These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9339#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 774 fasta sequence [ACTATGAATGGCTGCGTTTGGTAACTGAGTAGCAGCTTCATAACCCGGTAGGCTTGCCACACGTACTCCAGTTTCAACAGACCAAATATGTACAATTCCGTCTGGCGAACCAATTAAAACAAACTGACTGTCTGGTGTAAAACTGGCATGTAATGTTTGTCTATCAGTATTTGGTATAACGGTTAGTGTATGCAGATGGGATCCTTTAAATGCGTCAACCAGACGAATATGAGTTCCGTTGGTCGTTATTAAGAGAGCCTTTCCGTCAGAAGAAAATTGTAAACCGGTCCAAATGCATCCACTTGTTTCCATGCCCAATTTGAACGTAGCAAACGGTCCTTTATCAAAAGATCGTAGGTCGTAGAGTTTGACAGATTCGGAATTAATTCCCGCTGCAAATATCAATCCTTCTGGATCAAAAGCGGCTGTCGGTCGACCAGAAACATGCATTACACCATGGCAGTTGGGTGACCTCAAATCCCACAAACGAATAGTACTGTCCATTGAACCAAACAAGAAGGTGTCATCAATAGGTGACATACACAAAGAAACGACCCTTTTAGTGTGACTTTGGAAGTACCTGATATACTTGTTATCATGCAAAGAAAGGTAACGTATTGTATCTTGGGAATGTTAGCATCATAAAGTAATTACCATCAATCTTTGTAGAAGCGTGAATTGCAGTGGTCGGACTGTGAGTGAACTGTATTAAGTTTACTCCATACTTTTTGCTGTTGAGTGTACGTTTAAGTCTGTGGTCAAGTATGAGGACAT] [+] EMBL CD178670 [ACTATGAATGGCTGCGTTTGGTAACTGAGTAGCAGCTTCATAACCCGGTAGGCTTGCCACACGTACTCCAGTTTCAACAGACCAAATATGTACAATTCCGTCTGGCGAACCAATTAAAACAAACTGACTGTCTGGTGTAAAACTGGCATGTAATGTTTGTCTATCAGTATTTGGTATAACGGTTAGTGTATGCAGATGGGATCCTTTAAATGCGTCAACCAGACGAATATGAGTTCCGTTGGTCGTTATTAAGAGAGCCTTTCCGTCAGAAGAAAATTGTAAACCGGTCCAAATGCATCCACTTGTTTCCATGCCCAATTTGAACGTAGCAAACGGTCCTTTATCAAAAGATCGTAGGTCGTAGAGTTTGACAGATTCGGAATTAATTCCCGCTGCAAATATCAATCCTTCTGGATCAAAAGCGGCTGTCGGTCGACCAGAAACATGCATTACACCATGGCAGTTGGGTGACCT ] [+] EMBL CD194900 [ TCGGAATTAATTCCCGCTGCAAATATCAATCCTTCTGGATCAAAAGCGGCTGTCGGTCGACCAGAAACATGCATTACACCATGGCAGTTGGGTGACCTCAAATCCCACAAACGAATAGTACTGTCCATTGAACCAAACAAGAAGGTGTCATCAATAGGTGACATACACAAAGAAACGACCCTTTTAGTGTGACTTTGGAAGTACCTGATATACTTGTTATCATGCAAAGAAAGGTAACGTATTGTATCTTGGGAATGTTAGCATCATAAAGTAATTACCATCAATCTTTGTAGAAGCGTGAATTGCAGTGGTCGGACTGTGAGTGAACTGTATTAAGTTTACTCCATACTTTTTGCTGTTGAGTGTACGTTTAAGTCTGTGGTCAAGTATGAGGACAT] consensusID : consensus_9339#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 519 fasta sequence [TTTTTTTGTTTTTTTTTTTTTT---TTAGCGATTTAAAGTTTTCTGTTTAAGAGTAACATATTTACAAAAGTGAAAAGGAACAAGAAAGTTATGACACCACAGATAACTCATTTTTACTCTTCAAGAGCTGGAAGCCAGAACGATGTTTGGTTGGACCCTGTAGCTAGCATCGCGAACCGAGGATTAAAGGCGAGACTATGAATGGCTGCGTTTGGTAACTGAGTAGCAGCTTCATAACCCGGTAGGCTTGCCACACGTACTCCAGTTTCAACAGACCAAATATGTACAATTCCGTCTGGCGAACCAATTAAAACAAACTGACTGTCCGGTGTAAAACTGGCGATGTAATGTTTGTCTAT-CAGTATTTGGGTATAACGGTTAGTGTATGCAGATGGATTCCTTTAATGCGTCAANCAAACGATATAGTTCCGTTGGGGCGTTATTAAAGCCTCCGGGCGATTCCTTGGGCCTCGAGGCAATTTCCCCAAAGGGAGGCCGATTAATTTCCGAACAGGTCAAAT] [+] EMBL AI395048 [TTTTTTTGTATGTATTTTTTTT TTAGCGATTTAAAGTTTTCTGTTTAAGAGTAACATATTTACAAAAGTGAAAAGGAACAAGAAAGTTATGACACCACAGATAACTCATTTTTACTCTTCAAGAGCTGGAAGCCAGAACGATGTTTGGTTGGACCCTGTAGCTAGCATCGCGAACCGAGGATTAAAGGCGAGACTATGAATGGCTGCGTTTGGTAACTGAGTATCAGCTTCATAACCCGGTAGGCTTGCCACACGTACTCCAGTTTCAACAGACCAAATATGTACAATTCCGTCTGGGGAACCAATTAACACACACTGACTGTCCGGTGTAAAACTGG GATGTAAGGTTTGGCTAT CAGTATTTGGG ATAACGGTTAG ] [+] EMBL AI395452 [ TTTTTTTTTTTTTTGGGGTAGCGATTTAAAGTTTTCTGTTTAAGAGTAACATATTTACAAAAGTGAAAAGGAACAAGAAAGTTATGACACCACAGATAACTCATTTTTACTCTTCAAGAGCTGGAAGCCAGAACGATGTTTGGTTGGACCCTGTAGCTAGCATCGCGAACCGAGGATTAAAGGCGAGACTATGAATGGCTGCGTTTGGTAACTGAGTAGCAGCTTCATAACCCGGTAGGCTTGCCACACGTACTCCAGTTTCAACAGACCAAATATGTACAATTCCGTCTGGCGAACCAATTAAAACAAACTGACTGTCGGGTGTAAAACTGGCAATGT ATGTTTGTCTATNCAGTATTTGGGTATAACGGTTAGTGTATGCAGATGGATTCCTTTAATGCGTCAANCAAACGATATAGTTCCGTTGGGGCGTTATTAAAGCCTCCGGGCGATTCCTTGGGCCTCGAGGCAATTTCCCCAAAGGGAGGCCGATTAATTTCCGAACAGGTCAAAT] [+] EMBL AI395065 [ TTTTTTTTTTTTTT TTAGCGATTTAAAGTTTTCTGTTTAAGAGTAACATATTTACAAAAGTGAAAAGGAACAAGAAAGTTATGACACCACAGATAACTCATTTTTACTCTTCAAGAGCTGGAAGCCAGAACGATGTTTGGTTGGACCCTGTAGCTAGCATCGCGAACCGAGGATTAAAGGCGAGACTATGAATGGCTGCGTTTGGTAACTGAGTAGCAGCTTCATAACCCGGTAGGCTTGCCACACGTACTCCAGTTTCAACAGACCAAATATGTACAATTCCGTCTGGCGAACCAATTAAAACAAACTGACTGTCTGGTGTAAAACTGGC ATGTAATGTTTGTCTAT CAGTATTT GGTATAACGGTT ] [+] EMBL AI395101 [ TTTTTTTTTTTTTT TTAGCGATTTAAAGTTTTCTGTTTAAGAGTAACATATTTACAAAAGTGAAAAGGAACAAGAAAGTTATGACACCACAGATAACTCATTTTTACTCTTCAAGAGCTGGAAGCCAGAACGATGTTTGGTTGGACCCTGTAGCTAGCATCGCGAACCGAGGATTAAAGGCGAGACTATGAATGGCTGCGTTTGGTAACTGAGTAGCAGCTTCATAACCCGGTAGGCTTGCCACACGTACTCCAGTTTCAACAGACCAAATATGTTAAATTCCG ] consensusID : consensus_9339#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 448 fasta sequence [GTAAACCGGTCCAAATGCATCCACTTGTTTCCATGCCCAATTTGAACGTAGCAAACGGTCCTTTATCAAAAGATCGTAGGTCGTAGAGTTTGACAGATTCGGAATTAATTCCCGCTGCAAATATCAATCCTTCTGGATCAAAAGCGGCTGTCGGTCGACCAGAAACATGCATTACACCATGGCAGTTGGGTGACCTCAAATCCCACAAACGAATAGTACTGTCCATTGAACCAGACAAGAAGGTGTCATCAATAGGTGACATACACAAAGAAACGACCCTTTTAGTGTGACTTTGGAAGTACCTGATATACTTGTTATCATGCAAAGAAAGGTAACGTATTGTATCATCAATCTTTGTAGAAGCGTGAATTGCAGTGGTCGGACTGTGAGTGAACTGTATTAAGTTTACTCCATACTTTTTGCTGTTGAGTGTACGTTTAGGTGTTCC] [+] EMBL CD098042 [GTAAACCGGTCCAAATGCATCCACTTGTTTCCATGCCCAATTTGAACGTAGCAAACGGTCCTTTATCAAAAGATCGTAGGTCGTAGAGTTTGACAGATTCGGAATTAATTCCCGCTGCAAATATCAATCCTTCTGGATCAAAAGCGGCTGTCGGTCGACCAGAAACATGCATTACACCATGGCAGTTGGGTGACCTCAAATCCCACAAACGAATAGTACTGTCCATTGAACCAGACAAGAAGGTGTCATCAATAGGTGACATACACAAAGAAACGACCCTTTTAGTGTGACTTTGGAAGTACCTGATATACTTGTTATCATGCAAAGAAAGGTAACGTATTGTATCATCAATCTTTGTAGAAGCGTGAATTGCAGTGGTCGGACTGTGAGTGAACTGTATTAAGTTTACTCCATACTTTTTGCTGTTGAGTGTACGTTTAGGTGTTCC] [+] EMBL CD097813 [GTAAACCGGTCCAAATGCATCCACTTGTTTCCATGCCCAATTTGAACGTAGCAAACGGTCCTTTATCAAAAGATCGTAGGTCGTAGAGTTTGACAGATTCGGAATTAATTCCCGCTGCAAATATCAATCCTTCTGGATCAAAAGCGGCTGTCGGTCGACCAGAAACATGCATTACACCATGGCAGTTGGGTGACCTCAAATCCCACAAACGAATAGTACTGTCCATTGAACCAGACAAGAAGGTGTCATCAATAGGTGACATACACAAAGAAACGACCCTTTTAGTGTGACTTTGGAAGTACCTGATATACTTGTTATCATGCAAAGAAAGGTAACGTATTGTATCATCAATCTTTGTAGAAGCGTGAATTGCA ] consensusID : consensus_9339#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 346 fasta sequence [TAAAATTAATAACTTGATTTATGATATCTGTTTTCATTAGTCACCAACGTGAAACTCTTCCGGCACACCGTGAGCTGGTTACATTTTGTTACATAATTTTCATATTATTCGGTGGTTTAGCATCACGCATCTCTAATAATACAACATGAATTGAAAATGCATTTTCCCAAAAACGTAAGAATGGTTAGCGATTTAAAGTTTTCTGCTTAAGAGTAACATATTTACAAAAGTGAAAAGGAACAAGAAAGTTATGACACCACAGATAACTCATTTTTACTCTTCAAGAGCTGGAAGCCAGAACGATGTTTGGTTGGACCCTGTAGCTAGCATCGCGAACCGAGGATTA] [+] EMBL CD137023 [TAAAATTAATAACTTGATTTATGATATCTGTTTTCATTAGTCACCAACGTGAAACTCTTCCGGCACACCGTGAGCTGGTTACATTTTGTTACATAATTTTCATATTATTCGGTGGTTTAGCATCACGCATCTCTAATAATACAACATGAATTGAAAATGCATTTTCCCAAAAACGTAAGAATGGTTAGCGATTTAAAGTTTTCTGCTTAAGAGTAACATATTTACAAAAGTGAAAAGGAACAAGAAAGTTATGACACCACAGATAACTCATTTTTACTCTTCAAGAGCTGGAAGCCAGAACGATGTTTGGTTGGACCCTGTAGCTAGCATCGCGAACCGAGGATTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9339#1 ------------------------------------------------------------ consensus_9339#3 ------------------------------------------------------------ consensus_9339#0 ACTATGAATGGCTGCGTTTGGTAACTGAGTAGCAGCTTCATAACCCGGTAGGCTTGCCAC 60 consensus_9339#2 ------------------------------------------------------------ consensus_9339#1 ------------------------------------------------------------ consensus_9339#3 ------------------------------------------------------------ consensus_9339#0 ACGTACTCCAGTTTCAACAGACCAAATATGTACAATTCCGTCTGGCGAACCAATTAAAAC 120 consensus_9339#2 ------------------------------------------------------------ consensus_9339#1 ------------------------------------------------------------ consensus_9339#3 ------------------------------------------------------------ consensus_9339#0 AAACTGACTGTCTGGTGTAAAACTGGCATGTAATGTTTGTCTATCAGTATTTGGTATAAC 180 consensus_9339#2 ------------------------------------------------------------ consensus_9339#1 ------------------------------------------------------TTTTTT 6 consensus_9339#3 ------------------------------------------------------------ consensus_9339#0 GGTTAGTGTATGCAGATGGGATCCTTTAAATGCGTCAACCAGACGAATATGAGTTCCGTT 240 consensus_9339#2 ------------------------------------------------------------ consensus_9339#1 TGTTTTTTTTTTTTTTTTAGCGATTTAAAGTTTTCTGTTTAAGAGTAACATATTTACAAA 66 consensus_9339#3 ------------------------------------------------------------ consensus_9339#0 GGTCGTTATTAAGAGAGCCTTTCCGTCAGAAGAAAATTGTAAACCGGTCCAAATGCATCC 300 consensus_9339#2 --------------------------------------GTAAACCGGTCCAAATGCATCC 22 consensus_9339#1 AGTGAAAAGGAACAAGAAAGTTATGACACCACAGATAACTCATTTTTACTCTTCAAGAGC 126 consensus_9339#3 ------------------------------------------------------TAAAAT 6 consensus_9339#0 ACTTGTTTCCATGCCCAATTTGAACGTAGCAAACGGTCCTTTATCAAAAGATCGTAGGTC 360 consensus_9339#2 ACTTGTTTCCATGCCCAATTTGAACGTAGCAAACGGTCCTTTATCAAAAGATCGTAGGTC 82 * consensus_9339#1 TGGAAGCCAGAACGATGTTTGGTTGGACCCTGTAGCTAGCATCGCGAACCGAGGATTAAA 186 consensus_9339#3 TAATAACTTGATTTATGAT-ATCTGTTTTCATTAGTCACCAACGTGAAACT----CTTCC 61 consensus_9339#0 GTAGAGTTTGACAGATTCGGAATTAATTCCCGCTGCAAATATCAATCCTTCTGGATCAAA 420 consensus_9339#2 GTAGAGTTTGACAGATTCGGAATTAATTCCCGCTGCAAATATCAATCCTTCTGGATCAAA 142 * ** ** * * * * * * consensus_9339#1 GGCGAGACTATGAA-TGGCTGCGT---TTGGTAACTGAGTAGCAGCTTCATAACCCGGTA 242 consensus_9339#3 GGC-ACACCGTGAGCTGGTTACAT---TTTGTTAC---ATAATTTTCATATTATTCGGTG 114 consensus_9339#0 AGC--GGCTGTCGGTCGACCAGAAACATGCATTACACCATGGCAGTTGGGTGACCTCAAA 478 consensus_9339#2 AGC--GGCTGTCGGTCGACCAGAAACATGCATTACACCATGGCAGTTGGGTGACCTCAAA 200 ** * * * * * ** * * * consensus_9339#1 GGCTTGCCACACGTACTCCAGTTTCAACAGACCAAATATGTACAATTCCGTCTGGCGAAC 302 consensus_9339#3 GTTTAGCATCACGCATCTCTAAT--AATACAACATGAATTGAAAATGCATTTTCCCAAAA 172 consensus_9339#0 TCCCACAAACGAATAGTACTGTC--CATTGAACCAAACAAGAAGGTGTCATCAATAGGTG 536 consensus_9339#2 TCCCACAAACGAATAGTACTGTC--CATTGAACCAGACAAGAAGGTGTCATCAATAGGTG 258 * * * * * * * * * consensus_9339#1 CAATTAAAACAA--ACTGACTGTCCGGTGTAAAACTGGCGATG----TAATGTTTGTCTA 356 consensus_9339#3 ACGTAAGAATGGTTAGCGATTTAAAGTTTTCTGCTTAAGAGTA----ACATATTTACAAA 228 consensus_9339#0 ACATACACAAAGAAACGACCCTTTTAGTGTGACTTTGGAAGTACCTGATATACTTGTTAT 596 consensus_9339#2 ACATACACAAAGAAACGACCCTTTTAGTGTGACTTTGGAAGTACCTGATATACTTGTTAT 318 * * * * * * * ** ** consensus_9339#1 TCAGTATTTGGGTATAACGGTTAGTGTAT-------------------GCAGATGGATTC 397 consensus_9339#3 AGTGAAAAGGAACAAGAAAGTTATGACACC------------------ACAGATAACTCA 270 consensus_9339#0 CATGCAAAGAAAGGTAACG--TATTGTATCTTGGGAATGTTAGCATCATAAAGTAATTAC 654 consensus_9339#2 CATGCAAAGAAAGGTAACG--TATTGTATC------------------------------ 346 * * * ** * consensus_9339#1 CTTTAATGCGT-CAANCAAACGATATAGTTCCGTTGGGGCGTTATTAAAGCCTCCGGGCG 456 consensus_9339#3 TTTTTACTCTT-CAAGAGCTGGA---AGCCAGAACGATGTTTGGTTGGACCCTGTAGCTA 326 consensus_9339#0 CATCAATCTTTGTAGAAGCGTGAATTGCAGTGGTCGGACTGTGAGTGAACTGTATTAAGT 714 consensus_9339#2 -ATCAATCTTTGTAGAAGCGTGAATTGCAGTGGTCGGACTGTGAGTGAACTGTATTAAGT 405 * * * * ** * * * * * consensus_9339#1 ATTCCTTGGGCCTCGAGGCAATTTCCCCAAAGGGAGGCCGATTAATTTCCGAACAGGTCA 516 consensus_9339#3 GCATCGCGAACCGAGGATTA---------------------------------------- 346 consensus_9339#0 TTACTCCATACTTTTTGCTGTTGAGTGTACGTTTAAGTCTGTGGTCAAGTATGAGGACAT 774 consensus_9339#2 TTACTCCATACTTTTTGCTGTTGAGTGTACGTTTAGGTGTTCC----------------- 448 * consensus_9339#1 AAT 519 consensus_9339#3 --- consensus_9339#0 --- consensus_9339#2 --- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||