These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9383#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1060 fasta sequence [CGAGGCCATTAATTCGGCACGAGGGAAAAAATCTAATGACATCATGTCGTAATGTGGTTCATAGTCATTATTTAATCTATTTTCCTGATGGTTACGGTTATCCATATCGTGCTCAAGATGTACTGGAATGTGAATTTATTTTACTTGAAGCAATGGATTGTTCATTAGTCGTCTTTCATCCTTATCGTCCGTTGGTACAGTTTTGTGACGAACTTCGCCCCCAAATGCATGAGTATGCTGATGTACTGTTAGAACGTGCTTGGTGGCTAGTGAATGATAGTTTTCGAACAGACGTGTGCCTGCATTATCCTCCCTATATAATTGCTCTAGGTTGTCTACAACTGGCTGTTGTAATTATTTCAAGTAATCCTGACCTATTAGTCGGCTCCGTCAATATCAGTTCATCATCGTTTATGAATTCCAGTTTATCTATTTCATCAAATAAACATGGTTACTTTGGGCACCAAACTCAATCAACTGTTAATCCTTCATTAGTTGCTGATCGTTGGTTCAGTGAATTAAATGTGGATATGGAAAGGGTCTTGGAAATTTCTCGTCATCTACTTAGTTTGTATGATTTATGGCGTCGCTTTGATGAACTTGCTGAAATGCCTAACATATTACTAAAAAAACTCCCACGTCCTGTCATTCAATCACCGCATACTTCACAAAATTACCAGTCTGGCAATTCTGTCAATCCGACGGGTTGTAGTAGTACTACTGCAGCTCAATCATCTAATCTATCTAGTGGTACACAACAACAAAATCATGGTGGATCAATGGTTGTACCATCGGCTACAGGTGCTGTTGGTACAGGAAGTAGTAGTGGTGCTACGGGAACTGTTGGTAGTATACATACTATGCCGGATCATCAAACTCAACAACAACAAAGATCAATGACGTCATTTAATCAACCACGTATGCATCCACAAGGTGGCGGGATGCAGCATATGGGAGTTAGGTAGACGGATAAAAACAAAGCGAGTATGACTGCATATCTGTATAAAACTTAGGGAGTATTTATTTATATGTATTCAGTTCTATGTACAAAAATAATATA] [+] EMBL CD081754 [CGAGGCCATTAATTCGGCACGAGGGAAAAAATCTAATGACATCATGTCGTAATGTGGTTCATAGTCATTATTTAATCTATTTTCCTGATGGTTACGGTTATCCATATCGTGCTCAAGATGTACTGGAATGTGAATTTATTTTACTTGAAGCAATGGATTGTTCATTAGTCGTCTTTCATCCTTATCGTCCGTTGGTACAGTTTTGTGACGAACTTCGCCCCCAAATGCATGAGTATGCTGATGTACTGTTAGAACGTGCTTGGTGGCTAGTGAATGATAGTTTTCGAACAGACGTGTGCCTGCATTATCCTCCCTATATAATTGCTCTAGGTTGTCTACAACTGGCTGTTGTAATTATTTCAAGTAATCCTGACCTATTAGTCGGCTCCGTCAATATCAGTTCATCATCGTTTATGAATTCCAGTTTATCTATTTCATCAAATAAACATGGTTACTTTGGGCACCAAACTCAATCAACTGTTAATCCTTCATTAGTTGCTGATCGTTGGTTCAGTGAATTAAATGTGGATATGGAAAGGGTCTTGGAAATTTCTCGTCATCTACTTAGTTTGTATGATTTATGGCGTCGCTTTGATGAACTTGCTGAAATGCCTAACATATTACTAAAAAAACTCCCACGTCCTGTCATTCAATCACCGCATACTTCACAAAATTACCAGTCTGGCAATTCTGTCAATCCGACGGGTTGTAGTAGTACTACTGCAGCTCAATCATCTAATCTATCTAGTGGTACACAACAACAAAATCATGGTGGATCAATGGTTGTACCATCGGCTACAGGTGCTGTTGGTACAGGAAGTAGTAGTGGTGCTACGGGAACTGTTGGTAGTATACATACTATGCCGGATC ] [+] EMBL CD078528 [ AGTTTTCGAACAGACGTGTGCCTGCATTATCCTCCCTATATAATTGCTCTAGGTTGTCTACAACTGGCTGTTGTAATTATTTCAAGTAATCCTGACCTATTAGTCGGCTCCGTCAATATCAGTTCATCATCGTTTATGAATTCCAGTTTATCTATTTCATCAAATAAACATGGTTACTTTGGGCACCAAACTCAATCAACTGTTAATCCTTCATTAGTTGCTGATCGTTGGTTCAGTGAATTAAATGTGGATATGGAAAGGGTCTTGGAAATTTCTCGTCATCTACTTAGTTTGTATGATTTATGGCGTCGCTTTGATGAACTTGCTGAAATGCCTAACATATTACTAAAAAAACTCCCACGTCCTGTCATTCAATCACCGCATACTTCACAAAATTACCAGTCTGGCAATTCTGTCAATCCGACGGGTTGTAGTAGTACTACTGCAGCTCAATCATCTAATCTATCTAGTGGTACACAACAACAAAATCATGGTGGATCAATGGTTGTACCATCGGCTACAGGTGCTGTTGGTACAGGAAGTAGTAGTGGTGCTACGGGAACTGNTGGTAGTATACATACTATGCCGGATCA ] [-] EMBL CD135927 [ CCTGCATTATCCTCCCTATATAATTGCTCTAGGTTGTCTACAACTGGCTGTTGTAATTATTTCAAGTAATCCTGACCTATTAGTCGGCTCCGTCAATATCAGTTCATCATCGTTTATGAATTCCAGTTTATCTATTTCATCAAATAAACATGGTTACTTTGGGCACCAAACTCAATCAACTGTTAATCCTTCATTAGTTGCTGATCGTTGGTTCAGTGAATTAAATGTGGATATGGAAAGGGTCTTGGAAATTTCTCGTCATCTACTTAGTTTGTATGATTTATGGCGTCGCTTTGATGAACTTGCTGAAATGCCTAACATATTACTAAAAAAACTCCCACGTCCTGTCATTCAATCACCGCATACTTCACAAAATTACCAGTCTGGCAATTCTGTCAATCCGACGGGTTGTAGTAGTACTACTGCAGCTCAATCATCT ] [-] EMBL CD072997 [ TATGGAAAGGGTCTTGGAAATTTCTCGTCATCTACTTAGTTTGTATGATTTATGGCGTCGCTTTGATGAACTTGCTGAAATGCCTAACATATTACTAAAAAAACTCCCACGTCCTGTCATTCAATCCCCGCATACTTCACAAAATTACCAGTCTGGCAATTCTGTCAATCCGACGGGTTGTAGTAGTACTACTGCAGCTCAATCATTTAATCTATCTAGTGGTACACAACAACAAAATCATGGTGGATCAATGGTTGTACCATCGGCTACAGGTGCTGTTGGTACAGGAAGTAGTAGTGGTGCTACGGGAACTGTTGGTAGTATACATACTATGCCGGATCATCAAACTCAACAACAACAAAGATCAATGACGTCATTTAATCAACCACGTATGCATCCACAAGGTGGCGGGATGCAGCATATGGGAGTTAGGTAGACGGATAAAAACAAAGCGAGTATGACTGCATATCTGTATAAAACTTAGGGAGTATTTATTTATATGTATTCAGTTCTATGTACAAAAATAATATA] consensusID : consensus_9383#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 678 fasta sequence [CTCCAGGCCAANAATTCGGCACGAGGCTTGTCTGTTTTTAGCATCTAAAGTTGAGGAATTTGGTGTAGTTTCTCAAAAAAATCTAATGACATCATGTCGTAATGTGGTTCATAGTCATTATTTAATCTATTTTCCTGATGGTTACGGTTATCCATATCGTGCTCAAGATGTACTGGAATGTGAATTTATTTTACTTGAAGCAATGGATTGTTCATTAGTCGTCTTTCATCCTTATCGTCCGTTGGTACAGTTTTGTGACGAACTTCGCCCCCAAATGCATGAGTATGCTGATGTACTGTTAGAACGTGCTTGGTGGCTAGTGAATGATAGTTTTCGAACAGACGTGTGCCTGCATTATCCTCCCTATATAATTGCTCTAGGTTGTCTACAACTGGCTGTTGTAATTATTTCAAGTAATCCTGACCTATTAGTCGGCTCCGTCAATATCAGTTCATCATCGTTTATGAATTCCAGTTTATCTATTTCATCAAATAAACATGGTTACTTTGGGCACCAAACTCAATCAACTGTTAATCCTTCATTAGTTGCTGATCGTTGGTTCAGTGAATTAAATGTGGATATGGAAAGGGTCTTGGAAATTTCTCGTCATCTACTTAGTTTGTATGATTTATGGCGTCGCTTTGATGAACTTGCTGAANTNNGCTACATATTACTANA] [+] EMBL CD080596 [CTCCAGGCCAANAATTCGGCACGAGGCTTGTCTGTTTTTAGCATCTAAAGTTGAGGAATTTGGTGTAGTTTCTCAAAAAAATCTAATGACATCATGTCGTAATGTGGTTCATAGTCATTATTTAATCTATTTTCCTGATGGTTACGGTTATCCATATCGTGCTCAAGATGTACTGGAATGTGAATTTATTTTACTTGAAGCAATGGATTGTTCATTAGTCGTCTTTCATCCTTATCGTCCGTTGGTACAGTTTTGTGACGAACTTCGCCCCCAAATGCATGAGTATGCTGATGTACTGTTAGAACGTGCTTGGTGGCTAGTGAATGATAGTTTTCGAACAGACGTGTGCCTGCATTATCCTCCCTATATAATTGCTCTAGGTTGTCTACAACTGGCTGTTGTAATTATTTCAAGTAATCCTGACCTATTAGTCGGCTCCGTCAATATCAGTTCATCATCGTTTATGAATTCCAGTTTATCTATTTCATCAAATAAACATGGTTACTTTGGGCACCAAACTCAATCAACTGTTAATCCTTCATTAGTTGCTGATCGTTGGTTCAGTGAATTAAATGTGGATATGGAAAGGGTCTTGGAAATTTCTCGTCATCTACTTAGTTTGTATGATTTATGGCGTCGCTTTGATGAACTTGCTGAANTNNGCTACATATTACTANA] [-] EMBL CD195829 [ ATGAGTATGCTGATGTACTGTTAGAACGTGCTTGGTGGCTAGTGAATGATAGTTTTCGAACAGACGTGTGCCTGCATTATCCTCCCTATATAATTGCTCTAGGTTGTCTACAACTGGCTGTTGTAATTATTTCAAGTAATCCTGACCTATTAGTCGGCTCCGTCAATATCAGTTCATCATCGTTTATGAATTCCAGTTTATCTATTTCATCAAATAAACATGGTTACTTTGGGCACCAAACTCAATCAACTGTTAATCCTTCATTAGTTGCTGATCGTTGGTTCAGTGAATTAAATGTGGATATG ] [-] EMBL CD195776 [ CAAGTAATCCTGACCTATTAGTCGGCTCCGTCAATATCAGTTCATCATCGTTTATGAATTCCAGTTTATCTATTTCATCAAATAAACATGGTTTCCTTGGGCACCAAACTCAATCAACTGTTAATCCTTCATTAGTTGCTGATCGTTGGTTCAGTGAATTAAATGTGGATATG ] consensusID : consensus_9383#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 634 fasta sequence [GAATATCAGAAAGTGATGCTTTTCTTTACTGATGTCATTCAGGCATTCGGCAAGAGCGTTGAAGTCCGTCAACAAGTAATTGCAACCGCTTTAGTATATTTCAAAAGATTTTACAGTCGCAATTCATTTAAGACTATTGACCCATGGTTAATGGCTCCATCTTGTCTGTTTTTAGCATCTAAAGTTGAGGAATTTGGTGTAGTTTCTCAAAAAAAATCTAATGACATCATGTCGTAATGTGGTTCATAGTCATTATTTAATCTATTTTCCTGATGGTTACGGTTATCCATATCGTGCTCAAGATGTACTGGAATGTGAATTTATTTTACTTGAAGCAATGGATNGTTCATTAGTCGTCTTTCATCCTTATCGTCCGNTGGTACAGTTTGGNGACGAACTTCGCCCCCCAAATGCATGAGTATGCTGATGTACTGNTAGGAACGTNCTGGGTGGCTAGTGAATGATAGTTTTCGAACAGACGTNTTGCCTGCATTATCCNCCCCATATTATTGCTCTAGGTNGGCTTCAACTGGCTGGGGGAATTATTCAAAGTAANCCCGACNATAGGCGGTCCCCAAAATCAGTCAACATCGNTTGANTCNGNTTTCTTTTCACAAATAACATGGTACTGGGG] [+] EMBL CD200346 [GAATATCAGAAAGTGATGCTTTTCTTTACTGATGTCATTCAGGCATTCGGCAAGAGCGTTGAAGTCCGTCAACAAGTAATTGCAACCGCTTTAGTATATTTCAAAAGATTTTACAGTCGCAATTCATTTAAGACTATTGACCCATGGTTAATGGCTCCATCTTGTCTGTTTTTAGCATCTAAAGTTGAGGAATTTGGTGTAGTTTCTCAAAAAAAATCTAATGACATCATGTCGTAATGTGGTTCATAGTCATTATTTAATCTATTTTCCTGATGGTTACGGTTATCC ] [+] EMBL SMCYCLNRM [ ATCAGAAAGTGATGNTTTNCTTTACTGATGTCATTCAGGCATTCGGNAAGAGCGTTGAAGTCCGTCAACAAGTAATTGNAACCGCTTTAGTATATTTCAAAAGATTTTACAGTCGCAATTCATTTAAGACTATTGACCCATGGTTAATGGCTCCATCTTGTCTGTTTTTAGCATCTAAAGTTGAGGAATTTGGTGTAGTTTCTC AAAAAAATCTAATGACATCATGTCGTAATGTGGTTCATAGTCATTATTTAATCTATTTTCCTGATGGTTACGGTTATCCATATCGTGCTCAAGATGTACTGGAATGTGAATTTATTTTACTTGAAGCAATGGATNGTTCATTAGTCGTCTTTCATCCTTATCGTCCGNTGGTACAGTTTGGNGACGAACTTCGCCCCCCAAATGCATGAGTATGCTGATGTACTGNTAGGAACGTNCTGGGTGGCTAGTGAATGATAGTTTTCGAACAGACGTNTTGCCTGCATTATCCNCCCCATATTATTGCTCTAGGTNGGCTTCAACTGGCTGGGGGAATTATTCAAAGTAANCCCGACNATAGGCGGTCCCCAAAATCAGTCAACATCGNTTGANTCNGNTTTCTTTTCACAAATAACATGGTACTGGGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9383#0 ------------------------------------------------------------ consensus_9383#1 ------------------------------------------------------------ consensus_9383#2 GAATATCAGAAAGTGATGCTTTTCTTTACTGATGTCATTCAGGCATTCGGCAAGAGCGTT 60 consensus_9383#0 ------------------------------------------------------------ consensus_9383#1 ------------------------------------------------------------ consensus_9383#2 GAAGTCCGTCAACAAGTAATTGCAACCGCTTTAGTATATTTCAAAAGATTTTACAGTCGC 120 consensus_9383#0 ------------------------------------------------------------ consensus_9383#1 --------------CTCCAGGCCAANAATTCGGCACGAGGCTTGTCTGTTTTTAGCATCT 46 consensus_9383#2 AATTCATTTAAGACTATTGACCCATGGTTAATGGCTCCATCTTGTCTGTTTTTAGCATCT 180 consensus_9383#0 CGAGGCCATTAATTCGGCACGAGG-----GAAAAAATCTAATGACATCATGTCGTAATGT 55 consensus_9383#1 AAAGTTGAGGAATTTGGTGTAGTTTCTC-AAAAAAATCTAATGACATCATGTCGTAATGT 105 consensus_9383#2 AAAGTTGAGGAATTTGGTGTAGTTTCTCAAAAAAAATCTAATGACATCATGTCGTAATGT 240 ** * **** ** ****************************** consensus_9383#0 GGTTCATAGTCATTATTTAATCTATTTTCCTGATGGTTACGGTTATCCATATCGTGCTCA 115 consensus_9383#1 GGTTCATAGTCATTATTTAATCTATTTTCCTGATGGTTACGGTTATCCATATCGTGCTCA 165 consensus_9383#2 GGTTCATAGTCATTATTTAATCTATTTTCCTGATGGTTACGGTTATCCATATCGTGCTCA 300 ************************************************************ consensus_9383#0 AGATGTACTGGAATGTGAATTTATTTTACTTGAAGCAATGGATTGTTCATTAGTCGTCTT 175 consensus_9383#1 AGATGTACTGGAATGTGAATTTATTTTACTTGAAGCAATGGATTGTTCATTAGTCGTCTT 225 consensus_9383#2 AGATGTACTGGAATGTGAATTTATTTTACTTGAAGCAATGGATNGTTCATTAGTCGTCTT 360 ******************************************* **************** consensus_9383#0 TCATCCTTATCGTCCGTTGGTACAGTTTTGTGACGAACTTCGCCCCC-AAATGCATGAGT 234 consensus_9383#1 TCATCCTTATCGTCCGTTGGTACAGTTTTGTGACGAACTTCGCCCCC-AAATGCATGAGT 284 consensus_9383#2 TCATCCTTATCGTCCGNTGGTACAGTTTGGNGACGAACTTCGCCCCCCAAATGCATGAGT 420 **************** *********** * **************** ************ consensus_9383#0 ATGCTGATGTACTGTTAG-AACGTGCTTGGTGGCTAGTGAATGATAGTTTTCGAACAGAC 293 consensus_9383#1 ATGCTGATGTACTGTTAG-AACGTGCTTGGTGGCTAGTGAATGATAGTTTTCGAACAGAC 343 consensus_9383#2 ATGCTGATGTACTGNTAGGAACGTNCTGGGTGGCTAGTGAATGATAGTTTTCGAACAGAC 480 ************** *** ***** ** ******************************** consensus_9383#0 GTGT-GCCTGCATTATCCTCCCTATATAATTGCTCTAGGTTGTCTACAACTGGCTGTTGT 352 consensus_9383#1 GTGT-GCCTGCATTATCCTCCCTATATAATTGCTCTAGGTTGTCTACAACTGGCTGTTGT 402 consensus_9383#2 GTNTTGCCTGCATTATCCNCCCCATATTATTGCTCTAGGTNGGCTTCAACTGGCTGGGGG 540 ** * ************* *** **** ************ * ** ********** * consensus_9383#0 AATTATTTCAAGTAATCCTGACCTATTAGTCGGCTCCGTCAATATCAGTTCATCATCGTT 412 consensus_9383#1 AATTATTTCAAGTAATCCTGACCTATTAGTCGGCTCCGTCAATATCAGTTCATCATCGTT 462 consensus_9383#2 AATTATTCAAAGTAANCCCGACNA--TAGGCGGTCCC--CAAAATCAGT-CAACATCGNT 595 ******* ****** ** *** *** *** ** *** ****** ** ***** * consensus_9383#0 TATGAATTCCAGTTTATCTATTTCATCAAATAAACATGGTTACTTTGGGCACCAAACTCA 472 consensus_9383#1 TATGAATTCCAGTTTATCTATTTCATCAAATAAACATGGTTACTTTGGGCACCAAACTCA 522 consensus_9383#2 TG---ANTCNGNTTTCT---TTTCA-CAAATAA-CATGGT-ACTGGGG------------ 634 * * ** *** * ***** ******* ****** *** ** consensus_9383#0 ATCAACTGTTAATCCTTCATTAGTTGCTGATCGTTGGTTCAGTGAATTAAATGTGGATAT 532 consensus_9383#1 ATCAACTGTTAATCCTTCATTAGTTGCTGATCGTTGGTTCAGTGAATTAAATGTGGATAT 582 consensus_9383#2 ------------------------------------------------------------ consensus_9383#0 GGAAAGGGTCTTGGAAATTTCTCGTCATCTACTTAGTTTGTATGATTTATGGCGTCGCTT 592 consensus_9383#1 GGAAAGGGTCTTGGAAATTTCTCGTCATCTACTTAGTTTGTATGATTTATGGCGTCGCTT 642 consensus_9383#2 ------------------------------------------------------------ consensus_9383#0 TGATGAACTTGCTGAAATGCCTAACATATTACTAAAAAAACTCCCACGTCCTGTCATTCA 652 consensus_9383#1 TGATGAACTTGCTGAANTNNGCTACATATTACTANA------------------------ 678 consensus_9383#2 ------------------------------------------------------------ consensus_9383#0 ATCACCGCATACTTCACAAAATTACCAGTCTGGCAATTCTGTCAATCCGACGGGTTGTAG 712 consensus_9383#1 ------------------------------------------------------------ consensus_9383#2 ------------------------------------------------------------ consensus_9383#0 TAGTACTACTGCAGCTCAATCATCTAATCTATCTAGTGGTACACAACAACAAAATCATGG 772 consensus_9383#1 ------------------------------------------------------------ consensus_9383#2 ------------------------------------------------------------ consensus_9383#0 TGGATCAATGGTTGTACCATCGGCTACAGGTGCTGTTGGTACAGGAAGTAGTAGTGGTGC 832 consensus_9383#1 ------------------------------------------------------------ consensus_9383#2 ------------------------------------------------------------ consensus_9383#0 TACGGGAACTGTTGGTAGTATACATACTATGCCGGATCATCAAACTCAACAACAACAAAG 892 consensus_9383#1 ------------------------------------------------------------ consensus_9383#2 ------------------------------------------------------------ consensus_9383#0 ATCAATGACGTCATTTAATCAACCACGTATGCATCCACAAGGTGGCGGGATGCAGCATAT 952 consensus_9383#1 ------------------------------------------------------------ consensus_9383#2 ------------------------------------------------------------ consensus_9383#0 GGGAGTTAGGTAGACGGATAAAAACAAAGCGAGTATGACTGCATATCTGTATAAAACTTA 1012 consensus_9383#1 ------------------------------------------------------------ consensus_9383#2 ------------------------------------------------------------ consensus_9383#0 GGGAGTATTTATTTATATGTATTCAGTTCTATGTACAAAAATAATATA 1060 consensus_9383#1 ------------------------------------------------ consensus_9383#2 ------------------------------------------------ |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||