These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_935#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 485 fasta sequence [TAGATATGAAAAAGAAAATAGGAAATAATTCCAGTCAAACACGCATAAATTTGAGTGCATCTGTGTGCGTGTGATCAGTTAGAAGGGGAGGCGGTAAATATCTCAGTCGAAAGTGTTTTGTTATTGTCATGATAAATGGTCATCTTTTGTGAAATTCTACGCACATGTGTTATAACAAAAATTCAGCCACATAATAGTGCATGTGCGTGTGTAAATGAGGAAGATACAAAGTTGTCTTAATGATAGAGGAAAAAAGTGTGCGTGAGCAGTTTATTTGTTACATTTATTATTACTATTACCATTATTAATGTTGCTGTTTGCAGCGGTAGATATATGACTATTTAATGTACGCCGCTTTTTTGGTTGATGTGAATAAATAGTGAAATAAAAGAGCGAGGAATAAGTCCTGACCTGATCTAGCATTTTTTCCTCAATATAAGACATANATGTAAAGAATGAATAAGCAGGATAATGAAGGAGAAAAT] [+] EMBL CD158942 [TAGATATGAAAAAGAAAATAGGAAATAATTCCAGTCAAACACGCATAAATTTGAGTGCATCTGTGTGCGTGTGATCAGTTAGAAGGGGAGGCGGTAAATATCTCAGTCGAAAGTGTTTTGTTATTGTCATGATAAATGGTCATCTTTTGTGAAATTCTACGCACATGTGTTATAACAAAAATTCAGCCACATAATAGTGCATGTGCGTGTGTAAATGAGGAAGATACAAAGTTGTCTTAATGATAGAGGAAAAAAGTGTGCGTGAGCAGTTTATTTGTTACATTTATTATTACTATTACCATTATTAATGTTGCTGTTTGCAGCGGTAGATATATGACTATTTAATGTACGCCGCTTTTTTGGTTGATGTGAATAAATAGTGAAATAAAAGAGCGAGGAATAAGTCCTGACCTGATCTAGCATTTTTTCCTCAATATAAGACATANATGTAAAGAATGAATAAGCAGGATAATGAAGGAGAAAAT] consensusID : consensus_935#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 299 fasta sequence [AATATCTCAGTCGAAAGTGTTTTGTTATTGTCATGATAAATGGTCATCTTTTGTGAAATTCTATGCACATGTGTTATAACAAAAATTCAGCCACATAATAGTGCATGTGCGTGTGTAAATGAGGAAGATACAAAGTTGTCTTAATGATAGAGGAAAAAAGTGTGCGTGAGCAGTTTATTTGTTACATTTATTATTACTATTACCATTATTAATGTTGCTGTTTGCAGCGGTAGATATATGACTATTTAATGTACGCCGCTTTTTTGGTTGATGTGAATAAATAGTCTGATTGCCTTCCA] [-] EMBL CD178422 [AATATCTCAGTCGAAAGTGTTTTGTTATTGTCATGATAAATGGTCATCTTTTGTGAAATTCTATGCACATGTGTTATAACAAAAATTCAGCCACATAATAGTGCATGTGCGTGTGTAAATGAGGAAGATACAAAGTTGTCTTAATGATAGAGGAAAAAAGTGTGCGTGAGCAGTTTATTTGTTACATTTATTATTACTATTACCATTATTAATGTTGCTGTTTGCAGCGGTAGATATATGACTATTTAATGTACGCCGCTTTTTTGGTTGATGTGAATAAATAGTCTGATTGCCTTCCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_935#0 TAGATATGAAAAAGAAAATAGGAAATAATTCCAGTCAAACACGCATAAATTTGAGTGCAT 60 consensus_935#1 ------------------------------------------------------------ consensus_935#0 CTGTGTGCGTGTGATCAGTTAGAAGGGGAGGCGGTAAATATCTCAGTCGAAAGTGTTTTG 120 consensus_935#1 ------------------------------------AATATCTCAGTCGAAAGTGTTTTG 24 ************************ consensus_935#0 TTATTGTCATGATAAATGGTCATCTTTTGTGAAATTCTACGCACATGTGTTATAACAAAA 180 consensus_935#1 TTATTGTCATGATAAATGGTCATCTTTTGTGAAATTCTATGCACATGTGTTATAACAAAA 84 *************************************** ******************** consensus_935#0 ATTCAGCCACATAATAGTGCATGTGCGTGTGTAAATGAGGAAGATACAAAGTTGTCTTAA 240 consensus_935#1 ATTCAGCCACATAATAGTGCATGTGCGTGTGTAAATGAGGAAGATACAAAGTTGTCTTAA 144 ************************************************************ consensus_935#0 TGATAGAGGAAAAAAGTGTGCGTGAGCAGTTTATTTGTTACATTTATTATTACTATTACC 300 consensus_935#1 TGATAGAGGAAAAAAGTGTGCGTGAGCAGTTTATTTGTTACATTTATTATTACTATTACC 204 ************************************************************ consensus_935#0 ATTATTAATGTTGCTGTTTGCAGCGGTAGATATATGACTATTTAATGTACGCCGCTTTTT 360 consensus_935#1 ATTATTAATGTTGCTGTTTGCAGCGGTAGATATATGACTATTTAATGTACGCCGCTTTTT 264 ************************************************************ consensus_935#0 TGGTTGATGTGAATAAATAGTGAAATAAAAGAGCGAGGAATAAGTCCTGACCTGATCTAG 420 consensus_935#1 TGGTTGATGTGAATAAATAGTCTGATTGCCTTCCA------------------------- 299 ********************* ** * consensus_935#0 CATTTTTTCCTCAATATAAGACATANATGTAAAGAATGAATAAGCAGGATAATGAAGGAG 480 consensus_935#1 ------------------------------------------------------------ consensus_935#0 AAAAT 485 consensus_935#1 ----- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||