These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9374#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 466 fasta sequence [CAGGCATGGCTGAGCAGCGAGAAAACGCATTTCAAAAGCAAGAAGTGAAAGGAAAGAATGGTGGAAGATATTACAAAAACATAGGCCTTGGTTATAAAACTCCAAAAGAGGCTATTTTCGGTACTTACATTGACAAAAAGTGTCCCTTCACTGGAAATGTACGTATCCGTGGTCGAATCCTTACGGGTGTTGTGCGTAAAACTAAAATGAATCGGACTATTGTTATTCGCCGTGACTACCTTAAGTACGTGAAGAAGTACAACCGATATGAGAAGCGACATAAGAATATGTCTGTACATTTATCTCCTTGCTTCAGAGATGTGGCTGTTGGAGATGTCGTAACTGTCGGTGAGTGTAGAC-CCCTGAGCAAAACCGTGTCATTCAATGTCATCAAGGTTTCGAAAGCCGCTGGTTCAAAGTACAAAAAAGCCTTCCAAAAGTTTTAATGCCTGAAA-TAAACGTATAG] [+] EMBL CD128314 [CAGGCATGGCTGAGCAGCGAGAAAACGCATTTCAAAAGCAAGAAGTGAAAGGAAAGAATGGTGGAAGATATTACAAAAACATAGGCCTTGGTTATAAAACTCCAAAAGAGGCTATTTTCGGTACTTACATTGACAAAAAGTGTCCCTTCACTGGAAATGTACGTATCCGTGGTCGAATCCTTACGGGTGTTGTGCGTAAAACTAAAATGAATCGGACTATTGTTATTCGCCGTGACTACCTTAAGTACGTGAAGAAGTACAACCGATATGAGAAGCGACATAAGAATATGTCTGTACATTTATCTCCTTGCTTCAGAGATGTGGCTGTTGGAGATGTCGTAACTGTCGGTGAGTGTAGAC CCCTGAGCAAAACCGTGTCATTCAATGTCATCAAGGTTTCGAAAG ] [-] EMBL CD128298 [ AAGGAAAGAATGGTGGAAGATATTACAAAAACATAGGCCTTGGTTATAAAACTCCAAAAGAGGCTATTTTCGGTACTTACATTGACAAAAAGTGTCCCTTCACTGGAAATGTACGTATCCGTGGTCGAATCCTTACGGGTGTTGTGCGTAAAACTAAAATGAATCGGACTATTGTTATTCGCCGTGACTACCTTAAGTACGTGAAGAAGTACAACCGATATGAGAAGCGACATAAGAATATGTCTGTACATTTATCTCCTTGCTTCAGAGATGTGGCTGTTGGAGATGTCGTAACTGTCGGTGAGTGTAGACACTCTGAGCAAAACCGTGTCATTC ] [-] EMBL CD075107 [ AAAAACATAGGCCTTGGTTATAAAACTCCAAAAGAGGCTATTTTCGGTACTTACATTGACAAAAAGTGTCCCTTCACTGGAAATGTACGTATCCGTGGTCGAATCCTTACGGGTGTTGTGCGTAAAACTAAAATGAATCGGACTATTGTTATTCGCCGTGACTACCTTAAGTACGTGAAGAAGTATAACCGATATGAGAAGCGACATAAGAATATGTCTGTACATTTATCTCCTTGCTTCAGAGATGTGGCTGTTGGAGATGTCGTAACTGTCGGTGAGTGTAGAC CCCTGAGCAAAACCGTGTCATTCAATGTCATCAAGGTTTCGAAAGCCGCTGGTTCAAAGTACAAAAAAGCCTTCCAAAAGTTTTAATGCCTGAAA TAAACGTATAG] [-] EMBL CD184503 [ AGGCCTTGGTTATAAAACTCCAAAAGAGGCTATTTTCGGTACTTACATTGACAAAAAGTGTCCCTTCACTGGAAATGTACGTATCCGTGGTCGAATCCTTGCGGGTGTTGTGCGTAAAACTAAAATGAATCGGACTATTGTTATTCGCCGTGACTACCTTAAGTACGTGAAGAAGTACAACCGATATGAGAAGCGACATAAGAATATGTCTGTACATTTATCTCCTTGCTTCAGAGATGTGGCTGTTGGAGATGTCGTAACTGTCGGTGAGTGTAGAC CCCTGAGCAAAACCGTGTCATTCAATGTCATCA ] [+] EMBL CD081278 [ GGTTAT AAACTCCAAAAGAGGCTATTTTCGGTACTTACATTGACAAAAAGTGTCCCTTCACTGGAAATGTACGTATCCGTGGTCGAATCCTTACGGGTGTTGTGCGTAAAACTAAAATGAATCGGACTATTGTTATTCGCCGTGACTACCTTAAGTACGTGAAGAAGTATAACCGATATGAGAAGCGACATAAGAATATGTCTGTACATTTATCTCCTTGCTTCAGAGATGTGGCTGTTGGAGATGTCGTAACTGTCGGTGAGTGTAGAC CCCTGAGCAAAACCGTGTCATTCAATGTCATCAAGGTTTCGAAAGCCGCTGGTTCAAAGTACAAAAAAGCCTTCCAAAAGTTTTAATGCCTGAAA TAAACGTATA ] [-] EMBL CD192204 [ GACAAAAAGTGTCCCTTCACTGGAAATGTACGTATCCGTGGTCGAATCCTTACGGGTGTTGTGCGTAAAACTAAAATGAATCGG ] [+] EMBL CD192332 [ TGTACGTATCCGTGGTCGAATCCTTACGGGTGTTGTGCGTAAAACTAAAATGAATCGGACTATTGTTATTCGCCGTGACTACCTTAAGTACGTGAAGAAGTACAACCGATATGAGAAGCGACATAAGAATATGTCTGTACATTTATCTCCTTGCTTCAGAGATGT ] [-] EMBL AI740398 [ AGATGTCGTAACTGTCCGTGAGTGTAGAC CCCTGGGCAAAACCGTGTCATTCAATGNCNTCAAGGTTTCGAAAGCCGCTGGTTCAAAGTTCAAAAAAGCCTTCCAAAAGGTTTAATGCCTGAAATTAAACGctagg] consensusID : consensus_9374#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 361 fasta sequence [GTGTCGGGGCTCAAGAACAAGAGGGGCCCCCCGGCCGGAGGAATACGGACCAGGGGGAAAGGGACGGACCCGGGGCGAAACCCTACAGGTGTTGTCCGGAAACCGAAATGAAACGGAGCAATGTGAATCGCCGTGACACCCTTAAGCACGTGAAGAAGGACAACCGATATGAGAAGCGACATAAGAATATGGCTGTACATTTATCCCCTTGCTCAGAGATGTGGCTGTTGGAGATGCCGTAACTGTCGGTGAGTGTAGACCCCTGAGCAAAACCGTGTCATTCAATGTCATCAAGGTTTCGAAAGCCGCTGGTTCAAAGTACAGAAAAGCCTTCCAAAAGTTTAATGCCTGAAATAACGTA] [-] EMBL SMAA69892 [GTGTCGGGGCTCAAGAACAAGAGGGGCCCCCCGGCCGGAGGAATACGGACCAGGGGGAAAGGGACGGACCCGGGGCGAAACCCTACAGGTGTTGTCCGGAAACCGAAATGAAACGGAGCAATGTGAATCGCCGTGACACCCTTAAGCACGTGAAGAAGGACAACCGATATGAGAAGCGACATAAGAATATGGCTGTACATTTATCCCCTTGCTCAGAGATGTGGCTGTTGGAGATGCCGTAACTGTCGGTGAGTGTAGACCCCTGAGCAAAACCGTGTCATTCAATGTCATCAAGGTTTCGAAAGCCGCTGGTTCAAAGTACAGAAAAGCCTTCCAAAAGTTTAATGCCTGAAATAACGTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9374#0 CAGGCATGGCTGAGCAGCGAGAAAACGCATTTCAAAAGCAAGAAGTGAAAGGAAAGAATG 60 consensus_9374#1 ------------------------------------------------------------ consensus_9374#0 GTGGAAGATATTACAAAAACATAGGCCTTGGTTATAAAACTCCAAAAGAGGCTATTTTCG 120 consensus_9374#1 ------------------------------GTGTCGGGGCTCAAGAACAAGAGG-----G 25 ** *** * ** * * * consensus_9374#0 GTACTTACATTGACAAAAAGTGTCCCTTCACTGGAAATGTACGTATCCGTGGTCGAATCC 180 consensus_9374#1 GCCCCCCGGCCGGAGGAATACGGACCA--GGGGGAAAGGGACGGACCCG-GGGCGAAACC 82 * * * ** * ** ***** * *** * *** ** **** ** consensus_9374#0 TTACGGGTGTTGTGCGTAAAACTAAAATGAATCGGACTATTGTTATTCGCCGTGACTACC 240 consensus_9374#1 CTACAGGTGTTGTCCG-GAAACCGAAATGAAACGGAGCAATGTGAATCGCCGTGACACCC 141 *** ******** ** **** ******* **** * *** * ********** ** consensus_9374#0 TTAAGTACGTGAAGAAGTACAACCGATATGAGAAGCGACATAAGAATATGTCTGTACATT 300 consensus_9374#1 TTAAGCACGTGAAGAAGGACAACCGATATGAGAAGCGACATAAGAATATGGCTGTACATT 201 ***** *********** ******************************** ********* consensus_9374#0 TATCTCCTTGCTTCAGAGATGTGGCTGTTGGAGATGTCGTAACTGTCGGTGAGTGTAGAC 360 consensus_9374#1 TATCCCCTTGCT-CAGAGATGTGGCTGTTGGAGATGCCGTAACTGTCGGTGAGTGTAGAC 260 **** ******* *********************** *********************** consensus_9374#0 CCCTGAGCAAAACCGTGTCATTCAATGTCATCAAGGTTTCGAAAGCCGCTGGTTCAAAGT 420 consensus_9374#1 CCCTGAGCAAAACCGTGTCATTCAATGTCATCAAGGTTTCGAAAGCCGCTGGTTCAAAGT 320 ************************************************************ consensus_9374#0 ACAAAAAAGCCTTCCAAAAGTTTTAATGCCTGAAATAAACGTATAG 466 consensus_9374#1 ACAGAAAAGCCTTCCAAAAGTTT-AATGCCTGAAATAA-CGTA--- 361 *** ******************* ************** **** |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||