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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9361#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1117 fasta sequence
[TCGAGCCAANAATTCGGCACGAGGATTATCAAAGAAAATTTAAATAACATCACAGATAATGGTTTCAAGAAACCTGAAGGGAAACTCAAAACTCTAAACTTAATTCCTGACAGTGTACATCTTGTTGTAGTAAGCAAATTATCCATTCCAAAAATTATTCGTGTAAACTTACCACATCGTTCAAAAAATCTGTCTATCTGTTTGATAGTTAAAGATTTTCGCAAAGATGATTATGAACGCACTACAGAATCTTGGAAACGACGTTGGAATATGGATTTGAAAAAGTCAGAACTTTCTCACTTGGACGCACCTGAAGTGACATTTTTACCTCTGCGTGAATTAAAAGTAGCTTACCAAACTTTTGCCGCCAAACGTCGACTGGCTGGCACTTTTGATATATTTCTTGCCGACAAACGAATCGTTCATCGTTTACAAAATAAACTGGGTAAAGCATTCTACCAGGAGGTTTCAGGGAAATTCCCTATCCCAACGTCATTTTCGAAAAACAATCTTGTAGATACTGTTAGAGAGCAACTACATACATCTTTGTTTGTAATTCGAGGCCATGGGACAACTGATAGTCTCATAATTGGGGATGATCTTTTCTCTTCATCCGAGCTAAAGGAG-AATGTAATATCCGTTTGTGAAAAAATCTGTTCAGAATGGCCAGGTGGTGGTATGGCGAATATCCGTTCTATTTACATTCAGAGCTCAGGTATCTCTATTCCTTTGTACTACGATGAAACAGAAGCACCTTTAACCACAATAAGTGAAAAGTTATCGAGTCTTCCTAAATCTGCCCATCGAAGATCTTATGCACTTATTAAGAAACTTAAAAGCTCAGAGGATGGTGTGCCAATCGTTAGTCAACCTAAAAAGTCTCAAAAACCACTTAAAAGATTACCGAAAGAACTCGTTTCACAAATTGCAGATGATCTTCCTTTGACATCAGATGAAATCGACAAAATTTTACGCAAACGGAACTTCGAAGATAGTAGCATCCCTCAAATAAAGTTAAGACGAAATAAAAGGATTTCACGTCGTAAATTTGCAAAAATATAGTTCATTCTTGTCAACGTTACTTTTTCTTTTAGGACAGTTTTACAATAAATTAGTA]
[+] EMBL CD082614 [TCGAGCCAANAATTCGGCACGAGGATTATCAAAGAAAATTTAAATAACATCACAGATAATGGTTTCAAGAAACCTGAAGGGAAACTCAAAACTCTAAACTTAATTCCTGACAGTGTACATCTTGTTGTAGTAAGCAAATTATCCATTCCAAAAATTATTCGTGTAAACTTACCACATCGTTCAAAAAATCTGTCTATCTGTTTGATAGTTAAAGATTTTCGCAAAGATGATTATGAACGCACTACAGAATCTTGGAAACGACGTTGGAATATGGATTTGAAAAAGTCAGAACTTTCTCACTTGGACGCACCTGAAGTGACATTTTTACCTCTGCGTGAATTAAAAGTAGCTTACCAAACTTTTGCCGCCAAACGTCGACTGGCTGGCACTTTTGATATATTTCTTGCCGACAAACGAATCGTTCATCGTTTACAAAATAAACTGGGTAAAGCATTCTACCAGGAGGTTTCAGGGAAATTCCCTATCCCAACGTCATTTTCGAAAAACAATCTTGTAGATACTGTTAGAGAGCAACTACATACATCTTTGTTTGTAATTCGAGGCCATGGGACAACTGATAGTCTCATAATTGGGGATGATCTTTTCTCTTCATCCGAGCTAAAGGAGAAATGT ATATCCGTTTGTGAAAAAATCTGTTCAGAAT ]
[+] EMBL CD084279 [ gTTACCTCTGCGTGAATTAAAAGTAGCTTACCAAACTTTTGCCGCCAAACGTCGACTGGCTGGCACTTTTGATATATTTCTTGCCGACAAACGAATCGTTCATCGTTTACAAAATAAACTGGGTAAAGCATTCTACCAGGAGGTTTCAGGGAAATTCCCTATCCCAACGTCATTTTCGAAAAACAATCTTGTAGATACTGTTAGAGAGCAACTACATACATCTTTGTTTGTAATTCGAGGCCATGGGACAACTGATAGTCTCATAATTGGGGATGATCTTTTCTCTTCATCCGAGCTAAAGGAG AATGTAATATCCGTTTGTGAAAAAATCTGTTCAGAATGGCCAGGTGGTGGTATGGCGAATATCCGTTCTATTTACATTCAGAGCTCAGGTATCTCTATTCCTTTGTACTACGATGAAACAGAAGCACCTTTAACCACAATAAGTGAAAAGTTATCGAGTCTTCCTAAATCTGCCCATCGAAGATCTTATGCACTTATTAAGAAACTTAAAAGCT ]
[-] EMBL CD160062 [ GCACTTTTGATATATTTCTTGCCGACAAACGAATCGTTCATCGTTTACAAAATAAACTGGGTAAAGCATTCTACCAGGAGGTTTCAGGGAAATTCCCTATCCCAACGTCATTTTCGAAAAACAATCTTGTAGATACTGTTAGAGAGCAACTACATACATCTTTGTTTGTAATTCGAGGCCATGGGACAACTGATAGTCTCATAATTGGGGATGATCTTTTCTCTTCATCCGAGCTAAAGGAG AATGTAATATCCGTTTGTGAAAAAATCTGTTCAGAATGGCCAGGTGGTGGTATGGCGAATATCCGTTCTATTTACATTCAGAGCTCAGGTATCTCTATTCCTTTGTACTACGATGAAACAGAAGCACCTTTAACCACAATAAGTGAA ]
[-] EMBL CD076208 [ CATTCTACCAGGAGGTTTCAGGGAAATTCCCTATCCCAACGTCATTTTCGAAAAACAATCTTGTAGATACTGTTAGAGAGCAACTACATACATCTTTGTTTGTAATTCGAGGCCATGGGACAACTGATAGTCTCATAATTGGGGATGATCTTTTCTCTTCATCCGAGCTAAAGGAG AATGTAATATCCGTTTGTGAAAAAATCTGTTCAGAATGGCCAGGTGGTGGTATGGCGAATATCCGTTCTATTTACATTCAGAGCTCAGGTATCTCTATTCCTTTGTACTACGATGAAACAGAAGCACCTTTAACCACAATAAGTGAAAAGTTATCGAGTCTTCCTAAATCTGCCCATCGAAGATCTTATGCACTTATTAAGAAACTTAAAAGCTCAGAGGATGGTGTGCCAATCGTTAGTCAACCTAAAAAGTCTCAAAAACCACTTAAAAGATTACCGAAAGAACTCGTTTCACAAATTGCAGATGATCTTCCTTTGACATCAGATGAAATCGACAAAATTTTACGCAAACGGAACTTCGAAGATAGTAGCATCCCTCAAATAAAGTTAAGACGAAATAAAAGGATTTCACGTCGTAAATTTGCAAAAATATAGTTC ]
[+] EMBL CD138180 [ TCTCATAATTGGGGATGATCTTTTCTCTTCATCCGAGCTAAAGGAG AATGTAATATCCGTTTGTGAAAAAATCTGTTCAGAATGGCCAGGTGGTGGTATGGCGAATATCCGTTCTATTTACATTCAGAGCTCAGGTATCTCTATTCCTTTGTACTACGATGAAACAGAAGCACCTTTAACCACAATAAGTGAAAAGTTATCGAGTCTTCCTAAATCTGCCCATCGAAGATCTTATGCACTTATTAAGAAACTTAAAAGCTCAGAGGATGGTGTGCCAATCGTTAGTC ]
[-] EMBL CD076955 [ TGGGGATGATCTTTTCTCTTCATCCGAGCTAAAGGAG AATGTAATATCCGTTTGTGAGACAATCTGTTCAGAATGGCCAGGTGGTGGTATGGCCAATATCCGTTCTATTTACATTCAGAGCTCAGGTATGTTTATTCCTTTGTACTACGATGAAACAGAAGCGCCTTTAACCACAATAAGTGAAAAGTTATCGAGTCTTCATAAATCTGCCCATCGAAGATCTTACGCACTTATTAAGAAACTTAAAAGCTCAGAGGATGGTGTGCCAATCGTTAGTCAACCTAAAAAGTCTCAAAAACCACTTAAAAGATTACCGAAAGAACTCGTTTCCCAAATTGCAGATGATCTTCCTTTGACATCAGATGAAATCGACAAAATTTTACGCAAACGGAACTTCGAAGATAGTAGCATCCCTCAAATAAAGTTAAGACGAAATAAAAGGATTTCACGTCGTAAATTTGCAAAAAGATAGTTC ]
[-] EMBL AI975229 [ ATCTTTTCTCTTCATCCGAGCTAAAGGAG AATGTAATATCCGTTTGTGAAAAAATCTGTTCAGAATGGCCAGGTGGTGGTATGGCGAATATCCGTTCTATTTACATTCAGAGCTCAGGTATCTCTATTCCTTTGTACTACGATGAAACAGAAGCACCTTTAACCACAATAAGTGAAAAGTTATCGAGTCTTCCTAAATCTGCCCATCGAAGATCTTATGCACTTATTAAGAAACTTAAAAGCTCAGAGGATGGTGTGCCAATCGTTAGTCAACCTAAAAAGTCTCAAAAACCACTTAAAAGATTACCGAAAGAACTCGTTTCACAAATTGCAGATGATCTTCCTTTGACATCAGATGAAATCGACAAAATTTTACGCAAACGGAACTTTGAAGATAGTAGCATCCCTCAAATAAAGTTAAGACGAAATAAAAGGATTTCACGTCGTAAATTTGCAAAAATATAGTTCATTCTTGTCAACGTTACTTTTTCTTTTAGGACAGTTTTACAATAAATTAGTA]
consensusID : consensus_9361#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 627 fasta sequence
[GTTACGATAATGGATATTATCAAAGAAAATTTAAATAACATCACAGATAATGGTTTCAAGAAACCTGAAGGGAAACTCAAAACTCTAAACTTAATTCCTGACAGTGTACATCTTGTTGTAGTAAGCAAATTATCCATTCCAAAAATTATTCGTGTAAACTTACCACATCGTTCAAAAAATCTGTCTATCTGTTTGATAGTTAAAGATTTTCGCAAAGATGATTATGAACGCACTACAGAATCTTGGAAACGACGTTGGAATATGGATTTGAAAAAGTCAGAACTTTCTCACTTGGACGCACCTGAAGTGACATTTTTACCTCTGCGTGAATTAAAAGTAGCTTACCAAACTTTTGCCGCCAAACGTCGACTGGCTGGCACTTTTGATATATTTCTTGCCGACAAACGAATCGTTCATCGTTTACAAAATAAACTGGGTAAAGCATTCTACCAGGAGGTTTCAGGGAAATTCCCTATCCCAACGTCATTTTCGAAAAACAATCTTGTAGATACTGTTAGAGAGCAACTACATACATCTTTGTTTGTAATTCGAGGCCATGGGACAACTGATAGTCTCATAATTGGGGATGATCTTTTCTCTTCATCCGAGCTAAAGGAGAATGTAATA]
[+] EMBL AI975480 [GTTACGATAATGGATATTATCAAAGAAAATTTAAATAACATCACAGATAATGGTTTCAAGAAACCTGAAGGGAAACTCAAAACTCTAAACTTAATTCCTGACAGTGTACATCTTGTTGTAGTAAGCAAATTATCCATTCCAAAAATTATTCGTGTAAACTTACCACATCGTTCAAAAAATCTGTCTATCTGTTTGATAGTTAAAGATTTTCGCAAAGATGATTATGAACGCACTACAGAATCTTGGAAACGACGTTGGAATATGGATTTGAAAAAGTCAGAACTTTCTCACTTGGACGCACCTGAAGTGACATTTTTACCTCTGCGTGAATTAAAAGTAGCTTACCAAACTTTTGCCGCCAAACGTCGACTGGCTGGCACTTTTGATATATTTCTTGCCGACAAACGAATCGTTCATCGTTTACAAAATAAACTGGGTAAAGCATTCTACCAGGAGGTTTCAGGGAAATTCCCTATCCCAACGTCATTTTCGAAAAACAATCTTGTAGATACTGTTAGAGAGCAACTACATACATCTTTGTTTGTAATTCGAGGCCATGGGACAACTGATAGTCTCATAATTGGGGATGATCTTTTCTCTTCATCCGAGCTAAAGGAGAATGTAATA]
[+] EMBL AI976552 [GTTACGATAATGGATATTATCAAAGAAAATTTAAATAACATCACAGATAATGGTTTCAAGAAACCTGAAGGGAAACTCAAAACTCTAAACTTAATTCCTGACAGTGTACATCTTGTTGTAGTAAGCAAATTATCCATTCCAAAAATTATTCGTGTAAACTTACCACATCGTTCAAAAAATCTGTCTATCTGTTTGATAGTTAAAGATTTTCGCAAAGATGATTATGAACGCACTACAGAATCTTGGAAACGACGTTGGAATATGGATTTGAAAAAGTCAGAACTTTCTCACTTGGACGCACCTGAAGTGACATTTTTACCTCTGCGTGAATTAAAAGTAGCTTACCAAACTTTTGCCGCCAAACGTCGACTGGCTGGCACTTTTGATATATTTCTTGCCGACAAACGAATCGTTCATCGTTTACAAAATAAACTGGGTAAAGCAT ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9361#0 TCGAGCCAANAATTCGGCA-CGAGGATTATCAAAGAAAATTTAAATAACATCACAGATAA 59
consensus_9361#1 ----------GTTACGATAATGGATATTATCAAAGAAAATTTAAATAACATCACAGATAA 50
* ** * * ***********************************
consensus_9361#0 TGGTTTCAAGAAACCTGAAGGGAAACTCAAAACTCTAAACTTAATTCCTGACAGTGTACA 119
consensus_9361#1 TGGTTTCAAGAAACCTGAAGGGAAACTCAAAACTCTAAACTTAATTCCTGACAGTGTACA 110
************************************************************
consensus_9361#0 TCTTGTTGTAGTAAGCAAATTATCCATTCCAAAAATTATTCGTGTAAACTTACCACATCG 179
consensus_9361#1 TCTTGTTGTAGTAAGCAAATTATCCATTCCAAAAATTATTCGTGTAAACTTACCACATCG 170
************************************************************
consensus_9361#0 TTCAAAAAATCTGTCTATCTGTTTGATAGTTAAAGATTTTCGCAAAGATGATTATGAACG 239
consensus_9361#1 TTCAAAAAATCTGTCTATCTGTTTGATAGTTAAAGATTTTCGCAAAGATGATTATGAACG 230
************************************************************
consensus_9361#0 CACTACAGAATCTTGGAAACGACGTTGGAATATGGATTTGAAAAAGTCAGAACTTTCTCA 299
consensus_9361#1 CACTACAGAATCTTGGAAACGACGTTGGAATATGGATTTGAAAAAGTCAGAACTTTCTCA 290
************************************************************
consensus_9361#0 CTTGGACGCACCTGAAGTGACATTTTTACCTCTGCGTGAATTAAAAGTAGCTTACCAAAC 359
consensus_9361#1 CTTGGACGCACCTGAAGTGACATTTTTACCTCTGCGTGAATTAAAAGTAGCTTACCAAAC 350
************************************************************
consensus_9361#0 TTTTGCCGCCAAACGTCGACTGGCTGGCACTTTTGATATATTTCTTGCCGACAAACGAAT 419
consensus_9361#1 TTTTGCCGCCAAACGTCGACTGGCTGGCACTTTTGATATATTTCTTGCCGACAAACGAAT 410
************************************************************
consensus_9361#0 CGTTCATCGTTTACAAAATAAACTGGGTAAAGCATTCTACCAGGAGGTTTCAGGGAAATT 479
consensus_9361#1 CGTTCATCGTTTACAAAATAAACTGGGTAAAGCATTCTACCAGGAGGTTTCAGGGAAATT 470
************************************************************
consensus_9361#0 CCCTATCCCAACGTCATTTTCGAAAAACAATCTTGTAGATACTGTTAGAGAGCAACTACA 539
consensus_9361#1 CCCTATCCCAACGTCATTTTCGAAAAACAATCTTGTAGATACTGTTAGAGAGCAACTACA 530
************************************************************
consensus_9361#0 TACATCTTTGTTTGTAATTCGAGGCCATGGGACAACTGATAGTCTCATAATTGGGGATGA 599
consensus_9361#1 TACATCTTTGTTTGTAATTCGAGGCCATGGGACAACTGATAGTCTCATAATTGGGGATGA 590
************************************************************
consensus_9361#0 TCTTTTCTCTTCATCCGAGCTAAAGGAGAATGTAATATCCGTTTGTGAAAAAATCTGTTC 659
consensus_9361#1 TCTTTTCTCTTCATCCGAGCTAAAGGAGAATGTAATA----------------------- 627
*************************************
consensus_9361#0 AGAATGGCCAGGTGGTGGTATGGCGAATATCCGTTCTATTTACATTCAGAGCTCAGGTAT 719
consensus_9361#1 ------------------------------------------------------------
consensus_9361#0 CTCTATTCCTTTGTACTACGATGAAACAGAAGCACCTTTAACCACAATAAGTGAAAAGTT 779
consensus_9361#1 ------------------------------------------------------------
consensus_9361#0 ATCGAGTCTTCCTAAATCTGCCCATCGAAGATCTTATGCACTTATTAAGAAACTTAAAAG 839
consensus_9361#1 ------------------------------------------------------------
consensus_9361#0 CTCAGAGGATGGTGTGCCAATCGTTAGTCAACCTAAAAAGTCTCAAAAACCACTTAAAAG 899
consensus_9361#1 ------------------------------------------------------------
consensus_9361#0 ATTACCGAAAGAACTCGTTTCACAAATTGCAGATGATCTTCCTTTGACATCAGATGAAAT 959
consensus_9361#1 ------------------------------------------------------------
consensus_9361#0 CGACAAAATTTTACGCAAACGGAACTTCGAAGATAGTAGCATCCCTCAAATAAAGTTAAG 1019
consensus_9361#1 ------------------------------------------------------------
consensus_9361#0 ACGAAATAAAAGGATTTCACGTCGTAAATTTGCAAAAATATAGTTCATTCTTGTCAACGT 1079
consensus_9361#1 ------------------------------------------------------------
consensus_9361#0 TACTTTTTCTTTTAGGACAGTTTTACAATAAATTAGTA 1117
consensus_9361#1 --------------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||