cluster # 9423

These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 9423 cluster # 9423 Sequences # 9 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9423#0 length = 463 sequences # 7

consensus_9423#1 length = 246 sequences # 1
consensus_9423#2 length = 235 sequences # 1

consensusID : consensus_9423#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 7
consensus length = 463
fasta sequence

                              [NNNNNNNNNNNNNNNNNNNAATTGATAAAGAACGTTTATTCAAAAGTAAAGTATCTAACAATTTACATGTTTGTAACTATAAGTTTACAGTTCAAAAATTACAATGTAAACTGTATCTTACATTGTAAAATAATGAGCGATATATTACAGCGGGGTCGTTAGTGGTGGTTAATTTTTGTTGGATTCTAGTATATCTTTGGCCTGATTGATCTTAGCAGCCAAGTATGGGGAACCACCTTTATCGGGATGGTTAAGAATCATGATCTTCTTATGAGCATCCCTAATTTTATTTTTACTTGACTGTTGACTCACACCAAGAATTAGGGCAGCTTCACGCCGGGACATATTTTGTTCAAATCCCCCACGATAATACTTAGAGCCACTCAGTCCAGATATACTGAAAA-TTNTTGCATACAACAAGCATTCATATTCCGTGTTATATAACGTCCAGCAACTCCTACGG]

[+] EMBL AI394780             [NNNNNNNNNNNNNNNNNNNAATTGATAAAGAACGTTTATTCAAAAGTAAAGTATCTAACAATTTACATGTTTGTAACTATAAGTTTACAGTTCAAAAATTACAATGTAAACTGTATCTTACATTGTAAAATAATGAGCGATATATTACAGCGGGGTCGTTAGTGGTGGTTAATTTTTGTTGGATTCTAGTATATCTTTGGCCTGATTGATCTTAGCAGCCAAGTATGGGGAACCACCTTTATCGGGAATGTTAAGAATCATGATCTTCTTATGAGCATCCCTAATTTTATTTTTACTTGACTGTTGACTCACACCAAGAATTAGGGCAGCTTCACGCCGGGACATATTTTGTTCAAATCCCCCACGATAATACTTAGAGCCACTCAGTCCAGATATACTGAAAA TTNTTGCATACAACAA                                           ]
[+] EMBL BG930261             [                                                                                                                                                          GTCGNTAGCGGTGGTTAATTTTTGTTGGATT TAGTATATCTTTGGCCTGATTGATCTTAGCAGCCAAGTATGGGGAACCACCTTTATCGGGATGGTTAAGAATCATGATCTTCTTATGAGCATCCCTATGTTTA TTTTACTTGACTGTTGACTCACACCAAGAATTATGGCATCTTCACGCCGGGACATATTTTGTTTATAACCCCCACGATAATTCTTAGA                                                                                      ]
[-] EMBL BG931970             [                                                                                                                                                           TCGTTAGTGGTGGTTAATTTTTGTTGGATTCTAGTATATCTTTGGCCTGATTGATCTTAGCAGCCAAGTATGGGGAACCACCTTTATCGGGATGGTTAAGAATCATGATCTTCTTATGAGCATCCCTAATTTTATTTTTACTTGACTGTTGACTCACACCAAGAATTAGGGCAGCTTCACGCCGGGACATATTTTGTTCAAATCCCCCACGATAATACTTAGAt                                                                                     ]
[-] EMBL BG931987             [                                                                                                                                                           TCGTTAGTGGTGGTTAATTTTTGTTGGATTCTAGTATATCTTTGGCCTGATTGATCTTAGCAGCCAAGTATGGGGAACCACCTTTATCGGGATGGTTAAGAATCATGATCTTCTTATGAGCATCCCTAATTTTATTTTTACTTGACTGTTGACTCACACCAAGAATTAGGGCAGCTTCACGCCGGGACATATTTTGTTCAAATCCCCCACGATAATACTTAGAt                                                                                     ]
[-] EMBL BG930547             [                                                                                                                                                           TCGTTAGTGGTGGTTAATTTTTGTTGGATTCTAGTATATCTTTGGCCTGATTGATCTTAGCAGCCAAGTATGGGGAACCACCTTTATCGGGATGGTTAAGAATCATGATCTTCTTATGAGCATCCCTAATTTTATTTTTACTTGACTGTTGACTCACACCAAGAATTAGGGCAGCTTCACGCCGGGACATATTTTGTTCAAATCCCCCACGATAATACTTAGAG                                                                                     ]
[-] EMBL BG930630             [                                                                                                                                                           TCGTTAGTGGTGGTTAATTTTTGTTGGATTCTAGTATATCTTTGGCCTGATTGATCTTAGCAGCCAAGTATGGGGAACCACCTTTATCGGGATGGTTAAGAATCATGATCTTCTTATGAGCATCCCTAATTTTATTTTTACTTGACTGTTGACTCACACCAAGAATTAGGGCAGCTTCACGCCGGGACATATTTTGTTCAAATCCCCCACGATAATACTTAGAc                                                                                     ]
[+] EMBL CD179379             [                                                                                                                                                                       GTTAATTTTTGTTGGATTCTAGTATATCTTTGGCCTGATTGATCTTAGCAGCCAAGTATGGGGAACCACCTTTATCGGGATGGTTAAGAATCATGATCTTCTTATGAGCATCCCTAATTTTATTTTTACTTGACTGTCGACTCACACCAAGAATTAGGGCAGCTTCACGCCGGGACATATTTTGTTCAAATCCCCCACGATAATACTTAGAGCCACTCAGTCCAGATATACTGAAAAGTTTTTGCATACTACCAGCATTCATATTCCGTGTTATATAACGTCCAGCAACTCCTACGG]




>consensus_9423#0
NNNNNNNNNNNNNNNNNNNAATTGATAAAGAACGTTTATTCAAAAGTAAAGTATCTAACA
ATTTACATGTTTGTAACTATAAGTTTACAGTTCAAAAATTACAATGTAAACTGTATCTTA
CATTGTAAAATAATGAGCGATATATTACAGCGGGGTCGTTAGTGGTGGTTAATTTTTGTT
GGATTCTAGTATATCTTTGGCCTGATTGATCTTAGCAGCCAAGTATGGGGAACCACCTTT
ATCGGGATGGTTAAGAATCATGATCTTCTTATGAGCATCCCTAATTTTATTTTTACTTGA
CTGTTGACTCACACCAAGAATTAGGGCAGCTTCACGCCGGGACATATTTTGTTCAAATCC
CCCACGATAATACTTAGAGCCACTCAGTCCAGATATACTGAAAATTNTTGCATACAACAA
GCATTCATATTCCGTGTTATATAACGTCCAGCAACTCCTACGG

consensusID : consensus_9423#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 246
fasta sequence

                              [TGGTATTGTGATAGATGCGGGCTCGTTAGTGGTGGTTAATTTTTGTTGGATTCTAGTATATCTTTGGCCTGATTGATCTTAGCAGCCAAGTATGGGGAACCACCTTTATCGGGATGGTTAAGAATCATGATCTTCTTATGAGCATCCCTAATTTTATTTTTACTTGACTGTTGACTCACACCAAGAATTAGGGCAGCTTCACGCCGGGACATATTTTGTTCAAATCCCTCACGATAATACTTAGAT]

[-] EMBL BG930967             [TGGTATTGTGATAGATGCGGGCTCGTTAGTGGTGGTTAATTTTTGTTGGATTCTAGTATATCTTTGGCCTGATTGATCTTAGCAGCCAAGTATGGGGAACCACCTTTATCGGGATGGTTAAGAATCATGATCTTCTTATGAGCATCCCTAATTTTATTTTTACTTGACTGTTGACTCACACCAAGAATTAGGGCAGCTTCACGCCGGGACATATTTTGTTCAAATCCCTCACGATAATACTTAGAT]




>consensus_9423#1
TGGTATTGTGATAGATGCGGGCTCGTTAGTGGTGGTTAATTTTTGTTGGATTCTAGTATA
TCTTTGGCCTGATTGATCTTAGCAGCCAAGTATGGGGAACCACCTTTATCGGGATGGTTA
AGAATCATGATCTTCTTATGAGCATCCCTAATTTTATTTTTACTTGACTGTTGACTCACA
CCAAGAATTAGGGCAGCTTCACGCCGGGACATATTTTGTTCAAATCCCTCACGATAATAC
TTAGAT

consensusID : consensus_9423#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 235
fasta sequence

                              [GTTAATTTTTCTAGGATTATAGTATATCTTTGGCCTGATTGATCTTATCAGCCAAGTATGGGGAACCACCTTCATCGGGATGGGTAAGTATCATGATCTTCTTATGAGCATCCTTAATTCTATGTTGACTGGGCTGTTGACTCACACCAAGAATTAGGCCAGTTTCACTCCGTCAGATATTCTGTTCGTATCCCGCTCGATCGTACTTAGATCCGCCATCCATCATAATACCATA]

[-] EMBL BG931988             [GTTAATTTTTCTAGGATTATAGTATATCTTTGGCCTGATTGATCTTATCAGCCAAGTATGGGGAACCACCTTCATCGGGATGGGTAAGTATCATGATCTTCTTATGAGCATCCTTAATTCTATGTTGACTGGGCTGTTGACTCACACCAAGAATTAGGCCAGTTTCACTCCGTCAGATATTCTGTTCGTATCCCGCTCGATCGTACTTAGATCCGCCATCCATCATAATACCATA]




>consensus_9423#2
GTTAATTTTTCTAGGATTATAGTATATCTTTGGCCTGATTGATCTTATCAGCCAAGTATG
GGGAACCACCTTCATCGGGATGGGTAAGTATCATGATCTTCTTATGAGCATCCTTAATTC
TATGTTGACTGGGCTGTTGACTCACACCAAGAATTAGGCCAGTTTCACTCCGTCAGATAT
TCTGTTCGTATCCCGCTCGATCGTACTTAGATCCGCCATCCATCATAATACCATA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9423#0      NNNNNNNNNNNNNNNNNNNAATTGATAAAGAACGTTTATTCAAAAGTAAAGTATCTAACA 60
consensus_9423#1      ------------------------------------------------------------
consensus_9423#2      ------------------------------------------------------------
                                                                                  

consensus_9423#0      ATTTACATGTTTGTAACTATAAGTTTACAGTTCAAAAATTACAATGTAAACTGTATCTTA 120
consensus_9423#1      ------------------------------------------------------------
consensus_9423#2      ------------------------------------------------------------
                                                                                  

consensus_9423#0      CATTGTAAAATAATGAGCGATATATTACA-GCGGGGTCGTTAGTGGTGGTTAATTTTTGT 179
consensus_9423#1      --------------TGGTATTGTGATAGATGCGGGCTCGTTAGTGGTGGTTAATTTTTGT 46
consensus_9423#2      ------------------------------------------------GTTAATTTTTCT 12
                                                                      ********** *

consensus_9423#0      TGGATTCTAGTATATCTTTGGCCTGATTGATCTTAGCAGCCAAGTATGGGGAACCACCTT 239
consensus_9423#1      TGGATTCTAGTATATCTTTGGCCTGATTGATCTTAGCAGCCAAGTATGGGGAACCACCTT 106
consensus_9423#2      AGGATTATAGTATATCTTTGGCCTGATTGATCTTATCAGCCAAGTATGGGGAACCACCTT 72
                       ***** **************************** ************************

consensus_9423#0      TATCGGGATGGTTAAGAATCATGATCTTCTTATGAGCATCCCTAATTTTATTTTTACTTG 299
consensus_9423#1      TATCGGGATGGTTAAGAATCATGATCTTCTTATGAGCATCCCTAATTTTATTTTTACTTG 166
consensus_9423#2      CATCGGGATGGGTAAGTATCATGATCTTCTTATGAGCATCCTTAATTCTATGTTGACTGG 132
                       ********** **** ************************ ***** *** ** *** *

consensus_9423#0      ACTGTTGACTCACACCAAGAATTAGGGCAGCTTCACGCCGGGACATATTTTGTTCAAATC 359
consensus_9423#1      ACTGTTGACTCACACCAAGAATTAGGGCAGCTTCACGCCGGGACATATTTTGTTCAAATC 226
consensus_9423#2      GCTGTTGACTCACACCAAGAATTAGGCCAGTTTCACTCCGTCAGATATTCTGTTCGTATC 192
                       ************************* *** ***** ***  * ***** *****  ***

consensus_9423#0      CCCCACGATAATACTTAGAGCCACTCAGTCCAGATATACTGAAAATTNTTGCATACAACA 419
consensus_9423#1      CCTCACGATAATACTTAGAT---------------------------------------- 246
consensus_9423#2      CCGCTCGATCGTACTTAGATCCGCCATCCATCATAATACCATA----------------- 235
                      ** * ****  ********                                         

consensus_9423#0      AGCATTCATATTCCGTGTTATATAACGTCCAGCAACTCCTACGG 463
consensus_9423#1      --------------------------------------------
consensus_9423#2      --------------------------------------------