These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9372#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 702 fasta sequence [TCCTAGAGGTATCCACATCAACTCACGGGAATCCTGCTATTACATCTCTATTGCAGTTTCAGCTTGATATGTGGGAATTTGGAGTGATGCAGCTTTGTACCAGACCTAATGATATTAATAACCAAATGATCAAATTTTTTTACAATATGTTTCTATGATTACAAAACGATTCGTGACTAGAAATAAAACACTTTGATTAAAATAACTTACTGGAGTTTCAAGATTTATTTCTCTCGACTAAAGTGTAATAAACAAGTATGGGTACTGCTTGCAGTTAATAGTTTACGGGAATCAGAGCAAAAGTGCATAAAATGTATGGCAAGAGGGTCGCTTTCAGTTGTTAATAAAATGGAAGAATATTGAGCATTGATATCTTTTGCATCAGAAAGTGAGGTACTGCCGGTTTCAACAGGATTAGATGTATTAGTTGGGGGGTTTGCAAACAACTTCGATGTACGAAACTTATAAAGTGGCGTTAACGAGACTTCGGATGCATCCCAAAATCGAACAGATCCATCAGCATGTCCTGTGATGATTAATTCAGGAACTTGTTGACTACTCAATCGCCATTCTCCTCCAGTGATAGGCCATTCGCGACTGCTGAACACATCAGGTTCAGCACACGTTCCACTTTGAGTGGGGGACCGACGACTGCTAACAGAATAGAAAGCAGGTATCAAGTCTCCAGGACAATCAACTAAA] [+] EMBL CD061717 [TCCTAGAGGTATCCACATCAACTCACGGGAATCCTGCTATTACATCTCTATTGCAGTTTCAGCTTGATATGTGGGAATTTGGAGTGATGCAGCTTTGTACCAGACCTAATGATATTAATAACCAAATGATCAAATTTTTTTACAATATGTTTCTATGATTACAAAACGATTCGTGACTAGAAATAAAACACTTTGATTAAAATAACTTACTGGAGTTTCAAGATTTATTTCTCTCGACTAAAGTGTAATAAACAAGTATGGGTACTGCTTGCAGTTAATAGTTTACGGGAATCAGAGCAAAAGTGCATAAAATGTATGGCAAGAGGGTCGCTTTCAGTTGTTAATAAAATGGAAGAATATTGAGCATTGATATCTTTTGCATCAGAAAGTGAGGTACTGCCGGTTTCAACAGGATTAGATGTATTAGTTGGGGGGTTTGCAAACAACTTCGATGTACGAAACTTATAAAGTGGCGTTAACGAGACTTCGGATGCATCCCAAAATCGAACAGATCC ] [+] EMBL CD061928 [ gatatCGGGAAT AGAGC AAAGTGCGT AAATGTATGGCAAGAGGGTCGCTTTCAGTTGTTAATAAAATGGAAGAATATTGAGCATTGATATCTTTTGCATCAGAAAGTGAGGTACTGCCGGTTTCAACAGGATTAGATGTATTAGTTGGGGGGTTTGCAAACAACTTCGATGTACGAAACTTATAAAGTGGCGTTAACGAGACTTCGGATGCATCCCAAAATCGAACAGATCCATCAGCATGTCCTGTGATGATTAATTCAGGAACTTGTTGACTACTCAATCGCCATTCTCCTCCAGTGATAGGCCATTCGCGACTGCTGAACACATCAGGTTCAGCACACGTTCCA ] [-] EMBL CD062438 [ CAGAGCAAAAGTGCATAAAATGTATGGCAAGAGGGTCGCTTTCAGTTGTTAATAAAATGGAAGAATATTGAGCATTGATATCTTTTGCATCAGAAAGTGAGGTACTGCCGGTTTCAACAGGATTAGATGTATTAGTTGGGGGGTTTGCAAACAACTTCGATGTACGAAACTTATAAAGTGGCGTTAACGAGACTTCGGATGCATCCCAAAATCGAACAGATCCATCAGCATGTCCTGTGATGATTAATTCAGGAACTTGTTGACTACTCAATCGCCATTCTCCTCCAGTGATAGGCCATTCGCGACTGCTGAACACATCAGGTTCAGCACACGTTCCACTTTG ] [+] EMBL CD061970 [ AAAACTG ATAGAA GTA GCAAGAGGGTCGCTTTCAGTTGTT ATAAAATGGAAGAATATTGAGCATTGATATCTTTTGCATCAGAAAGTGAGGTACTGCCGGTTTCAACAGGATTAGATGTATTAGTTGGGGGGTTTGCAAACAACTTCGATGTACGAAACTTATAAAGTGGCGTTAACGAGACTTCGGATGCATCCCAAAATCGAACAGATCCATCAGCATGTCCTGTGATGATTAATTCAGGAACTTGTTGACTACTCAATCGCCATTCTCCTCCAGTGATAGGCCATTCGCGACTGCTGAACACATCAGGTTCAGCACACGTTCCACTTTGAGT ] [-] EMBL CD061882 [ TGCATAAAATGTATGGCAAGAGGGTCGCTTTCAGTTGTTAATAAAATGGAAGAATATTGAGCATTGATATCTTTTGCATCAGAAAGTGAGGTACTGCCGGTTTCAACAGGATTAGATGTATTAGTTGGGGGGTTTGCAAACAACTTCGATGTACGAAACTTATAAAGTGGCGTTAACGAGACTTCGGATGCATCCCAAAATCGAACAGATCCATCAGCATGTCCTGTGATGATTAATTCAGGAACTTGTTGACTACTCAATCGCCATTCTCCTCCAGTGATAGGCCATTCGCGACTGCTGAACACATCAGGTTCAGCACACGTTCCAC ] [+] EMBL CD064367 [ taccCAGAAAGTGAGGT CTGCCGGTTTC ACAGGA TAGATGTATTAGTTGGGGGGTTTGCAAACAACTTCGATGTACGAAACTTATAAAGTAGCGTTAACGAGACTTCGGATGCATCCCAAAATCGAACAGATCCATCAGCATGTCCTGTGATGATTAATTCAGGAACTTGTTGACTACTCAATCGCCATTCTCCTCCAGTGATAGGCCATTCGCGACTGCTGAACACATCAGGTTCAGCACACGTTCCACTTTGAATGGGGGA ] [-] EMBL CD181130 [ CAAACAACTTCGATGTACGAAACTTATAAAGTGGCGTTAACGAGACTTCGGATGCATCCCAAAATCGAACAGATCCATCAGCATGTCCTGTGATGATTAATTCAGGAACTTGTTGACTACTCAATCGCCATTCTCCTCCAGTGATAGGCCATTCGCGACTGCTGAACACATCAGGTTCAGCACACGTTCCACTTTGAGTACGATTCCGACGACTGCTAACAGAATAGAAAGCAGGTATCAAGTCTCCAGGACAATCAACTAAA] consensusID : consensus_9372#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 459 fasta sequence [ATTAAATATGAAGTTTCAAGATTTATTTCTCGACGACTTCGGATGCATCCCAAAATCGAACAGATCCATCAGCATGTCCTGTGATGATTAATTCAGGAACTTGTTGACTACTCAATCGCCATTCTCCTCCAGTGATAGGCCATTCGCGACTGCTGAACACATCAGGTTCAGCACACGTTCCACTTTGAGTACGATTCCGACGACTGCTAACAGAATAGAAAGCAGGTATCAAGTCTCCAGGACAATCAACTAAATATAAACAGCTGGTGACAGGAGAACTATGCAGATCCATTGGATATGGGTTTTCAAATGTTGTGAAGTTTGGAGATAAAAGATCGATAACAACAAGATCTTCTTGTAATAATATGGCAACTGCATAAGGATCCATTGTCTCACTTATGTAAGGAGACACACAAAGAGTTGTGAATTGAACAAGTTTATGATCCAATTGTAAAACAA] [-] EMBL CD147765 [ATTAAATATGAAGTTTCAAGATTTATTTCTCGACGACTTCGGATGCATCCCAAAATCGAACAGATCCATCAGCATGTCCTGTGATGATTAATTCAGGAACTTGTTGACTACTCAATCGCCATTCTCCTCCAGTGATAGGCCATTCGCGACTGCTGAACACATCAGGTTCAGCACACGTTCCACTTTGAGTACGATTCCGACGACTGCTAACAGAATAGAAAGCAGGTATCAAGTCTCCAGGACAATCAACTAAATATAAACAGCTGGTGACAGGAGAACTATGCAGATCCATTGGATATGGGTTTTCAAATGTTGTGAAGTTTGGAGATAAAAGATCGATAACAACAAGATCTTCTTGTAATAATATGGCAACTGCATAAGGATCCATTGTCTCACTTATGTAAGGAGACACACAAAGAGTTGTGAATTGAACAAGTTTATGATCCAATTGTAAAACAA] consensusID : consensus_9372#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 397 fasta sequence [ACCTTGACGTACTGGAACGAATACACGTAAATCTCTATCAGTTGGAGACGCAGATTGATAAGAGCTAACACTTCCACTGGATACGTGAGGCAATGACTGTTGGACAGTGTCTTTAGTTACGTTACCAAATACATTTTCAGCAGTATTCAAATGATCATCAGAGAAAGTATCACCAGTTGAATAGGCGAAACCAATATCATCTAATCCATCATAAGCCATATTGATATCCAGAACTGAAGTTTCAAGATTTATTTCTCGACGACTAAAGTGTAATAAACAAGTATGGGTACTGCTTGCAGTTAATAGTTTACGGGAATCAGAGCAAAAGTGCATAAAATGTATGGCAAGAGGGTCGCTTTCAGTTGTTAATCAAATGGAAGAATATTGAGCATTGATA] [+] EMBL CD147354 [ACCTTGACGTACTGGAACGAATACACGTAAATCTCTATCAGTTGGAGACGCAGATTGATAAGAGCTAACACTTCCACTGGATACGTGAGGCAATGACTGTTGGACAGTGTCTTTAGTTACGTTACCAAATACATTTTCAGCAGTATTCAAATGATCATCAGAGAAAGTATCACCAGTTGAATAGGCGAAACCAATATCATCTAATCCATCATAAGCCATATTGATATCCAGAACTGAAGTTTCAAGATTTATTTCTCGACGACTAAAGTGTAATAAACAAGTATGGGTACTGCTTGCAGTTAATAGTTTACGGGAATCAGAGCAAAAGTGCATAAAATGTATGGCAAGAGGGTCGCTTTCAGTTGTTAATCAAATGGAAGAATATTGAGCATTGATA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9372#0 TCCTAGAGGTATCCACATCAACTCACGGGAATCCTGCTATTACATCTCTATTGCAGTTTC 60 consensus_9372#1 ------------------------------------------------------------ consensus_9372#2 ------------------------------------------------------------ consensus_9372#0 AGCTTGATATGTGGGAATTTGGAGTGATGCAGCTTTGTACCAGACCTAATGATATTAATA 120 consensus_9372#1 ------------------------------------------------------------ consensus_9372#2 ---------------------------------------------------------ACC 3 consensus_9372#0 ACCAAATGATCAAATTTTTTTACAATATGTTTCTATGATTACAAAACGATTCGTGACTAG 180 consensus_9372#1 ATTAAAT-ATGAAGTTTCAAGATT-TATTTCTCGACGACTTCGGA------TGCATCCCA 52 consensus_9372#2 TTGACGTACTGGAACGAATACACG-TAAATCTCTATCAGTTGGAGACG--CAGATTGATA 60 * * * * * ** * ** * * * * consensus_9372#0 AAATAAAACACTTTGATTAA-AATAACTTACTGGAGTT---TCAAGATTTATTTCTCTCG 236 consensus_9372#1 AAATCGAACAGATCCATCAG-CATGTCCTGTGATGATTAATTCAGGAACTTGTTGACT-- 109 consensus_9372#2 AGAGCTAACACTTCCACTGGATACGTGAGGCAATGACTGTTGGACAGTGTCTTTAGTT-- 118 * * **** * * * * * * ** * consensus_9372#0 ACTAAAGTGTAATAAACAAGTATGGGTA--CTGCTTGCAGTTAATAGTTTACGGGAATCA 294 consensus_9372#1 ACTCAATCGCCATTCTCCTCCAGTGATAGGCCATTCGCGACTG-----CTGAACACATCA 164 consensus_9372#2 ACGTTACCA-AATACATTTTCAGCAGTATTCAAATGATCATCA-----GAGAAAGTATCA 172 ** * ** * ** * * **** consensus_9372#0 GAGCAAAAGTGCATAAAATGTATGGCAAGAGGGTCGCTTTCAGTTGTTAATAAAATGGAA 354 consensus_9372#1 GGTTCA----GCACACGTTCCACTTTGAGTACGATTCCGACGACTGCTAACAGAATAGAA 220 consensus_9372#2 CCAGTT----GAATAGGCGAAACC---AATATCATCTAATCCATCATAAGCCATATTGAT 225 * * * * * * * ** ** consensus_9372#0 GAATATTGAGCATTGATATCTTTTGCATCAGAAAGTGAG---GTACTGCCGGTTTCAACA 411 consensus_9372#1 AG----CAGGTATCAA-GTCTCCAGGACAATCAACTAAATATAAACAGCTGGTGACAGGA 275 consensus_9372#2 AT----CCAGAACTGAAGTTTCAAGATTTATTTCTCGAC---GACTAAAGTGTAATAA-A 277 * * * * * * * * ** * * consensus_9372#0 GGATTAGATGTATTAGTTGGG---GGGTTTGCAAACAACTTCGATGTACGAAACTTATAA 468 consensus_9372#1 GAACTATGCAGATCCATTGGATATGGGTTTTCAAATG-TTGTGAAGTTTGGAGATAAAAG 334 consensus_9372#2 CAAGTATGGGTACTGCTTGCAGTTAATAGTTTACGGGAAT-CAGAGCAAAAGTGCATAAA 336 * ** * *** * * * * * consensus_9372#0 AGTGGCGTTAACGAGA-CTTCGGATG----CATCCCAAAATCGAACAGATCCATCAGCAT 523 consensus_9372#1 ATCGATAACAACAAGATCTTCTTGTAATAATATGGCAACTGCATAAGGATCCATTGTCTC 394 consensus_9372#2 ATGTATGGCAAGAGGGTCGCTTTCAG-----TTGTTAATCAAATGGAAGAATATTGA-GC 390 * ** * * * ** ** consensus_9372#0 GTCC-TGTGATGATTAATTCAGGAACTTGTTGACTACTCAATCGCCATTCTCCTCCAGTG 582 consensus_9372#1 ACTTATGTAAGGAGACACACAAAGAGTTGTGAATTGAACAAGT----TTATGATCCAATT 450 consensus_9372#2 ATTGATA----------------------------------------------------- 397 * consensus_9372#0 ATAGGCCATTCGCGACTGCTGAACACATCAGGTTCAGCACACGTTCCACTTTGAGTGGGG 642 consensus_9372#1 GTAAAACAA--------------------------------------------------- 459 consensus_9372#2 ------------------------------------------------------------ consensus_9372#0 GACCGACGACTGCTAACAGAATAGAAAGCAGGTATCAAGTCTCCAGGACAATCAACTAAA 702 consensus_9372#1 ------------------------------------------------------------ consensus_9372#2 ------------------------------------------------------------ |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||