGATCCAGCATTTGTAGGCTTAATCGGTGGTCGTCGAAAACATTCCAGCTATTATGTTGGATGTCAAAATAATTCGCTAATTTACTTGGATCCACATTTTACTCAACCCACCCAAAATCTGAATTCCCCTAAATTTTCA] consensusID : consensus_9315#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 606 fasta sequence [GCTATACTCAAAAGGGTCACCCGATCATCCTGAAAATGAACCGAAATGAAAGGAATCGCATTCGCACTCAGATCAGAGTTTCTCGGAGCAAAAACTCAGCATCTGTTACCCGATCCAGCTTCACAACTCTTGACCACATACGTTCAGTGTGGAATCAGTTAAAGTTTGGTTGGTCCATTCAGTTCTGGCCAAATTTCGATCAAAATGCAATTATATATATGCTCGGTCGGTGCTATTTCTCTCCTACTTCCGACAATTCCCCAACTATCACAAGGGATATAATTTTGGATGGAGATTCCTCAGATTTTGCTTCACACCTTTGCAAAAATCTTTCTAGTACCTCTACCAATAATATGCCGTATTCACTATCTACCGAAAGACCAGCATCATGTGACTGTGAAAGTATTCAAGCCGAAGTTGATCTATTCAAAACTCAATCAAAAAACTTATCGATTTACAGCAGAAGTAGTCATTTTATTCCACTATCTACAGATCATGTTGGGTCACAATCCACGAATATCCCGAGTCCATATATTCCTCTATCTGTCCAGACATCAGATTGTGGATGGGGATGCATGTTTCGANTGTGGACAAATGTTGCTTGCT] [+] EMBL CD130930 [GCTATACTCAAAAGGGTCACCCGATCATCCTGAAAATGAACCGAAATGAAAGGAATCGCATTCGCACTCAGATCAGAGTTTCTCGGAGCAAAAACTCAGCATCTGTTACCCGATCCAGCTTCACAACTCTTGACCACATACGTTCAGTGTGGAATCAGTTAAAGTTTGGTTGGTCCATTCAGTTCTGGCCAAATTTCGATCAAAATGCAATTATATATATGCTCGGTCGGTGCTATTTCTCTCCTACTTCCGACAATTCCCCAACTATCACAAGGGATATAATTTTGGATGGAGATTCCTCAGATTTTGCTTCACACCTTTGCAAAAATCTTTCTAGTACCTCTACCAATAATATGCCGTATTCACTATCTACCGAAAGACCAGCATCATGTGACTGT ] [-] EMBL CD135307 [ CCGTATTCACTATCTACCGAAAGACCAGCATCATGTGACTGTGAAAGTATTCAAGCCGAAGTTGATCTATTCAAAACTCAATCAAAAAACTTATCGATTTACAGCAGAAGTAGTCATTTTATTCCACTATCTACAGATCATGTTGGGTCACAATCCACGAATATCCCGAGTCCATATATTCCTCTATCTGTCCAGACATCAGATTGTGGATGGGGATGCATGTTTCGANTGTGGACAAATGTTGCTTGCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9315#0 TCGAGGACCAAGCCGAAGTTGATCTATTCAAAACTCAATCTACAGAAGTAGTCATTTTCT 60 consensus_9315#1 ------------------------------------------------------------ consensus_9315#0 TCCACTATCTACAGATCATGTTGGGTCACAATCCACGAATATCCCGAGTCCATATATTCC 120 consensus_9315#1 ------------------------------------------------------------ consensus_9315#0 TCTATCTGTCCAGACATCAGATTGTGGATGGGGATGCATGTTTCGATGTGGACAAATGTT 180 consensus_9315#1 ---------------------------------------------------------GCT 3 * * consensus_9315#0 GCTTGCTCAAGCCCTAGTAGTTCATTTTTTGGGCAGAAATTGGAGGCTAACAAAAAATCA 240 consensus_9315#1 ATACTCAAAAGGGTCACCCGATCATCCT---GAAAATGAACCGAAATGAAAGGAATCGCA 60 * *** * * **** * * * * ** ** ** ** consensus_9315#0 AAGAGATTCGGATTTCAGCCT-TCAAATTATCAAATGGTTCAATGATTCTTGGTCCCCAT 299 consensus_9315#1 TTCGCACTCAGATCAGAGTTTCTCGGAGCAAAAACTCAGCATCTGTTACCCGATCCAGCT 120 * ** *** ** * ** * * ** * ** * * * *** * consensus_9315#0 TTTCTCCGTTATCTTTGCAT-CGTTTAGT-TCAAATGAGTGATAGAAAGCCAGGTGAAT- 356 consensus_9315#1 TCACAAC-TCTTGACCACATACGTTCAGTGTGGAATCAGTTAAAGTTTGGTTGGTCCATT 179 * * * * * *** **** *** * *** *** * ** * *** ** consensus_9315#0 -GGTGCGGGCCATCTTCAATTTGCTCGGCAATCTTACGTGTGATGGCAAAAGGAAGTTCA 415 consensus_9315#1 CAGTTCTGGCCAAATTTCGATCAAAATGCAATTATATATATGCTCGGTCGGTG----CTA 235 ** * ***** ** * ***** ** * ** * * * * consensus_9315#0 TTGGACAGCCGCTTAAGCCAAGTACAGGTGTATTTAGCTCGTGACAGAGTTATATATCGT 475 consensus_9315#1 TTTCTCTCCTACTTCCGACAATTCCCCAACTATC--ACAAGGGATATAATTTTGGAT--- 290 ** * * *** * *** * * *** * * ** * * ** * ** consensus_9315#0 GAGGAAATTATAGATCTTGCA--AGAGGATTACACACTTCATATCAGTA--TCAACCCAA 531 consensus_9315#1 GGAGATTCCTCAGATTTTGCTTCACACCTTTGCAAAAATCTTTCTAGTACCTCTACCAAT 350 * ** **** **** * * ** ** * ** * **** ** *** * consensus_9315#0 GATATATTTCACTGATCACACAGCTTTATATCGTTCACAATCTGATCAGACTAACGACTC 591 consensus_9315#1 AATATGCCGTATTCACTATCTACCGAAAGACCAG-CATCATGTGACTGTGAAAGTATTCA 409 **** * * * * * * * * * ** ** *** * consensus_9315#0 ACACAGCTTCAAACCAACAGCTATCTTATTACTCATCCCACTGATGTTCGGAAAAGGAAA 651 consensus_9315#1 AGCCGAAGTTGATCTATTCAAAACTCAATCAAAAAACTTATCGATTTACAGCAGAAGTAG 469 * * * * * * * ** * * * * *** * * * * * * * consensus_9315#0 TCGCATTAACCCACGTTATATTCAAGTGGTACTGCGTCTATTTTCGGATCCAGCATTTGT 711 consensus_9315#1 TCATTTTATTCCAC--TATCTACAGATCATGTTGGGTCA------CAATCCACGA---AT 518 ** *** **** *** * ** * * ** *** ***** * * consensus_9315#0 AGGCTTAATCGGTGGTCGTCGAAAACATTCCAGCTATTATGTTGGATGTCAAAATAATTC 771 consensus_9315#1 ATCCCGAGTCCATATATTCCTCTATCTGTCCAGACATCAGATTGTGGATGGGGATGCAT- 577 * * * ** * * * * ***** ** * *** * ** * consensus_9315#0 GCTAATTTACTTGGATCCACATTTTACTCGACCCCCCATCCACTGAATTCCCCTAAATTT 831 consensus_9315#1 ---GTTTCGANTGTGGACAAATGTTGCTTGCT---------------------------- 606 ** ** ** ** ** ** * consensus_9315#0 TCA 834 consensus_9315#1 --- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||