These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9404#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 595 fasta sequence [CGAGGGTCATCAGCTGCAAGCGTATTTAGCTATGAGAAATGATTTTTTGGATATACCAATTTTGTGGGTGACTGCGTATGTTTATTTCTATATCAAAGCCAAGTGTGATGATCCAGCGATGACTAGGGTTATGATTGTCTTAGGATCTGGTGGACACA-CTGCTGAAATGCTCTCATATACTTCTGTATTGACTTGTAAATATCAGCCACGTTTATACGTTATCGCGGCGACTGACTCTATGAGTGAACAGAAGGTCTTGGATTTAGAGAACAAGTGTGATACTAAATTCAGCATAAACCGCATACCAAGGGCTCGAGAAGTAAAACAGTCATATGCCAGTAGCATCTTCAGTACCTTAGTGTCTTGTCTATTTGCGTTCCCCATCGTCACCATTTTTAGGGCGAAATTGATTTTGTGTAATGGTCCTGGGACATGTATCCCCATATGCTTCGTGGCTATTTTACTTCACATACTGAGAATTCATTCAACTCTTATAATTTTTGTTGAAAGTATTTGCCGTACCAAAACTTTATCATTATCTGGGAAAATTCTATATTATACTCGTTTAGTAAATGTAATTGTTCAGTGATGCCCC] [+] EMBL CD083598 [CGAGGGTCATCAGCTGCAAGCGTATTTAGCTATGAGAAATGATTTTTTGGATATACCAATTTTGTGGGTGACTGCGTATGTTTATTTCTATATCAAAGCCAAGTGTGATGATCCAGCGATGACTAGGGTTATGATTGTCTTAGGATCTGGTGGACACA CTGCTGAAATGCTCTCATATACTTCTGTATTGACTTGTAAATATCAGCCACGTTTATACGTTATCGCGGCGACTGACTCTATGAGTGAACAGAAGGTCTTGGATTTAGAGAACAAGTGTGATACTAAATTCAGCATAAAGCGCATACCAAGGGCTCGAGAAGTAAAACAGTCATATGCCAGTAGCATCTTCAGTACCTTAGTGTCTTGTCTATTTGCGTTTCCCATCGTCACCATTTTTAGGGCGAAATTGATTTTGTGTAATGGTCCTGGGACATGTATCCCCATATGCTTCGTGGCTATTTTACTTCACATACTGAGAATTCATTCAACTCTTATAATTTTTGTTGAAAGTATTTGCCGTACCAAAACTTTATCATTATCTGGGAAAATTta ] [-] EMBL CD179607 [ GGTTATGATTGTTTTAGGATCTGGTGGACACA CTCCTGAAATGCTCTCATATACTTCTGTATTGACTTGTAAATATCAGCCACGTTTATACGTTAT ] [+] EMBL CD134349 [ TGTCTTAGGATCTGGTGGACACANCTGCTGAAATGCTCTCATATACTTCTGTATTGACTTGTAAATATCAGCCACGTTTATACGTTATCGCGGCGACTGACTCTATGAGTGAACAGAAGGTCTTGGATTTAGAGAACAAGTGTGATACTAAATTCAGCATAAACCGCATACCAAGGGCTCGAGAAGTAAAACAGTCATATGCCAGTAGCATCTTCAGTACCTTAGTGTCTTGTCTATTTGCGTTCCCCATCGTCACCATTTTTAGGGCGAAATTGATTTTGTGTAATGGTCCTGGGACATGTATCCCCATATGCTTCGTGGCTATTTTACTTCACATACTGAGAATTCATTCAACTCTTATAATTTTTGTTGAAAGTATTTGCCGTACCAAAACTTTATCATTATCTGGGAAAATTCTATATTATACTCGTTTAGTAAATGTAATTGTTCAGTGATGCC ] [+] EMBL CD134370 [ TGTCTTAGGATCTGGTGGACACA CTGCTGAAATGCTCTCATATACTTCTGTATTGACTTGTAAATATCAGCCACGTTTATACGTTATCGCGGCGACTGACTCTATGAGTGAACAGAAGGTCTTGGATTTAGAGAACAAGTGTGATACTAAATTCAGCATAAACCGCATACCAAGGGCTCGAGAAGTAAAACAGTCATATGCCAGTAGCATCTTCAGTACCTTAGTGTCTTGTCTATTTGCGTTCCCCATCGTCACCATTTTTAGGGCGAAATTGATTTTGTGTAATGGTCCTGGGACATGTATCCCCATATGCTTCGTGGCTACTTTACTTCACATACTGAGAATTCATTCAACTCTTATAATTTTTGTTGAAAG ATTTGCCGAACAAAACCTTTAT ATTATCTGGGAAAATTCTATATTATACTCCTTTAATAAATGTAATTGGTTAGTGATGCCCC] consensusID : consensus_9404#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 584 fasta sequence [GCGTATTTAGCTATGAGAAATGATTTTTTGGATAATACCAATTTTGTGGGTGACTGCGTATGTTTATTTCTATATCAAAGCCAAGTGTGATGATCCAGCGATGACTAGGGTTATGATTGTCTTAGGATCTGGTGGACACACTGCTGAAATGCTCTCATATACTTCTGTATTGACTTGTAAATATCAGCCACGTTTATACGTTATCGCGGCGACTGACTCTATGAGTGAACAGAAGGTCTTGGATTTAGAGAACAAGTGTGATACTAAATTCAGCATAAAGCGCATACCAAGGGCTCGAGAAGTAAAACAGTCATATGCCAGTAGCATCTTCAGTACCTTAGTGTCTCGTCTATTTGCGTTTCCCATCGTCACCATTTTTAGGGCGAAATTGATACTGAGAATTCATTCAACTCTTATAATTTTTGTTGAAAGTATTTGCCGTACCAAAACTTTATCATTATCCGGGAAAATTTTATATTATACTCGTTTAGTAGATGTAATTGTTCAGTGG-CCAGAATTGAAGACAAAATATCCAAGATCAATTTACTTAGGACTTTTATCATGAACTACTGCATCCAATCATT] [-] EMBL CD179581 [GCGTATTTAGCTATGAGAAATGATTTTTTGGATAATACCAATTTTGTGGGTGACTGCGTATGTTTATTTCTATATCAAAGCCAAGTGTGATGATCCAGCGATGACTAGGGTTATGATTGTCTTAGGATCTGGTGGACACACTGCTGAAATGCTCTCATATACTTCTGTATTGACTTGTAAATATCAGCCACGTTTATACGTTATCGCGGCGACTGACTCTATGAGTGAACAGAAGGTCTTGGATTTAGAGAACAAGTGTGATACTAAATTCAGCATAAAGCGCATACCAAGGGCTCGAGAAGTAAAACAGTCATATGCCAGTAGCATCTTCAGTACCTTAGTGTCTCGTCTATTTGCGTTTCCCATCGTCACCATTTTTAGGGCGAAATTGATACTGAGAATTCATTCAACTCTTATAATTTTTGTTGAAAGTATTTGCCGTACCAAAACTTTATCATTATCCGGGAAAATTTTATATTATACTCGTTTAGTAGATGTAATTGTTCAGTGGNCCAGAATTGAAGACAAAATATCCAAGATCAATTTACTTAGGACTTTTATCATGAACTACTGCATCCAATCATT] [-] EMBL CD179596 [GCGTATTTAGCTATGAGAAATGATTTTTTGGATAATACCAATTTTGTGGGTGACTGCGTATGTTTATTTCTATATCAAAGCCAAGTGTGATGATCCAGCGATGACTAGGGTTATGATTGTCTTAGGATCTGGTGGACACACTGCTGAAATGCTCTAGTATACTTCTGTATTGACTTGTAAATATCAGCCACGTTTATACGTTATCGCGGCGACTGACTCTATGAGTGAACAGAAGGTCTTGGATTTAGAGAACAAGTGTGATACTAAATTCAGCATAAAGCGCATACCAAGGGCTCGAGAAGTAAAACAGTCATATGCCAGTAGCATCTTCAGTACCTTAGTGTCTCGTCTATTTGCGTTTCCCATCGTCACCATTTTTAGGGCGAAATTGATACTGAGAATTCATTCAACTCTTATAATTTTTGTTGAAAGTATTTGCCGTACCAAAACTTTATCATTATCCGGGAAAATTTTATATTATACTCGTTTAGTAGATGTAATTGTTCAGTGG CCAGAATTGAAGACAAAATATCCAAGATCAATTTACTTAGGACTTTTATCATGAACTACTGCATCCAATCATT] [-] EMBL CD179606 [GCGTATTTAGCTATGAGAAATGATNTTTTGGATAATACCAATTTTGTGGGTGACTGCGTATGTTTATTTCTATATCAAAGCCAAGTGTGATGATCCAGCGATGACTAGGGTTATGATTGTCTTAGGATCTGGTGGACACACTGCTGAAATGCTCTCATATACTTCTGTATTGACTTGTAAATATCAGCCACGTTTATACGTTATCGCGGCGACTGACTCTATGAGTGAACAGAAGGTCTTGGATTTAGAGAACAAGTGTGATACTAAA CATAAAGCGCATACCAAGGGCTCGAGAAGTAAAACAGTCATATGCCAGTAGCATCTTCAGTACCTTAGTGTCTTGTCTATTTGCGTTTCCCATCGTCACCATTTTTAGGGCGAAATTGATACTGAGAATTCATTCAACTCTTATAATTTTTGTTGAAAGTATTTGCCGTACCAAAACTTTATCATTATCTGGGAAAATTTTATATTATACTCGTTTAGTAGATGTAATTGTTCAGTGG CCAGAATTGAAGACAAAATATCCAAGATCAATTTACTTAGGACTTTTATCATAAACTACTGCATCCAATCATT] consensusID : consensus_9404#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 326 fasta sequence [CGAAGGTCATCAGCTGCAAGCGTATTTAGCTATGAGAAATGATATTTTGGATAATACCAATTTTGTGGGTGACTGCGTATGTTTATTTCTATATCAAAGCCAAGTGTGATGATCCAGCGATGACTAGGGTTATGATTGTCTTAGGATCTGGTATATGTTTATTTCATACTTCATGTTAGGTGGACACACTGCTGAAATGCTCTCATATACTTCTGTATTGACTTGTAAATATCAGCCACGTTTATACGTTATCGCGGCGAGTGACTCTATGAGTGATACAGAAGGTCTAGGATTTATGAGAACAAGTGTGATACTAAATTCAGCAT] [+] EMBL CD148204 [CGAAGGTCATCAGCTGCAAGCGTATTTAGCTATGAGAAATGATATTTTGGATAATACCAATTTTGTGGGTGACTGCGTATGTTTATTTCTATATCAAAGCCAAGTGTGATGATCCAGCGATGACTAGGGTTATGATTGTCTTAGGATCTGGTATATGTTTATTTCATACTTCATGTTAGGTGGACACACTGCTGAAATGCTCTCATATACTTCTGTATTGACTTGTAAATATCAGCCACGTTTATACGTTATCGCGGCGAGTGACTCTATGAGTGATACAGAAGGTCTAGGATTTATGAGAACAAGTGTGATACTAAATTCAGCAT] consensusID : consensus_9404#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 141 fasta sequence [NCAAGTGTGATGATCCAGNGATGTACTAGGGTTATGATTGTCTTAGGATCTGGTGGACACACTGCTGAAATGCTCTCATATTCTTCTNTATNGACTCGNNAATATCAGNCACGTCNNTNCGCTTNTCNNCGGCGCACTGAC] [+] EMBL SM6632 [NCAAGTGTGATGATCCAGNGATGTACTAGGGTTATGATTGTCTTAGGATCTGGTGGACACACTGCTGAAATGCTCTCATATTCTTCTNTATNGACTCGNNAATATCAGNCACGTCNNTNCGCTTNTCNNCGGCGCACTGAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9404#1 -------------------GCGTATTTAGCTATGAGAAATGATTTTTTGGATAATACCAA 41 consensus_9404#3 ------------------------------------------------------------ consensus_9404#0 CGAGGGTCATCAGCTGCAAGCGTATTTAGCTATGAGAAATGATTTTTTGGATA-TACCAA 59 consensus_9404#2 CGAAGGTCATCAGCTGCAAGCGTATTTAGCTATGAGAAATGATATTTTGGATAATACCAA 60 consensus_9404#1 TTTTGTGGGTGACTGCGTATGTTTATTTCTATATCAAAGCCAAGTGTGATGATCCAGCGA 101 consensus_9404#3 ---------------------------------------NCAAGTGTGATGATCCAGNGA 21 consensus_9404#0 TTTTGTGGGTGACTGCGTATGTTTATTTCTATATCAAAGCCAAGTGTGATGATCCAGCGA 119 consensus_9404#2 TTTTGTGGGTGACTGCGTATGTTTATTTCTATATCAAAGCCAAGTGTGATGATCCAGCGA 120 ***************** ** consensus_9404#1 TG-ACTAGGGTTATGATTGTCTTAGGATCTGGT--------------------------- 133 consensus_9404#3 TGTACTAGGGTTATGATTGTCTTAGGATCTGGT--------------------------- 54 consensus_9404#0 TG-ACTAGGGTTATGATTGTCTTAGGATCTGGT--------------------------- 151 consensus_9404#2 TG-ACTAGGGTTATGATTGTCTTAGGATCTGGTATATGTTTATTTCATACTTCATGTTAG 179 ** ****************************** consensus_9404#1 --GGACACACTGCTGAAATGCTCTCATATACTTCTGTATTGACTTGTAAATATCAGCCAC 191 consensus_9404#3 --GGACACACTGCTGAAATGCTCTCATATTCTTCTNTATNGACTCGNNAATATCAGNCAC 112 consensus_9404#0 --GGACACACTGCTGAAATGCTCTCATATACTTCTGTATTGACTTGTAAATATCAGCCAC 209 consensus_9404#2 GTGGACACACTGCTGAAATGCTCTCATATACTTCTGTATTGACTTGTAAATATCAGCCAC 239 *************************** ***** *** **** * ******** *** consensus_9404#1 GTTTATACG--TTATCGCGGCG-ACTGACTCTATGAGTGA-ACAGAAGGTCTTGGATTTA 247 consensus_9404#3 GTCNNTNCGCTTNTCNNCGGCGCACTGAC------------------------------- 141 consensus_9404#0 GTTTATACG--TTATCGCGGCG-ACTGACTCTATGAGTGA-ACAGAAGGTCTTGGATTTA 265 consensus_9404#2 GTTTATACG--TTATCGCGGCG-AGTGACTCTATGAGTGATACAGAAGGTCTAGGATTTA 296 ** * ** * ***** * **** consensus_9404#1 -GAGAACAAGTGTGATACTAAATTCAGCATAAAGCGCATACCAAGGGCTCGAGAAGTAAA 306 consensus_9404#3 ------------------------------------------------------------ consensus_9404#0 -GAGAACAAGTGTGATACTAAATTCAGCATAAACCGCATACCAAGGGCTCGAGAAGTAAA 324 consensus_9404#2 TGAGAACAAGTGTGATACTAAATTCAGCAT------------------------------ 326 consensus_9404#1 ACAGTCATATGCCAGTAGCATCTTCAGTACCTTAGTGTCTCGTCTATTTGCGTTTCCCAT 366 consensus_9404#3 ------------------------------------------------------------ consensus_9404#0 ACAGTCATATGCCAGTAGCATCTTCAGTACCTTAGTGTCTTGTCTATTTGCGTTCCCCAT 384 consensus_9404#2 ------------------------------------------------------------ consensus_9404#1 CGTCACCATTTTTAGGGCGAAATTGATACTGAGAATTCATTC-AACTCTTATAATTTTTG 425 consensus_9404#3 ------------------------------------------------------------ consensus_9404#0 CGTCACCATTTTTAGGGCGAAATTGATTTTGTGTAATGGTCCTGGGACATGTATCCCCAT 444 consensus_9404#2 ------------------------------------------------------------ consensus_9404#1 TTGAAAGTATTTGCCGTACCAAAACTTTATCATTATCCGGGAAAATTTTATATTATACTC 485 consensus_9404#3 ------------------------------------------------------------ consensus_9404#0 ATGCTTCGTGGCTATTTTACTTCACATACTGAGAATTCATTCAACTCTTATAATTTTTGT 504 consensus_9404#2 ------------------------------------------------------------ consensus_9404#1 GTTTAGTAGATGTAATTGTTCAGTGGCCAGAATTGAAGACAAAATATCCAAGATCAATTT 545 consensus_9404#3 ------------------------------------------------------------ consensus_9404#0 TGAAAGTATTTGCCGTACCAAAACTTTATCATTATCTGGGAAAATTCTATATTATACTCG 564 consensus_9404#2 ------------------------------------------------------------ consensus_9404#1 ACTTAGGACTTTTATCATGAACTACTGCATCCAATCATT 584 consensus_9404#3 --------------------------------------- consensus_9404#0 TTTAGTAAATGTAATTGTTCAGTGATGCCCC-------- 595 consensus_9404#2 --------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||