These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9349#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1060 fasta sequence [TCGGTCTTATCGTCTAAATCACAGTTAATAACTGGATTACAGAGTCGTAATAGTGTAGCTGGTAACCGAAGGCCTATATCATCAATGAACACTTCAAATCGTCGAGAATCTACATCTAA-TTTACA-AACATTACA-GCGTTTAATCAAGGAAAAAGAAGCGCATATTGAGCAACTTTTACAGGAACGTGAAATGGAACGTTCTGATTTAGCCAAAGTTACTTTAGAAAGAGAAATGGCTCAAGCTGAAACATTGAATCAACGAGCTGTGATACAACAATTGAACCAACAATTAGAAAATATGGAAGCTGTTCTTCAACATTTACGCGATGAACATGAGCAAACAACGATTAAGCTACATGAAGAACGAAAAAATCTTGAAGATTTACAATTTCGAATAGAAGAAGAAAACATTGACAAGAGCACAGTTGAATCACAGAATGCAGACGATGAATCGAAAATATTTGAACTGGAAGAAGCTTTAATGTCAGCTCGTGAAACGAATGAACGTATGGAATTAGAATTAAATAAATTACGAATAGAATTAAATGATCTTTTACAAAAACAAAC-AA-AGCGTTAGATGAAAATAATGAAAACAAATCACAAATCCAGGGAAAACCATCTCTTCAATTCACTGGACTTGTATCTGAGACATCTATTATTCCAACTGAAAACGAAGGCGAGTCTTTACAAAATGAATGTGAACGGTTACGTCATTTGTTGGCTGAGCGTCAGACTGAAGCAGAAATTATGCTAAAGCATCAAGCTGAAACAATTGAGTCATTAACTGTTGAGTTTAATGGACAAGTTGAAAAACTAAATTGTCAGTTGCAGAATTCTTCAAATGAAATTCAGACCTTCAAAAACGAGAATAACCTACTGAAACAACAGAATAATGAATTAGTCCTAGGTCTAAAGAGTCAAATTGATCAGTTAAATGAACAATTGGCAGAACAGGAAAAAATTGCTAGTGAAAAATTATCCATGTTTGAAAATCGGATTAAGGAGTTGAATGATTTATTAGAAGCAGAGAAAACCAAATCAACCTCATCTTCTAATGAGTC] [+] EMBL CD068216 [TCGGTCTTATCGTCTAAATCACAGTTAATAACTGGATTACAGAGTCGTAATAGTGTAGCTGGTAACCGAAGGCCTATATCATCAATGAACACTTCAAATCGTCGAGAATCTACATCTAACTTTACACAACATTACACGCGTTTAATCA ] [+] EMBL CD194880 [ GTAGCTGGTAACCGAAGGCCTATATCATCAATGAACACTTCAAATCGTCGAGAATCTACATCTAA TTTGCA AACATTACA GCGTTTAATCAAGGAAAAAGAAGCGCATATTGAGCAACTTTTACAGGAACGTGAAATGGAACGTTCTGATTTAGCCAAAGTTACTTTAGAAAGAGAAATGGCTCAAGCTGAAACATTGAATCAACGAGCTGTGATACAACAATTGAACCAACAATTAGAAAATATGGAAGCTGTTCTTCAACATTTACGCGATGAACATGAGCAAACAACGATTAAGCTACATGAAGAACGAAAAAATCTTGAAGATTTACAATTTCGAATAGAAGAAGAAAACATTGACAAGAGCACAGTTGAATCACAGAATGCAGACGATGAATCGAAAATATTTGAACTGGAAGAAGCTTTAATGTCAGCTCGTGAAACGAATGAACGTATGGAATTAGAATTAAATAAATTACGAATAGAATTAAATGATCTTTTACAAAAACAAAC AA AGCGTTAGATGAAAATAATGAAAACAAATCACANATCCAGGGAANACCATCTCTTCAATTCACTGGACT ] [+] EMBL CD169994 [ TGTGATACAACAATTGAACCAACAATTAGAAAATATGGAAGCTGTTCTTCAACATTTACGCGATGAACATGAGCAAACAACGATTAAGCTACATGAAGAACGAAAAAATCTTGAAGATTTACAATTTCGAATAGAAGAAGAAAACATTGACAGGAGCACAGTTGAATCACAGAATGCAGACGATGAATCGAAAATATTTGAACTGGAAGAAGCTTTAATGTCAGCCCATGAAA ] [+] EMBL CD121205 [ TCGTGAAACGAATGAACGTATGGAATTAGAATTAAATAAATTACGAATAGAATTAAATGATCTTTTACAAAAACAAACAAA AGCGTTAGATGAAAATAATGAAAACAAATCACAAATCCAGGGAAAACCATCTCTTCAATTCACTGGACTTGTATCTGTGACATCTATTATTCCAACTGAAAACGAAGGCGAGTCTTTACAAAATGAATGTGAACGGTTACGTCATTTGTTGGCTGAGCGTTAGACTGAAGCAGAAATTATGCTAAAGCATCAAGCTGAAACAATTGAGTCATTAACTGTTGAGTTTAATGGACAAGTTGAAAAACTAAATTGTCAGTTGCAGAATTCTTCAAATGAAATTCAGACCTTCAAAAACGAGAATAACCTACTGAAACAACAGAATAATGAATTAGTCCTAGGTCTAAAGAGTCAAATTGATCAGTTAAATGAACAATTGGCAGAACAGGAAAAAATTGCTAGTGAAAAATTATCCATGTTTGAAAATCGGATTAAGGAGTTGAATGATTTATTAGAAGCAGAGAAAACCAAATCAACCTCATCTTCTAAT ] [-] EMBL CD121754 [ CGTGAAACGAATGAACGTATGGAATTAGAATTAAATAAATTACGAATAGAATTAAATGATCTTTTACAAAAACAAAC AANAGCGTTAGATGAAAATAATGAAAACAAATCACAAATCCAGGGAAAACCATCTCCTCAATTCACTGGACTTGTATCTGAGACATCTATTATTCCAACTGAAAACGAAGGCGAGTCTTTACAAAATGAATGTGTACGGTTACGTCATTTGTTGGCTGAGCGTCAGACTGAAGCAGAAATTATGCTAAAGCATCAAGCTGAAACAATTGAGTCATTAACTGTTGAGTTTAATGGACAAGTTGAAAAACTAAATTGTCAGTTGCAGAATTCTTCAAATGAAATTCAGACCTTCAAAAACGAGAATAACCTACTGAAACAACAGAATAATGAATTAGTCCTAGGTCTAAAGAGTCAAATTGATCAGTTAAATGAACAATTGGCAGAACAGGAAAAAATTGCTAGTGAAAAATTATCCATGTTTGAAAATCGGATTTAGGAGTTGAATGATTTATTAGAAGCAGAGAAAACCAAATCAACCTCATCTTCTAATGAGTC] [+] EMBL CD171056 [ ca AA AGCGTTAGATGAAAATAATGAAAACAAATCACAAATCCAGGGAAAACCATCTCTTCAATTCACTGGACTTGTATCTGAGACATCTATTATTCCAACTGAAAACGAAGGCGAGTCTTTACAAAATGAATGTGAACGGTTACGTCATTTGTTGGCTGAGCGTCAGACTGAAGCAGAAATTATGCTAAAGCATCAAGCTGAAACAATTGAGTCATTAACTGTTGAGTTTAATGGACAAGTTGAAAAACTAAATTGTCAGTTGCAGAATTCTTCAAATGAAATTCAGACCTTCAAAAACGAGAATAACCTACTGAAACAACAGAATAATGAATTAGTCCTAGGTCTAAAGAGTCAAATTGATCAGTTAAATGAACAATTGGCAGAACAGGAAAAAATTGCTAGTGAAAAATTATCCAT ] consensusID : consensus_9349#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 614 fasta sequence [AATATCCATGTTGAAGATCGCATAAGGAGTGAATGATTATTAGAAGCAGAGAGAACCAAATCAACCTCATCTTCTAATGAGTCCCAGATGACCAGTGGAGATTTAAAGAAACTAAAAGACCAACAAAATGCAACAATGGAAGGGTTAACTGATTATCAGAATGATGTTTTATCGGCTGTGGAATCCATTCATGCTGTACAAATAGAAGAAGTGAATAATTTGCAATCAATTAACAAAATCACTAATAATGATATTAATACTGTATCGAATGAAGAGACTATTCAGTTATTATTGGAAAAACTTAAATTACAAGAAGAACTATTCAATGAACAAAAAGATCAATTGGTTAATATTCAACGACAAACTATAACACTGAATCAAGATAAAGAGAATTCTGACAATAAACTTAATGAAATTGAAAATTATTTAGATAAGTTAAAAATACAGTTGAATGAATCTAGAATAAAACAAGAAGAAGTACTTACTGAATTAAACAGTGCCCATTTGAAACGTGATCAATTAGTTGAGGATATTTCTAAAGTTCTAGGTGATTTATCTATAACTGAAAATGAAGAGGATTTATCACCAATTTTATGTAAACGTATTAATGATTT] [-] EMBL CD195861 [AATATCCATGTTGAAGATCGCATAAGGAGTGAATGATTATTAGAAGCAGAGAGAACCAAATCAACCTCATCTTCTAATGAGTCCCAGATGACCAGTGGAGATTTAAAGAAACTAAAAGACCAACAAAATGCAACAATGGAAGGGTTAACTGATTATCAGAATGATGTTTTATCGGCTGTGGAATCCATTCATGCTGTACAAATAGAAGAAGTGAATAATTTGCAATCAATTAACAAAATCACTAATAATGATATTAATACTGTATCGAATGAAGAGACTATT ] [+] EMBL CD171407 [ ATGCTGTACAAATAGAAGAAGTGAATAATTTGCAATCAATTAACAAAATCACTAATAATGATATTAATACTGTATCGAATGAAGAGACTATTCAGTTATTATTGGAAAAACTTAAATTACAAGAAGAACTATTCAATGAACAAAAAGATCAATTGGTTAATATTCAACGACAAACTATAACACTGAATCAAGATAAAGAGAATTCTGACAATAAACTTAATGAAATTGAAAATTATTTAGATAAGTTAAAAATACAGTTGAATGAATCTAGAATAAAACAAGAAGAAGTACTTACTGAATTAAACAGTGCCCATTTGAAACGTGATCAATTAGTTGAGGATATTTCTAAAGTTCTAGGTGATTTATCTATAACTGAAAATGAAGAGGATTTATCACCAATTTTATGTAAACGTATTAATGATTT] consensusID : consensus_9349#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 389 fasta sequence [CGCGATGAACATGAGCAAACAACGATTAAGCTACATGAAGAACGAAAAAATCTTGAAGATTTACAATTTCGAATAGAAGAGGAAAACATTGACAAGAGCACAGTTGAATCACAGAATGCAGACGATGAATCGAAAATATTTGAACTGGAAGAAGCTTTAATGTCAGCACGTGAAATGGAACGTTCTGATTTAGCCAAAGTTACTTTAGAAAGAGAAATGGCTCAAGCTGAAACATTGAATCAACGAGCTGTGATACAACAATTGAACCAACAATTAGAAAATATGGAAGCTGTTCTTCAACATTTACGCGATGAACATGAGCAAACAACGATTAAGCTACATGAAGAACGAAAAAATCTTGAAGATTTACAATTTCGAATAGAAGAAGA] [+] EMBL CD190359 [CGCGATGAACATGAGCAAACAACGATTAAGCTACATGAAGAACGAAAAAATCTTGAAGATTTACAATTTCGAATAGAAGAGGAAAACATTGACAAGAGCACAGTTGAATCACAGAATGCAGACGATGAATCGAAAATATTTGAACTGGAAGAAGCTTTAATGTCAGCACGTGAAATGGAACGTTCTGATTTAGCCAAAGTTACTTTAGAAAGAGAAATGGCTCAAGCTGAAACATTGAATCAACGAGCTGTGATACAACAATTGAACCAACAATTAGAAAATATGGAAGCTGTTCTTCAACATTTACGCGATGAACATGAGCAAACAACGATTAAGCTACATGAAGAACGAAAAAATCTTGAAGATTTACAATTTCGAATAGAAGAAGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9349#0 TCGGTCTTATCGTCTAAATCAC-AGTTAATAACTGGATTACAGAGT-CGTAATAGTGTAG 58 consensus_9349#2 ----------CGCGATGAACATGAGCAAACAAC--GATTA-AGCTA-CATGA-AGAACGA 45 consensus_9349#1 ---------------------------AATATCCATGTTGAAGATCGCATAA-GGAGTGA 32 ** * * ** ** * * * * consensus_9349#0 CTGGTAACCGAAGGCCTATATCATCAATGAACACTTCAAATCGTCGAGAATC-TACATCT 117 consensus_9349#2 AAAAATCTTGAAGATTTACAATTTCGAATAGAAGAGGAAAACATTGACAAGAGCACAGTT 105 consensus_9349#1 ATGATTATTAGAAGCAGAGAGAACCAAATCA-ACCTCATCTTCTAATGAGTC--CCAGAT 89 * * * * * * * * * ** * consensus_9349#0 AATTTACAAACATT-ACAGCGTTTAATCAAGGAAAAAGAAGCGCATATTGAGCAACTTTT 176 consensus_9349#2 GAATCACAGA-ATG-CAGACGATGAATC----GAAAATATTTGAACTGGAAGAAGCTTTA 159 consensus_9349#1 GACCAGTGGAGATTTAAAGAAACTAAAAGACCAACAAAATGCAACAATGGAAGGG--TTA 147 * * ** ** * ** * * ** consensus_9349#0 ACA--GGAACGTGAAATGGAACGTTCTGATTTAGCCAAAGTTACTTTAGAAAGAGAAATG 234 consensus_9349#2 ATGTCAGCACGTGAAATGGAACGTTCTGATTTAGCCAAAGTTACTTTAGAAAGAGAAATG 219 consensus_9349#1 ACT--GATTATCAGAATGATGTTTTATCGGCT-GTGGAATCCATTCATGCTGTACAAATA 204 * **** ** * * * ** * * * * **** consensus_9349#0 GCTCAAGCTGAAACATTG-AATCAACGAGCTGTGATAC-AACAATTGAACCAACAAT-TA 291 consensus_9349#2 GCTCAAGCTGAAACATTG-AATCAACGAGCTGTGATAC-AACAATTGAACCAACAAT-TA 276 consensus_9349#1 GAAGAAGTGAATAATTTGCAATCAATTAACAAAATCACTAATAATGATATTAATACTGTA 264 * *** * * *** ****** * * ** ** *** * ** * * ** consensus_9349#0 GAAAATATGGAAGCTGTTCTTCAACATTTACGCGATGAACATGAGCAAACAACGATTAAG 351 consensus_9349#2 GAAAATATGGAAGCTGTTCTTCAACATTTACGCGATGAACATGAGCAAACAACGATTAAG 336 consensus_9349#1 TCGAATGAAGAGACTAT---TCAGTTATTATTGGAAAAACTTAAATTA-CAAGAA--GAA 318 *** ** ** * *** *** ** *** * * * *** * * consensus_9349#0 CTACATGAAGAACGAAAAAATCTTGAAGATTTACAATTTCGAATAGAAGAAGAAAACATT 411 consensus_9349#2 CTACATGAAGAACGAAAAAATCTTGAAGATTTACAATTTCGAATAGAAGAAGA------- 389 consensus_9349#1 CTATTCAATGAACAAAAAGATC----AATTGGTTAATATTCAACGACAAACTATAACACT 374 *** * **** **** *** * * *** * ** * * * consensus_9349#0 GACAAGAGCACAGTTGAATCACAGAATGCAGACGATGAATCGAAAATATTTGAACTGGAA 471 consensus_9349#2 ------------------------------------------------------------ consensus_9349#1 GA----ATCAAGATAAAG----AGAATTCTGACAATAAACTTAATGAAATTGAA------ 420 consensus_9349#0 GAAGCTTTAATGTCAGCTCGTGAAACGAATGAACGTATGGA-ATTAGAATTAAATAAATT 530 consensus_9349#2 ------------------------------------------------------------ consensus_9349#1 -AATTATTTAGATAAGTTAAAAATACAGTTGAATGAATCTAGAATAAAACAAGAAGAAGT 479 consensus_9349#0 ACGAATAGAATTAAATGATCTTTTACAAAAACAAACAAAGCGTTAGATGAAAATAATGAA 590 consensus_9349#2 ------------------------------------------------------------ consensus_9349#1 ACTTACTGAATTAAACAGTGCC---------CATTTGAAACGT--GATCAATTAGTTGAG 528 consensus_9349#0 AACAAATCACAAATCCAGGGAAAACCATCTCTTCAATTCACTGGACTTGTATCTGAGACA 650 consensus_9349#2 ------------------------------------------------------------ consensus_9349#1 GATATTTCTAAAGTTCTAGGTGATTTATCTA------TAACTGAAAATGAAGAGGATTTA 582 consensus_9349#0 TCTATTATTCCAACTGAAAACGAAGGCGAGTCTTTACAAAATGAATGTGAACGGTTACGT 710 consensus_9349#2 ------------------------------------------------------------ consensus_9349#1 TCACCAATTTTATGTAAACGTATTAATGATTT---------------------------- 614 consensus_9349#0 CATTTGTTGGCTGAGCGTCAGACTGAAGCAGAAATTATGCTAAAGCATCAAGCTGAAACA 770 consensus_9349#2 ------------------------------------------------------------ consensus_9349#1 ------------------------------------------------------------ consensus_9349#0 ATTGAGTCATTAACTGTTGAGTTTAATGGACAAGTTGAAAAACTAAATTGTCAGTTGCAG 830 consensus_9349#2 ------------------------------------------------------------ consensus_9349#1 ------------------------------------------------------------ consensus_9349#0 AATTCTTCAAATGAAATTCAGACCTTCAAAAACGAGAATAACCTACTGAAACAACAGAAT 890 consensus_9349#2 ------------------------------------------------------------ consensus_9349#1 ------------------------------------------------------------ consensus_9349#0 AATGAATTAGTCCTAGGTCTAAAGAGTCAAATTGATCAGTTAAATGAACAATTGGCAGAA 950 consensus_9349#2 ------------------------------------------------------------ consensus_9349#1 ------------------------------------------------------------ consensus_9349#0 CAGGAAAAAATTGCTAGTGAAAAATTATCCATGTTTGAAAATCGGATTAAGGAGTTGAAT 1010 consensus_9349#2 ------------------------------------------------------------ consensus_9349#1 ------------------------------------------------------------ consensus_9349#0 GATTTATTAGAAGCAGAGAAAACCAAATCAACCTCATCTTCTAATGAGTC 1060 consensus_9349#2 -------------------------------------------------- consensus_9349#1 -------------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||