cluster # 9400

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Schistosoma mansoni
cluster # 9400 cluster # 9400 Sequences # 9 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9400#0 length = 611 sequences # 4

consensus_9400#1 length = 509 sequences # 5

consensusID : consensus_9400#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 611
fasta sequence

                              [CCGATGGACAATTGTCCCAGGTGATGTTCAACCGTTGGTCGCTGAATTATTAACTGCTGCTGCAAGCCTACCACCTCCACCATCTGACATGGATTTAGAAACAGCTGAAATACCTGGACCAGAATCTGATCGACCTTCTGATATCATTATGTCCAGACCACGTTTCACTTCAATTTTACGATCCCTTCAGACTCCTTCAGGGTTCGGTACTAAATTGGACAATCTACGTCATTTAAGTCAAGGATGTTTAGAGGAATATACATCAGAAGCCCGTAAACTTGGTGTTCGAGTTGCAGAAAGTAAACGTGTTCTCGAGGATACTGTAGCACAACGTTTGCATGCAGAACAACGTTTATTTGAAGCCAGAATTGAATGTTCAGATTCATTTGTAGCGACATCACTAAAACCTCAAAATGATCTATCTACAGAACTAATTGTTCAGTCTCAGAATCCCAATAATATATCAACTTCAATATATCCTACTCCTTCTATTACTGCTGGTACATTAAGAGATGTGAATGTTAGTGAATCCAAAGATGAAAGTTCGAGCAACACTGTTCATCTTGAATAAAATAGATCTATTGGTGATATTTAAGGGCTCTAGACGCAAT]

[+] EMBL AI068091             [CCGATGGACAATTGTCCCAGGTGATGTTCAACCGTTGGTCGCTGAATTATTAACTGCTGCTGCAAGCCTACCACCTCCACCATCTGACATGGATTTAGAAACAGCTGAAATACCTGGACCAGAATCTGATCGACCTTCTGATATCATTATGTCCAGACCACGTTTCACTTCAATTTTACGATCCCTTCAGACTCCTTCAGGGTTCGGTACTAAATTGGACAATCTACGTCATTTAAGTCAAGGATGTTTAGAGGAATATACATCAGAAGCCCGTAAACTTGGTGTTCGAGTTGCAGAAAGTAAACGTGTTCTCGAGGATACTGTAGCACAACGTTTGCATGCAGAACAACGTTTATTTGAAGCCAGAATTGAATGTTCAGATTCATTTGTAGCGACATCACTAAAACCTCAAAATGATCTATCTACAGAACTAATTGTTCA                                                                                                                                                                          ]
[+] EMBL AI068191             [      GACAATTGTCCCAGGTGATGTTCAACCGTTGGTCGCTGAATTATTAACTGCTGCTGCAAGCCTACCACCTCCACCATCTGACATGGATTTAGAAACAGCTGAAATACCTGGACCAGAATCTGATCGACCTTCTGATATCATTATGTCCAGACCACGTTTCACTTCAATTTTACGATCCCTTCAGACTCCTTCAGGGTTCGGTACTAAATTGGACAATCTACGTCATTTAAGTCAAGGATGTTTAGAGGAATATACATCAGAAGCCCGTAAACTTGGTGTTCGAGTTGCAGAAAGTAAACGTGTTCTCGAGGATACTGTAGCACAACGTTTGCATGCAGAACAACGTTTATTTGAAGCCAGAATTGAATGTTCAGATTCATTTGTAGCGACATCACTAAAACCTCAAAATGATCTATCTACAGAACTAATTGTTCAGTCTCAGAATCCCAATAATATATCAACTTCAATATATCCTACTCCTTCTATTACTGCTGGTACATTAAGAGATGTGAATGTTAGTGAATCCAAAGATGAAAGTTCGAGCAACACTGTTCATCTTGAATAAAATAGATCTATTGGTGATATTTAAGGGCTCTAGACGCAAT]
[+] EMBL AI067246             [      GACAATTGTCCCAGGTGATGTTCAACCGTTGGTCGCTGAATTATTAACTGCTGCTGCAAGCCTACCACCTCCACCATCTGACATGGATTTAGAAACAGCTGAAATACCTGGACCAGAATCTGATCGACCTTCTGATATCATTATGTCCAGACCACGTTTCACTTCAATTTTACGATCCCTTCAGACTCCTTCAGGGTTCGGTACTAAATTGGACAATCTACGTCATTTAAGTCAAGGATGTTTAGAGGAATATACATCAGAAGCCCGTAAACTTGGTGTTCGAGTTGCAGAAAGTAAACGTGTTCTCGAGGATACTGTAGCACAACGTTTGCATGCAGAACAACGTTTATTTGAAGCCAGAATTGAATGTTCAGATTCATTTGTAGCGACATCACTAAAACCTCAAAATGATCTATCTACAGAACTAATTGTTCAGTCTCAGAATCCCAATAATATATCAACTTCAATATATCCTACTCCTTCTATTACTGCTGGTACATTAAGAGATGTGAATGTTAGTGAATCCAAAGATGAAAGTTCGAGC                                                             ]
[+] EMBL AI068137             [      GACAATTGTCCCAGGTGATGTTCAACCGTTGGTCGCTGAATTATTAACTGCTGCTGCAAGCCTACCACCTCCACCATCTGACATGGATTTAGAAACAGCTGAAATACCTGGACCAGAATCTGATCGACCTTCTGATATCATTATGTCCAGACCACGTTTCACTTCAATTTTACGATCCCTTCAGACTCCTTCAGGGTTCGGTACTAAATTGGACAATCTACGTCATTTAAGTCAAGGATGTTTAGAGGAATATACATCAGAAGCCCGTAAACTTGGTGTTCGAGTTGCAGAAAGTAAACGTGTTCTCGAGGATACTGTAGCACAACGTTTGCATGCAGAACAACGTTTATTTGAAGCCAGAATTGAATGTTCAGA                                                                                                                                                                                                                                      ]




>consensus_9400#0
CCGATGGACAATTGTCCCAGGTGATGTTCAACCGTTGGTCGCTGAATTATTAACTGCTGC
TGCAAGCCTACCACCTCCACCATCTGACATGGATTTAGAAACAGCTGAAATACCTGGACC
AGAATCTGATCGACCTTCTGATATCATTATGTCCAGACCACGTTTCACTTCAATTTTACG
ATCCCTTCAGACTCCTTCAGGGTTCGGTACTAAATTGGACAATCTACGTCATTTAAGTCA
AGGATGTTTAGAGGAATATACATCAGAAGCCCGTAAACTTGGTGTTCGAGTTGCAGAAAG
TAAACGTGTTCTCGAGGATACTGTAGCACAACGTTTGCATGCAGAACAACGTTTATTTGA
AGCCAGAATTGAATGTTCAGATTCATTTGTAGCGACATCACTAAAACCTCAAAATGATCT
ATCTACAGAACTAATTGTTCAGTCTCAGAATCCCAATAATATATCAACTTCAATATATCC
TACTCCTTCTATTACTGCTGGTACATTAAGAGATGTGAATGTTAGTGAATCCAAAGATGA
AAGTTCGAGCAACACTGTTCATCTTGAATAAAATAGATCTATTGGTGATATTTAAGGGCT
CTAGACGCAAT

consensusID : consensus_9400#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 509
fasta sequence

                              [GCCTACCACCTCCACCATCTGACATGGATTTAGAAACAGCTGAAATACCTGGACCAGAATCTGATCGACCTTCTGATATCATTATGTCCAGACCACGTTTCACTTCAATCCCGACTAGTAATTGGTCATCTTCAGTAACAAGTATTTCTAGAATATCATCTGGTGGCCTACTTAATGAGTTGACTACAACAGCAGATAATTTATCCACACTGCAAATTAAATCAGATTTCAGTGAAGATCAAACAATTGTATCAGATATAGAACATAAAGAAACTGAAGAACATATATCAATTGTTAC-TAGTTCAATTTTACGATCCCTTCAGACTCCTTCAGGGTTCGGTACTAAATTGGACAATCTACGTCATTTAAGTCAAGGATGTTTAGAGGAATATACATCAGAAGCCCGTAAACTTGGTGTTCG-AGTTG-CAG-AAAGTAAACGTGTTCTCGAGGATACTGTAGCACAACGTTTGCATGCAGAACAACGTTTATTTGAAGCCAGGATTGAATGT]

[+] EMBL CD163131             [GCCTACCACCTCCACCATCTGACATGGATTTAGAAACAGCTGAAATACCTGGACCAGAATCTGATCGACCTTCTGATATCATTATGTCCAGACCACGTTTCACTTCAATCCCGACTAGTAATTGGTCATCTTCAGTAACAAGTATTTCTAGAATATCATCTGGTGGCCTACTTAATGAGTTGACTACAACAGCAGATAATTTATCCACACTGCAAATTAAATCAGATTTCAGTGAAGATCAAACAATTGTATCAGATATAGAACATAAAGAAACTGAAGAACATATATCAATTGTTAC TAGTTCAATTTTACGATCCCTTCAGACTCCTTCAGGGTTCGGTACTAAATTGGACAATCTACGTCA                                                                                                                                                    ]
[+] EMBL CD178967             [                                                                                                                                       TAACAAGTATTTCTAGAATATCATCTGGTGGCCTACTTAATGAGTTGACTACCACAACAGATGATTCATCCACACTGCAAATTAAATCACATTTCAGTGAAGATCAAACAATTGTATCAGATATAGAACATAAAGAAGCTGAAGAACATATATCACTTGTTAC TAGTTCAATTTTACAATCCCTTCAG                                                                                                                                                                                             ]
[+] EMBL CD063071             [                                                                                                                                                                                            ACAGCAGATAATTTATCCACACTGCAAATTAAATCAGATTTCAGTGAAGATCAAACAATTGTATCAGATATAGAACATAAAGAAACTGAAGAACATATATCAATTGTTAC TAGTTCAATTTTACGATCCCTTCAGACTCCTTCAGGGTTCGGTACTAAATTGGACAATCTACGTCATTTAAGTCAAGGATGTTTAGAGGAATATAGATCAGAAGCCCGTAAACTTGGTGTTCG AGTTG CAG AAAGTAAACGTGTTC                                                                 ]
[-] EMBL CD063218             [                                                                                                                                                                                             CAGCAGATAATTTATCCACCCTGCAAATTAAATCAGATTTCAGTGAAGATCAAACAATTGTATCAGATATAGAACATAAAGAAACTGAAGAACATATATCAATTGTTAC TAGTTCAATTTTACGATCCCTTCAGACTCCTTCAGGGTTCGGTACTAAATTGGACAATCTACGTCATTTAAGTCAAGGATGTTTAGAGGAATATACATCAGAAGCCCGTAAACTTGGTGTTCG AGTTG CAG AAAGTAAACGTGTTCTCGAGGATACTGTAGCACAACGTTTGCATGCAGAACAACGTTTATTTGAAGCCAGGATTGAATGT]
[-] EMBL CD063283             [                                                                                                                                                                                             CAGCAGATAATTTATCCACACTGCAAATTAAATCAGATTTCAGTGAAGATCAAACAATTGTATCAGATATAGAACATAAAGAAACTGAAGAACATATATCAGTTGTTACGTAGTTCAATTTTACGATCCCTTCAGACTCCTTCAGGGTTCGGTACTAAATTGGACAATCTACGTCATTTAAGTCAAGGATGTTTAGAGGAATATACATCAGAAGCCCGTAAACTTGGTGTTCGCAGTTGCCAGTAAAGTAAg                                                                        ]




>consensus_9400#1
GCCTACCACCTCCACCATCTGACATGGATTTAGAAACAGCTGAAATACCTGGACCAGAAT
CTGATCGACCTTCTGATATCATTATGTCCAGACCACGTTTCACTTCAATCCCGACTAGTA
ATTGGTCATCTTCAGTAACAAGTATTTCTAGAATATCATCTGGTGGCCTACTTAATGAGT
TGACTACAACAGCAGATAATTTATCCACACTGCAAATTAAATCAGATTTCAGTGAAGATC
AAACAATTGTATCAGATATAGAACATAAAGAAACTGAAGAACATATATCAATTGTTACTA
GTTCAATTTTACGATCCCTTCAGACTCCTTCAGGGTTCGGTACTAAATTGGACAATCTAC
GTCATTTAAGTCAAGGATGTTTAGAGGAATATACATCAGAAGCCCGTAAACTTGGTGTTC
GAGTTGCAGAAAGTAAACGTGTTCTCGAGGATACTGTAGCACAACGTTTGCATGCAGAAC
AACGTTTATTTGAAGCCAGGATTGAATGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9400#0      CCGATGGACAATTGTCCCAGGTGATGTTCAACCGTTGGTCGCTGAATTATTAACTGCTGC 60
consensus_9400#1      ------------------------------------------------------------
                                                                                  

consensus_9400#0      TGCAAGCCTACCACCTCCACCATCTGACATGGATTTAGAAACAGCTGAAATACCTGGACC 120
consensus_9400#1      -----GCCTACCACCTCCACCATCTGACATGGATTTAGAAACAGCTGAAATACCTGGACC 55
                           *******************************************************

consensus_9400#0      AGAATCTGATCGACCTTCTGATATCATTATGTCCAGACCACGTTTCACTTCAATTTTACG 180
consensus_9400#1      AGAATCTGATCGACCTTCTGATATCATTATGTCCAGACCACGTTTCACTTCAATCCCGAC 115
                      ******************************************************      

consensus_9400#0      ATCCCTTCAGACTCCTTCAGGGTTCGGTACTAAATTGGACAATCTACGTCATTTAAGTCA 240
consensus_9400#1      TAGTAATTGGTCATCTTCAGTAACAAGTATT--TCTAGA------ATATCATCTGGT--- 164
                            *  * *  ******      *** *    * **      *  **** *      

consensus_9400#0      AGGATGTTTAGAGGAATATACATCAGAAGCCCGTAAACTTGGTGTTCGAGTTGCAGAAAG 300
consensus_9400#1      GGCCTACTTA-ATGAGTTGACTACAACAGCAGATAATTT----ATCCACACTGCA--AAT 217
                       *  *  *** * ** *  **  **  ***   ***  *     * *    ****  ** 

consensus_9400#0      TAAACGTGTTCTCGAGGATACTGTAGCACAACGTTTGCATGCAGAACAACGTTTATTTGA 360
consensus_9400#1      TAAATCAGATTTCAGTGAAGATCAAACAATTGTATCAGATATAGAACATAAAGAAACTGA 277
                      ****   * * **   **   *  * **      *   **  ******      *  ***

consensus_9400#0      AG--CCAGAATTGAATGTT-CAGATTCATTTGTAGCGACATCACTAAAACCTCAAAATGA 417
consensus_9400#1      AGAACATATATCAATTGTTACTAGTTCAATTTTA-CGATCCCTTCAGACTCCTTCAGGGT 336
                      **  *    **  * **** *   **** ** ** ***   *   * *  *    *  * 

consensus_9400#0      TCTATCTACAGAACTAATTGTTCAGTCTCAGA-ATCCCAATAATATATCAACTTCAATAT 476
consensus_9400#1      TCGG--TACTAAATTGGACAATCTACGTCATTTAAGTCAAGGATGTTTAGAGGAATATAC 394
                      **    ***  ** *      **    ***   *   ***  ** * *  *     *** 

consensus_9400#0      ATCCTACTCCTTCTATTACTGCTGGTACATTAAGAGATGTGAATGTTAGTGAATCCAAAG 536
consensus_9400#1      ATCAGAAGCCCGTAAACTTGGTGTTCGAGTTGCAGAAAGTAAAC----GTGTTCTCGAGG 450
                      ***  *  **    *     *        **     * ** **     ***    * * *

consensus_9400#0      ATGAAAGTTCGAGCAACACTGTTCATCTTGAATAAAATAGATCTATTGGTGATATTTAAG 596
consensus_9400#1      AT--ACTGTAGCACAACGTT-TGCATGCAGAACAACGTTTATTTGAAGCCAGGATTGAAT 507
                      **  *   * *  ****  * * ***   *** **  *  ** *   *     *** ** 

consensus_9400#0      GGCTCTAGACGCAAT 611
consensus_9400#1      GT------------- 509
                      *